Contig 002374:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN009O11Sequence555002374 (5)ref|XP_004238327.1|126PREDICTED: uncharacterized protein LOC101254482 [Solanum lycopersicum]
JMFN036F23Sequence565002374 (5)ref|XP_004238327.1|127PREDICTED: uncharacterized protein LOC101254482 [Solanum lycopersicum]
JMFN046B10Sequence532002374 (5)ref|XP_004238327.1|130PREDICTED: uncharacterized protein LOC101254482 [Solanum lycopersicum]
JMSF038J18Sequence607002374 (5)ref|XP_004238327.1|127PREDICTED: uncharacterized protein LOC101254482 [Solanum lycopersicum]557002374 (5)ref|XP_004238327.1|127PREDICTED: uncharacterized protein LOC101254482 [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF038J18+                                                                TTTTTTT
                      ____________________________________________________________
consensus                                                                  TTTTTTT
 
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JMFN036F23+             TACAATACAACTCAAAATAAATATATGGATAATCATAACAATGAAAGATTACATTGAG
rJMSF038J18-                                                     TGAAAGATTACATTGAG
JMFN009O11+                         CAAAATAAATATATGGATAATCATAACAATGAAAGATTACATTGAG
JMFN046B10+             TACAATACAACTCAAAATAAATATATGGATAATCATAACAATGAAAGATTACATTGAG
JMSF038J18+           TTTACAATACAACTCAAAATAAATATATGGATAATCATAACAATGAAAGATTACATTGAG
                      ____________________________________________________________
consensus             TTTACAATACAACTCAAAATAAATATATGGATAATCATAACAATGAAAGATTACATTGAG
 
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JMFN036F23+           AATTACACAAAGGGGATGCTCAATAACCTGAGCAAATATCATCCAATCAATCTACGGTTG
rJMSF038J18-          AATTACACAAAGGGGATGCTCAATAACCTGAGCAAATATCATCCAATCAATCTACGGTTG
JMFN009O11+           AATTACACAAAGGGGATGCTCAATAACCTGAGCAAATATCATCCAATCAATCTACGGTTG
JMFN046B10+           AATTACACAAAGGGGATGCTCAATAACCTGAGCAAATATCATCCAATCAATCTACGGTTG
JMSF038J18+           AATTACACAAAGGGGATGCTCAATAACCTGAGCAAATATCATCCAATCAATCTACGGTNG
                      ____________________________________________________________
consensus             AATTACACAAAGGGGATGCTCAATAACCTGAGCAAATATCATCCAATCAATCTACGGTTG
 
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JMFN036F23+           GATGTGTTTCTTTAACCAGAAAAATTTTGGGGTGACATTGAGCATCTGATTCTGGGAATC
rJMSF038J18-          GATGTGTTTCTTTAACCAGAAAAATTTTGGGGTGACATTGAGCATCTGATTCTGGGAATC
JMFN009O11+           GATGTGTTTCTTTAACCAGAAAAATTTTGGGGTGACATTGAGCATCTGATTCTGGGAATC
JMFN046B10+           GATGTGTTTCTTTAACCAGAAAAATTTTGGGGTGACATTGAGCATCTGATTCTGGGAATC
JMSF038J18+           GATGTGTTTCTTTAACCAGAAAAATTTTGGGGTGACATTGAGCATCTGATTCTGGGAATC
                      ____________________________________________________________
consensus             GATGTGTTTCTTTAACCAGAAAAATTTTGGGGTGACATTGAGCATCTGATTCTGGGAATC
 
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JMFN036F23+           ATGCCTTCAAAAGGGAACTGATATTGCATAAAGGAATACAAAACCGCGGTGGCAGACACC
rJMSF038J18-          ATGCCTTCAAAAGGGAACTGATATTGCATAAAGGAATACAAAACCGCGGTGGCAGACACC
JMFN009O11+           ATGCCTTCAAAAGGGAACTGATATTGCATAAAGGAATACAAAACCGCGGTGGCAGACACC
JMFN046B10+           ATGCCTTCAAAAGGGAACTGATATTGCATAAAGGAATACAAAACCGCGGTGGCAGACACC
JMSF038J18+           ATGCCTTCAAAAGGGAACTGATATTGCATAAAGGAATACAAAACCGCGGTGGCAGACACC
                      ____________________________________________________________
consensus             ATGCCTTCAAAAGGGAACTGATATTGCATAAAGGAATACAAAACCGCGGTGGCAGACACC
 
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JMFN036F23+           TAGCTTGTATGTGTTTTGCTCTCTATGCTCGACTTGCTCATAACAAATACTCCAGCGACA
rJMSF038J18-          TAGCTTGTATGTGTTTTGCTCTCTATGCTCGACTTGCTCATAACAAATACTCCAGCGACA
JMFN009O11+           TAGCTTGTATGTGTTTTGCTCTCTATGCTCGACTTGCTCATAACAAATACTCCAGCGACA
JMFN046B10+           TAGCTTGTATGTGTTTTGCTCTCTATGCTCGACTTGCTCATAACAAATACTCCAGCGACA
JMSF038J18+           TAGCTTGTATGTGTTTTGCTCTCTATGCTCGACTTGCTCATAACAAATACTCCAGCGACA
                      ____________________________________________________________
consensus             TAGCTTGTATGTGTTTTGCTCTCTATGCTCGACTTGCTCATAACAAATACTCCAGCGACA
 
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JMFN036F23+           ATAAGTGCAGCACCGGCAAACCACTGTAGTGGTAAAGGTTCCTCGAAAAGCAAAAATCCA
rJMSF038J18-          ATAAGTGCAGCACCGGCAAACCACTGTAGTGGTAAAGGTTCCTCGAAAAGCAAAAATCCA
JMFN009O11+           ATAAGTGCAGCACCGGCAAACCACTGTAGTGGTAAAGGTTCCTCGAAAAGCAAAAATCCA
JMFN046B10+           ATAAGTGCAGCACCGGCAAACCACTGTAGTGGTAAAGGTTCCTCGAAAAGCAAAAATCCA
JMSF038J18+           ATAAGTGCAGCACCGGCAAACCACTGTAGTGGTAAAGGTTCCTCGAAAAGCAAAAATCCA
                      ____________________________________________________________
consensus             ATAAGTGCAGCACCGGCAAACCACTGTAGTGGTAAAGGTTCCTCGAAAAGCAAAAATCCA
 
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JMFN036F23+           GCCAAGCCGGAGGAAAGGAAATTGGTCGCAGAGTTCGTTACAGTAGCTTGTAGAGACGAG
rJMSF038J18-          GCCAAGCCGGAGGAAAGGAAATTGGTCGCAGAGTTCGTTACAGTAGCTTGTAGAGACGAG
JMFN009O11+           GCCAAGCCGGAGGAAAGGAAATTGGTCGCAGAGTTCGTTACAGTAGCTTGTAGAGACGAG
JMFN046B10+           GCCAAGCCGGAGGAAAGGAAATTGGTCGCAGAGTTCGTTACAGTAGCTTGTAGAGACGAG
JMSF038J18+           GCCAAGCCGGAGGAAAGGAAATTGGTCGCAGAGTTCGTTACAGTAGCTTGTAGAGACGAG
                      ____________________________________________________________
consensus             GCCAAGCCGGAGGAAAGGAAATTGGTCGCAGAGTTCGTTACAGTAGCTTGTAGAGACGAG
 
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JMFN036F23+           AGAGCTTTTAGGCTATTAACATAGCAACCCCACATTATCACGTTGCAAAGTACAACCATG
rJMSF038J18-          AGAGCTTTTAGGCTATTAACATAGCAACCCCACATTATCACGTTGCAAAGTACAACCATG
JMFN009O11+           AGAGCTTTTAGGCTATTAACATAGCAACCCCACATTATCACGTTGCAAAGTACAACCATG
JMFN046B10+           AGAGCTTTTAGGCTATTAACATAGCAACCCCACATTATCACGTTGCAAAGTACAACCATG
JMSF038J18+           AGAGCTTTTAGGCTATTAACATAGCAACCCCACATTATCACGTTGCAAAGTACAACCATG
                      ____________________________________________________________
consensus             AGAGCTTTTAGGCTATTAACATAGCAACCCCACATTATCACGTTGCAAAGTACAACCATG
 
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JMFN036F23+           CCATATTTAAGAACCTGGGAGGAGAAGAACTTGGCTGCAACGGCGGCAAGAGCTGCGCTG
rJMSF038J18-          CCATATTTAAGAACCTGGGAGGAGAAGAACTTGGCTGCAACGGCGGCAAGAGCTGCGCTG
JMFN009O11+           CCATATTTAAGAACCTGGGAGGAGAAGAACTTGGCTGCAACGGCGGCAAGAGCTGCGCTG
JMFN046B10+           CCATATTTAAGAACCTGGGAGGAGAAGAACTTGGCTGCAACGGCG               
JMSF038J18+           CCATATTTAAGAACCTGGGAGGAGAAGAACTTGGCTGCAACGGCGGCAAGAGCTGCGCTG
                      ____________________________________________________________
consensus             CCATATTTAAGAACCTGGGAGGAGAAGAACTTGGCTGCAACGGCGGCAAGAGCTGCGCTG
 
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JMFN036F23+           ATTCCGGCGCCGATCGCCGACGC                                     
rJMSF038J18-          ATTCCGGCGCCGATCGCCGACGCATAGCCTTTCTTACTGTCCATTGGACGACGAAGCCCA
JMFN009O11+           ATTCCGGCGCCGATCGCCGACGC                                     
JMSF038J18+           ATTCCGGCGCCGATCGCCGACGCATAGCCTTTCTTACTGTCCATTGGACGACGAAGCCCA
                      ____________________________________________________________
consensus             ATTCCGGCGCCGATCGCCGACGCATAGCCTTTCTTACTGTCCATTGGACGACGAAGCCCA