Contig 002366:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF037J22Sequence692002366 (2)ref|XP_010255617.1|359PREDICTED: uncharacterized protein LOC104596236 [Nelumbo nucifera] ref|XP_010255612010039 (2)ref|XP_002309914.2|8e-55SWIM zinc finger family protein [Populus trichocarpa] gb|EEE90364.2| SWIM zinc f
JMSF043C15Sequence761002366 (2)ref|XP_010255617.1|405PREDICTED: uncharacterized protein LOC104596236 [Nelumbo nucifera] ref|XP_010255783010039 (2)ref|XP_009613006.1|283PREDICTED: uncharacterized protein LOC104106214 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF043C15+                            TCAATGTGCTTCTCTAAAACATTTTCCTCAGGAATGCCAAGAT
                      ____________________________________________________________
consensus                              TCAATGTGCTTCTCTAAAACATTTTCCTCAGGAATGCCAAGAT
 
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JMSF043C15+           AGATCATAGACATAGTTTGCTGTTGAATCTCATTGCAAATATATGGGATCTTTTTAGCAC
JMSF037J22+                                       CTCATTGCAAATATATGGGATCTTTTTAGCAC
                      ____________________________________________________________
consensus             AGATCATAGACATAGTTTGCTGTTGAATCTCATTGCAAATATATGGGATCTTTTTAGCAC
 
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JMSF043C15+           CAGGTCCAATAGCATCTCTATCAAGTGGTCCATGGCACACAAAGCCAGACTTGTTGACAT
JMSF037J22+           CAGGTCCAATAGCATCTCTATCAAGTGGTCCATGGCACACAAAGCCAGACTTGTTGACAT
                      ____________________________________________________________
consensus             CAGGTCCAATAGCATCTCTATCAAGTGGTCCATGGCACACAAAGCCAGACTTGTTGACAT
 
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JMSF043C15+           GACGCCTATTGTTAAATATTAGGAGTGCAAGGGACGGGCAGGCATACAAACGCTTCACCA
JMSF037J22+           GACGCCTATTGTTAAATATTAGGAGTGCAAGGGACGGGCAGGCATACAAACGCTTCACCA
                      ____________________________________________________________
consensus             GACGCCTATTGTTAAATATTAGGAGTGCAAGGGACGGGCAGGCATACAAACGCTTCACCA
 
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JMSF043C15+           CGAAATGGCATGTACATCCCCTCATAGATTGGGGTCGAGCAGCGCGGTTTCGAGTGTTGA
JMSF037J22+           CGAAATGGCATGTACATCCCCTCATAGATTGGGGTCGAGCAGCGCGGTTTCGAGTGTTGA
                      ____________________________________________________________
consensus             CGAAATGGCATGTACATCCCCTCATAGATTGGGGTCGAGCAGCGCGGTTTCGAGTGTTGA
 
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JMSF043C15+           GTCGATACCTTCGGCTTGGTAATATACCTCCTCCTTCTCCATAGTTTTCAGGGCCAAATG
JMSF037J22+           GTCGATACCTTCGGCTTGGTAATATACCTCCTCCTTCTCCATAGTTTTCAGGGCCAAATG
                      ____________________________________________________________
consensus             GTCGATACCTTCGGCTTGGTAATATACCTCCTCCTTCTCCATAGTTTTCAGGGCCAAATG
 
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JMSF043C15+           AACACCAATACATCCTGTACTCCAAGTATTCATCAGGCCTATATTCTTTTAAACTCCCTT
JMSF037J22+           AACACCAATACATCCTGTACTCCAAGTATTCATCAGGCCTATATTCTTTTAAACTCCCTT
                      ____________________________________________________________
consensus             AACACCAATACATCCTGTACTCCAAGTATTCATCAGGCCTATATTCTTTTAAACTCCCTT
 
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JMSF043C15+           CAACTCGTTTCCTCCCCCTCTCAATGTGGAATCTTGTTGGGCATTCCACATTCGAACATT
JMSF037J22+           CAACTCGTTTCCTCCCCCTCTCAATGTGGAATCTTGTTGGGCATTCCACATTCGAACATT
                      ____________________________________________________________
consensus             CAACTCGTTTCCTCCCCCTCTCAATGTGGAATCTTGTTGGGCATTCCACATTCGAACATT
 
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JMSF043C15+           CTCCGATAATGAAAGCATCAACACGGTCATAAGGAATAAGGGCAACCTCATCTTGGTGCT
JMSF037J22+           CTCCGATAATGAAAGCATCAACACGGTCATAAGGAATAAGGGCAACCTCATCTTGGTGCT
                      ____________________________________________________________
consensus             CTCCGATAATGAAAGCATCAACACGGTCATAAGGAATAAGGGCAACCTCATCTTGGTGCT
 
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JMSF043C15+           CTGCACTCCCAAACTTGGTCCAATTCAAATCAGCAGATGAGAAGTCTTCCCCTGGCGGGT
JMSF037J22+           CTGCACTCCCAAACTTGGTCCAATTCAAATCAGCAGATGAGAAGTCTTCCCCTGGCGGGT
                      ____________________________________________________________
consensus             CTGCACTCCCAAACTTGGTCCAATTCAAATCAGCAGATGAGAAGTCTTCCCCTGGCGGGT
 
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JMSF043C15+           TTTGCACAACAAGACTTTGAATGGACTCAACTATATCCATCCCTGAAAAGCTTCGGCCGG
JMSF037J22+           TTTGCACAACAAGACTTTGAATGGACTCAACTATATCCATCCCTGAAAAGCTTCGGCCGG
                      ____________________________________________________________
consensus             TTTGCACAACAAGACTTTGAATGGACTCAACTATATCCATCCCTGAAAAGCTTCGGCCGG
 
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JMSF043C15+           ATAAGAGAGAAGCCGAGACACGCCGGAAGTGGCAACGGAGATGAGTGGAGTGTATTTCTT
JMSF037J22+           ATAAGAGAGAAGCCGAGACACGCCGGAAGTGGCAACGGAGATGAGTGGAGTGTATTTCTT
                      ____________________________________________________________
consensus             ATAAGAGAGAAGCCGAGACACGCCGGAAGTGGCAACGGAGATGAGTGGAGTGTATTTCTT
 
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JMSF043C15+           TCTTTTCGACGGCGGGGAATTTACAGGGCCGACTTTTCAAGGTATGCTTCAATCACC   
JMSF037J22+           TCTTTTCGACGGCGGGGAATTTACAGGGCCGACTTTTCAAGGTATGCTTCAATCACCGGC
                      ____________________________________________________________
consensus             TCTTTTCGACGGCGGGGAATTTACAGGGCCGACTTTTCAAGGTATGCTTCAATCACCGGC