Contig 002357:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021M05Sequence610002357 (2)ref|XP_002318354.1|3e-48hypothetical protein POPTR_0012s01020g [Populus trichocarpa] gb|EEE96574.1| hypo342002720 (4)ref|XP_011087814.1|5e-10PREDICTED: G-box-binding factor 4-like [Sesamum indicum]
JMSF036H08Sequence616002357 (2)ref|XP_002318354.1|3e-47hypothetical protein POPTR_0012s01020g [Populus trichocarpa] gb|EEE96574.1| hypo629011374 (22)ref|XP_008644390.1|3e-97PREDICTED: 40S ribosomal protein S23-like [Zea mays]

Alignment

This contig is upended


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JMSF021M05+                                                          CTGCATTCTTGAA
JMSF036H08+                                                       TTCCTGCATTCTTGAA
                      ____________________________________________________________
consensus                                                         TTCCTGCATTCTTGAA
 
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JMSF021M05+           TTCGCGGTTCTGTGTCTAGGCCGGAACCTGCACCTCTGTAGTTTCTGGCATATGGGGCGA
JMSF036H08+           TTCGCGGTTCTGTGTCTAGGCCGGAACCTGCACCTCTGTAGTTTCTGGCATATGGGGCGA
                      ____________________________________________________________
consensus             TTCGCGGTTCTGTGTCTAGGCCGGAACCTGCACCTCTGTAGTTTCTGGCATATGGGGCGA
 
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JMSF021M05+           AGAAAGTCCAAGTATTTCTGGAAAAACTGCCTGGATAATCGTCGACAGCTTCTCAAGGAC
JMSF036H08+           AGAAAGTCCAAGTATTTCTGGAAAAACTGCCTGGATAATCGTCGACAGCTTCTCAAGGAC
                      ____________________________________________________________
consensus             AGAAAGTCCAAGTATTTCTGGAAAAACTGCCTGGATAATCGTCGACAGCTTCTCAAGGAC
 
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JMSF021M05+           GGGCAGGGGATCCTCCCGGATGACTGCAGCATCTCGTTCTGGGCAACTGAAGTGGAAGGA
JMSF036H08+           GGGCAGGGGATCCTCCCGGATGACTGCAGCATCTCGTTCTGGGCAACTGAAGTGGAAGGA
                      ____________________________________________________________
consensus             GGGCAGGGGATCCTCCCGGATGACTGCAGCATCTCGTTCTGGGCAACTGAAGTGGAAGGA
 
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JMSF021M05+           GTCGTTGGCATGGAGTCAGAAGCATCATACGCCTCCATGCTCATCGGCTTGAAGAAGAGA
JMSF036H08+           GTCGTTGGCATGGAGTCAGAAGCATCATACGCCTCCATGCTCATCGGCTTGAAGAAGAGA
                      ____________________________________________________________
consensus             GTCGTTGGCATGGAGTCAGAAGCATCATACGCCTCCATGCTCATCGGCTTGAAGAAGAGA
 
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JMSF021M05+           GGCACGAGGAAGCCATTGGAAATGAGCTCGTCTGCATGCACAATCGCAAATGGAGAATCC
JMSF036H08+           GGCACGAGGAAGCCATTGGAAATGAGCTCGTCTGCATGCACAATCGCAAATGGAGAATCC
                      ____________________________________________________________
consensus             GGCACGAGGAAGCCATTGGAAATGAGCTCGTCTGCATGCACAATCGCAAATGGAGAATCC
 
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JMSF021M05+           GAAATAGGGAGATCAAAGTTAAAATCCTGGGGAACGCTGAAGAATCTCTTCGAAGGGGAG
JMSF036H08+           GAAATAGGGAGATCAAAGTTAAAATCCTGGGGAACGCTGAAGAATCTCTTCGAAGGGGAG
                      ____________________________________________________________
consensus             GAAATAGGGAGATCAAAGTTAAAATCCTGGGGAACGCTGAAGAATCTCTTCGAAGGGGAG
 
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JMSF021M05+           AGCTTCGGATCCATCTCGATGAAAGAAGAAGCCTCCTCATCAGAAAGAGAGGCCCTGAAG
JMSF036H08+           AGCTTCGGATCCATCTCGATGAAAGAAGAAGCCTCCTCATCAGAAAGAGAGGCCCTGAAG
                      ____________________________________________________________
consensus             AGCTTCGGATCCATCTCGATGAAAGAAGAAGCCTCCTCATCAGAAAGAGAGGCCCTGAAG
 
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JMSF021M05+           GAGCTCTCCAGGCTCTCAAAAGATGGCTTCAGGTTCACCAGCCAACTGTAGGAAAAGCTA
JMSF036H08+           GAGCTCTCCAGGCTCTCAAAAGATGGCTTCAGGCTCACCAGCCAACTGTAGGAAAAGCTA
                      ____________________________________________________________
consensus             GAGCTCTCCAGGCTCTCAAAAGATGGCTTCAGGTTCACCAGCCAACTGTAGGAAAAGCTA
 
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JMSF021M05+           TCAATGGAGAGAGACTGAGAGGTCTCCATAGGAGGGAGAAGGCTACAAAAAGTGGGAAGG
JMSF036H08+           TCAATGGAGAGAGACTGAGAGGTCTCCATAGGAGGGAGAAGGCTACAAAAAGTGGGAAGG
                      ____________________________________________________________
consensus             TCAATGGAGAGAGACTGAGAGGTCTCCATAGGAGGGAGAAGGCTACAAAAAGTGGGAAGG
 
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JMSF021M05+           TTTACGCTACACACAGCATCAAAGCGCGGGGGTTCCTAAAGTAGTGAAATGGCCCTC   
JMSF036H08+           TTTACGCTACACACAGCATCAAAGCGCGGGGGTTCCTAAAGTAGTGAAATGGCCCTCCCC
                      ____________________________________________________________
consensus             TTTACGCTACACACAGCATCAAAGCGCGGGGGTTCCTAAAGTAGTGAAATGGCCCTCCCC