Contig 002353:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS022A03Sequence595002353 (3)ref|XP_006367706.1|3e-50PREDICTED: pentatricopeptide repeat-containing protein At1g74750-like [Solanum
JMFS150G06Sequence539002353 (3)ref|XP_006367706.1|3e-18PREDICTED: pentatricopeptide repeat-containing protein At1g74750-like [Solanum
JMSF035M10Sequence657002353 (3)ref|XP_006367706.1|4e-39PREDICTED: pentatricopeptide repeat-containing protein At1g74750-like [Solanum 692019377gb|KJB39874.1|5e-106hypothetical protein B456_007G035000 [Gossypium raimondii]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS022A03+ ACG
                      ____________________________________________________________
consensus ACG
 
. : . : . : . : . : . :
JMFS022A03+ GTTGAGGGTTTCACAGTAGAAATTGGCTTTGTGCGCTCAACCACACAATTTGGTGATGAT
                      ____________________________________________________________
consensus GTTGAGGGTTTCACAGTAGAAATTGGCTTTGTGCGCTCAACCACACAATTTGGTGATGAT
 
. : . : . : . : . : . :
JMFS022A03+ TTAAGTACTTCATTGCCATCCGACATTGGGATTTTATAATGTACCAAATCTGATAAAAAA
JMSF035M10+ AGTACTTCATTGCCATCCGACATTGGGATTTTATAATGTACCAAATCTGATAAAAAA
                      ____________________________________________________________
consensus TTAAGTACTTCATTGCCATCCGACATTGGGATTTTATAATGTACCAAATCTGATAAAAAA
 
. : . : . : . : . : . :
JMFS022A03+ TTGACTGCTGCAATACCTGCCCTAACAAACTGGTCCGAAATGGGAGGTGACGAATGCATA
JMFS150G06+ CGAATGCATA
JMSF035M10+ TTGACTGCTGCAATACCTGCCCTAACAAACTGGTCCGAAATGGGAGGTGACGAATGCATA
                      ____________________________________________________________
consensus TTGACTGCTGCAATACCTGCCCTAACAAACTGGTCCGAAATGGGAGGTGACGAATGCATA
 
. : . : . : . : . : . :
JMFS022A03+ ATCTCCGAAGCTTCCAAGCTGCCATAACTAACACAATCTGCTCTCTTTGATGAATTAGTG
JMFS150G06+ ATCTCCGAAGCTTCCAAGCTGCCATAACTAACACAATCTGCTCTCTTTGATGAATTAGTG
JMSF035M10+ ATCTCCGAAGCTTCCAAGCTGCCATAACTAACACAATCTGCTCTCTTTGATGAATTAGTG
                      ____________________________________________________________
consensus ATCTCCGAAGCTTCCAAGCTGCCATAACTAACACAATCTGCTCTCTTTGATGAATTAGTG
 
. : . : . : . : . : . :
JMFS022A03+ TAAGGTATAATTTGTGGGTCAGAAACTGAGTAGTTAGGCTTCTCGTTTTTCTGAAAGTTC
JMFS150G06+ TAAGGTATAATTTGTGGGTCAGAAACTGAGTAGTTAGGCTTCTCGTTTTTCTGAAAGTTC
JMSF035M10+ TAAGGTATAATTTGTGGGTCAGAAACTGAGTAGTTAGGCTTCTCGTTTTTCTGAAAGTTC
                      ____________________________________________________________
consensus TAAGGTATAATTTGTGGGTCAGAAACTGAGTAGTTAGGCTTCTCGTTTTTCTGAAAGTTC
 
. : . : . : . : . : . :
JMFS022A03+ ACACCTTTTACACCATCTCTTGAAATCAAGGAGCCTACTCCTCCAGATGATTTCGAAACT
JMFS150G06+ ACACCTTTTACACCATCTCTTGAAATCAAGGAGCCTACTCCTCCAGATGATTTCGAAACT
JMSF035M10+ ACACCTTTTACACCATCTCTTGAAATCAAGGAGCCTACTCCTCCAGATGATTTCGAAACT
                      ____________________________________________________________
consensus ACACCTTTTACACCATCTCTTGAAATCAAGGAGCCTACTCCTCCAGATGATTTCGAAACT
 
. : . : . : . : . : . :
JMFS022A03+ GAGGTGGATGAGATTTCCAGATGTCGAACATTGTTCTTTGTCTGAGGCCTTCTAGAAATA
JMFS150G06+ GAGGTGGATGAGATTTCCAGATGTCGAACATTGTTCTTTGTCTGAGGCCTTCTAGAAATA
JMSF035M10+ GAGGTGGATGAGATTTCCAGATGTCGAACATTGTTCTTTGTCTGAGGCCTTCTAGAAATA
                      ____________________________________________________________
consensus GAGGTGGATGAGATTTCCAGATGTCGAACATTGTTCTTTGTCTGAGGCCTTCTAGAAATA
 
. : . : . : . : . : . :
JMFS022A03+ GAGCTCTCATCCTCAGAACAAGAACATGAACCATCTGCTACACTGGATTTTGAACCACTT
JMFS150G06+ GAGCTCTCATCCTCAGAACAAGAACATGAACCATCTGCTACACTGGATTTTGAACCACTT
JMSF035M10+ GAGCTCTCATCCTCAGAACAAGAACATGAACCATCTGCTACACTGGATTTTGAACCACTT
                      ____________________________________________________________
consensus GAGCTCTCATCCTCAGAACAAGAACATGAACCATCTGCTACACTGGATTTTGAACCACTT
 
. : . : . : . : . : . :
JMFS022A03+ AAGATGAAGGACCTAGCAGATTGGGATAAGGTGCCGAGCTGCTTTGCACGTATCATACTC
JMFS150G06+ AAGATGAAGGACCTAGCAGATTGGGATAAGGTGCCGAGCTGCTTTGCACGTATCATACTC
JMSF035M10+ AAGATGAAGGACCTAGCAGATTGGGATAAGGTGCCGAGCTGCTTTGCACGTATCATACTC
                      ____________________________________________________________
consensus AAGATGAAGGACCTAGCAGATTGGGATAAGGTGCCGAGCTGCTTTGCACGTATCATACTC
 
. : . : . : . : . : . :
JMFS022A03+ TGAGATGGTGTATATATGAGCCACCGGAAACGAAGATTGGT
JMFS150G06+ TGAGATGGTGTATATATGAGCCACCGGAAACGAAGATTGGTGAAGAGAAGAAATTAAAAC
JMSF035M10+ TGAGATGGTGTATATATGAGCCACCGGAAACGAAGATTGGTGAAGAGAAGAAATTAAAAC
                      ____________________________________________________________
consensus TGAGATGGTGTATATATGAGCCACCGGAAACGAAGATTGGTGAAGAGAAGAAATTAAAAC
 
. : . : . : . : . : . :
JMFS150G06+ TAATTTGGATTCGAGAGAGAAGGTTAGAGAGGGCGGCTGTTCTCTGACTCCCTCCCGATG
JMSF035M10+ TAATTTGGATTCGAGAGAGAAGGTTAGAGAGGGCGGCTGTTCTCTGACTCCCTCCCGATG
                      ____________________________________________________________
consensus TAATTTGGATTCGAGAGAGAAGGTTAGAGAGGGCGGCTGTTCTCTGACTCCCTCCCGATG
 
. : . : . : . : . : . :
JMFS150G06+ CCGTCGCCCCTTTTGAGTTTCCAACTAATTTGGGTGCAGGCAGCCCCGT
JMSF035M10+ CCGTCGCCCCTTTTGAGTTTCCAACTAATTTGGGTGCAGGCAGCCCCGTGTGGTGACTAC
                      ____________________________________________________________
consensus CCGTCGCCCCTTTTGAGTTTCCAACTAATTTGGGTGCAGGCAGCCCCGTGTGGTGACTAC