| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN009J02 | Sequence | 459 | 002351 (8) | emb|CDO98878.1| | 2e-48 | unnamed protein product [Coffea canephora] | |||||
| JMSF011J04 | Sequence | 278 | 002351 (8) | gb|AEC10964.1| | 5e-37 | 40S ribosomal protein s21e [Camellia sinensis] | 456 | 002351 (8) | emb|CDO98878.1| | 2e-48 | unnamed protein product [Coffea canephora] |
| JMSF012J04 | Sequence | 459 | 002351 (8) | emb|CDO98878.1| | 2e-48 | unnamed protein product [Coffea canephora] | |||||
| JMSF035E08 | Sequence | 589 | 002351 (8) | emb|CDO98878.1| | 1e-47 | unnamed protein product [Coffea canephora] | 528 | 002351 (8) | emb|CDO98878.1| | 6e-48 | unnamed protein product [Coffea canephora] |
| JMSF035K18 | Sequence | 589 | 002351 (8) | emb|CDO98878.1| | 1e-47 | unnamed protein product [Coffea canephora] | 528 | 002351 (8) | emb|CDO98878.1| | 6e-48 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF035E08- GAGCTCTCCATCTGCCCTGCAACTTTTTCCGGCGACATATCAATACTCG
rJMSF035E08+ GAGCTCTCCATCTGCCCTGCAACTTTTTCCGGCGACATATCAATACTCG
rJMSF035K18+ GAGCTCTCCATCTGCCCTGCAACTTTTTCCGGCGACATATCAATACTCG
JMFN009J02- CCGGCGACATATCAATACTCG
rJMSF011J04+ GAGCTCTCCATCTGCCCTGCAACTTTTTCCGGCGACATATCAATACTCG
rJMSF012J04+ GAGCTCTCCATCTGCCCTGCAACTTTTTCCGGCGACATATCAATACTCG
JMSF011J04- GAGCTCTCCATCTGCCCTGCAACTTTTTCCGGCGACATATCAATACTCG
JMSF035K18- GAGCTCTCCATCTGCCCTGCAACTTTTTCCGGCGACATATCAATACTCG
____________________________________________________________
consensus GAGCTCTCCATCTGCCCTGCAACTTTTTCCGGCGACATATCAATACTCG
. : . : . : . : . : . :
JMSF035E08- TTGTTTGTTGAGGCTTAAGAAAGCTTATCAAGATGCAGAATGACGAGGGACAAAACATGG
rJMSF035E08+ TTGTTTGTTGAGGCTTAAGAAAGCTTATCAAGATGCAGAATGACGAGGGACAAAACATGG
rJMSF035K18+ TTGTTTGTTGAGGCTTAAGAAAGCTTATCAAGATGCAGAATGACGAGGGACAAAACATGG
JMFN009J02- TTGTTTGTTGAGGCTTAAGAAAGCTTATCAAGATGCAGAATGACGAGGGACAAAACATGG
rJMSF011J04+ TTGTTTGTTGAGGCTTAAGAAAGCTTATCAAGATGCAGAATGACGAGGGACAAAACATGG
rJMSF012J04+ TTGTTTGTTGAGGCTTAAGAAAGCTTATCAAGATGCAGAATGACGAGGGACAAAACATGG
JMSF011J04- TTGTTTGTTGAGGCTTAAGAAAGCTTATCAAGATGCAGAATGACGAGGGACAAAACATGG
JMSF035K18- TTGTTTGTTGAGGCTTAAGAAAGCTTATCAAGATGCAGAATGACGAGGGACAAAACATGG
____________________________________________________________
consensus TTGTTTGTTGAGGCTTAAGAAAGCTTATCAAGATGCAGAATGACGAGGGACAAAACATGG
. : . : . : . : . : . :
JMSF035E08- ATCTTTACATTCCCAGGAAATGTTCTGCAACTAATAGGCTGATTACCTCAAAGGATCATG
rJMSF035E08+ ATCTTTACATTCCCAGGAAATGTTCTGCAACTAATAGGCTGATTACCTCAAAGGATCATG
rJMSF035K18+ ATCTTTACATTCCCAGGAAATGTTCTGCAACTAATAGGCTGATTACCTCAAAGGATCATG
JMFN009J02- ATCTTTACATTCCCAGGAAATGTTCTGCAACTAATAGGCTGATTACCTCAAAGGATCATG
rJMSF011J04+ ATCTTTACATTCCCAGGAAATGTTCTGCAACTAATAGGCTGATTACCTCAAAGGATCATG
rJMSF012J04+ ATCTTTACATTCCCAGGAAATGTTCTGCAACTAATAGGCTGATTACCTCAAAGGATCATG
JMSF011J04- ATCTTTACATTCCCAGGAAATGTTCTGCAACTAATAGGCTGATTACCTCAAAGGATCATG
JMSF035K18- ATCTTTACATTCCCAGGAAATGTTCTGCAACTAATAGGCTGATTACCTCAAAGGATCATG
____________________________________________________________
consensus ATCTTTACATTCCCAGGAAATGTTCTGCAACTAATAGGCTGATTACCTCAAAGGATCATG
. : . : . : . : . : . :
JMSF035E08- CCTCTGTTCAGATTAACGTTGGGCATTTGAATGAGAATGGTGTGTATGTGGGAAATTACA
rJMSF035E08+ CCTCTGTTCAGATTAACGTTGGGCATTTGAATGAGAATGGTGTGTATGTGGGAAATTACA
rJMSF035K18+ CCTCTGTTCAGATTAACGTTGGGCATTTGAATGAGAATGGTGTGTATGTGGGAAATTACA
JMFN009J02- CCTCTGTTCAGATTAACGTTGGGCATTTGAATGAGAATGGTGTGTATGTGGGAAATTACA
rJMSF011J04+ CCTCTGTTCAGATTAACGTTGGGCATTTGAATGAGAATGGTGTGTATGTGGGAAATTACA
rJMSF012J04+ CCTCTGTTCAGATTAACGTTGGGCATTTGAATGAGAATGGTGTGTATGTGGGAAATTACA
JMSF011J04- CCTCTGTTCAGATTAACGTTGGGCATTTGAATGAGAATGGTGTGTATGTGGGAAATTACA
JMSF035K18- CCTCTGTTCAGATTAACGTTGGGCATTTGAATGAGAATGGTGTGTATGTGGGAAATTACA
____________________________________________________________
consensus CCTCTGTTCAGATTAACGTTGGGCATTTGAATGAGAATGGTGTGTATGTGGGAAATTACA
. : . : . : . : . : . :
JMSF035E08- CCACTTTTGCTCTTTGCGGCTTTGTTCGTGCTCAGGGGGATGCTGACAGTGCTTTGGACC
rJMSF035E08+ CCACTTTTGCTCTTTGCGGCTTTGTTCGTGCTCAGGGGGATGCTGACAGTGCTTTGGACC
rJMSF035K18+ CCACTTTTGCTCTTTGCGGCTTTGTTCGTGCTCAGGGGGATGCTGACAGTGCTTTGGACC
JMFN009J02- CCACTTTTGCTCTTTGCGGCTTTGTTCGTGCTCAGGGGGATGCTGACAGTGCTTTGGACC
rJMSF011J04+ CCACTTTTGCTCTTTGCGGCTTTGTTCGTGCTCAGGGGGATGCTGACAGTGCTTTGGACC
rJMSF012J04+ CCACTTTTGCTCTTTGCGGCTTTGTTCGTGCTCAGGGGGATGCTGACAGTGCTTTGGACC
JMSF011J04- CCACTTTTGCTCTTTGCGGCTTTGTTCGTGCTCAGGGGGATGCTGACAG
JMSF035K18- CCACTTTTGCTCTTTGCGGCTTTGTTCGTGCTCAGGGGGATGCTGACAGTGCTTTGGACC
____________________________________________________________
consensus CCACTTTTGCTCTTTGCGGCTTTGTTCGTGCTCAGGGGGATGCTGACAGTGCTTTGGACC
. : . : . : . : . : . :
JMSF035E08- GCTTGTGGCAGAAAAAGAAAGTTGAAACAAGACAGCAGTAGAATGATAATTTTTAGTCAG
rJMSF035E08+ GCTTGTGGCAGAAAAAGAAAGTTGAAACAAGACAGCAGTAGAATGATAATTTTTAGTCAG
rJMSF035K18+ GCTTGTGGCAGAAAAAGAAAGTTGAAACAAGACAGCAGTAGAATGATAATTTTTAGTCAG
JMFN009J02- GCTTGTGGCAGAAAAAGAAAGTTGAAACAAGACAGCAGTAGAATGATAATTTTTAGTCAG
rJMSF011J04+ GCTTGTGGCAGAAAAAGAAAGTTGAAACAAGACAGCAGTAGAATGATAATTTTTAGTCAG
rJMSF012J04+ GCTTGTGGCAGAAAAAGAAAGTTGAAACAAGACAGCAGTAGAATGATAATTTTTAGTCAG
JMSF035K18- GCTTGTGGCAGAAAAAGAAAGTTGAAACAAGACAGCAGTAGAATGATAATTTTTAGTCAG
____________________________________________________________
consensus GCTTGTGGCAGAAAAAGAAAGTTGAAACAAGACAGCAGTAGAATGATAATTTTTAGTCAG
. : . : . : . : . : . :
JMSF035E08- TTTTGGCTATATTTAAACTGTTGAGGGATATGCCCATTTTTCAGTCTTGAAAAACTAATT
rJMSF035E08+ TTTTGGCTATATTTAAACTGTTGAGGGATATGCCCATTTTTCAGTCTTGAAAAACTAATT
rJMSF035K18+ TTTTGGCTATATTTAAACTGTTGAGGGATATGCCCATTTTTCAGTCTTGAAAAACTAATT
JMFN009J02- TTTTGGCTATATTTAAACTGTTGAGGGATATGCCCATTTTTCAGTCTTGAAAAACTAATT
rJMSF011J04+ TTTTGGCTATATTTAAACTGTTGAGGGATATGCCCATTTTTCAGTCTTGAAAAACTAATT
rJMSF012J04+ TTTNGGCTATATTTAANCTGTTGAGGGATATGCCCATTTTTCAGTCTTGAAAAACTNATT
JMSF035K18- TTTTGGCTATATTTAAACTGTTGAGGGATATGCCCATTTTTCAGTCTTGAAAAACTAATT
____________________________________________________________
consensus TTTTGGCTATATTTAAACTGTTGAGGGATATGCCCATTTTTCAGTCTTGAAAAACTAATT
. : . : . : . : . : . :
JMSF035E08- AGGTTAAATCCATCCTTGAAGAACATATGCTGAGATGACAATTTTTGTTTTCAACTTTTG
rJMSF035E08+ AGGTTAAATCCATCCTTGAAGAACATATGCTGAGATGACAATTTTTGTTTTCAACTTTTG
rJMSF035K18+ AGGTTAAATCCATCCTTGAAGAACATATGCTGAGATGACAATTTTTGTTTTCAACTTTTG
JMFN009J02- AGGTTAAATCCATCCTTGAAGAACATATGCTGAGATAACAATTTTTGTTTTCAACTTTTG
rJMSF011J04+ AGGTTAAATCCATCCTTGAAGAACATATGCTGAGATGACAATTTT
rJMSF012J04+ AGGNTAAATCCATCCTTGAAGAACATATGCTGAGACGACAATT
JMSF035K18- AGGTTAAATCCATCCTTGAAGAACATATGCTGAGATGACAATTTTTGTTTTCAACTTTTG
____________________________________________________________
consensus AGGTTAAATCCATCCTTGAAGAACATATGCTGAGATGACAATTTTTGTTTTCAACTTTTG
. : . : . : . : . : . :
JMSF035E08- CATTTGGTAATTTGGATCATTCTTCTTTGCAGAGAATTTCTACTATTTGATTATTAGATT
rJMSF035E08+ CATTTGGTAATTTGGATCATTCTTCTTTGCAGAGAATTTCTACTATTTGATTATTAGAT
rJMSF035K18+ CATTTGGTAATTTGGATCATTCTTCTTTGCAGAGAATTTCTACTATTTGATTATTAGAT
JMFN009J02- CATTTGGTAATTTGGATC
JMSF035K18- CATTTGGTAATTTGGATCATTCTTCTTTGCAGAGAATTTCTACTATTTGATTATTAGATT
____________________________________________________________
consensus CATTTGGTAATTTGGATCATTCTTCTTTGCAGAGAATTTCTACTATTTGATTATTAGATT
. : . : . : . : . : . :
JMSF035E08- AACTCTGCACCCTGAATACTTGTGTATATGTATGTACGGTTTAATAGTGCAAAAAAAAAA
JMSF035K18- AACTCTGCACCCTGAATACTTGTGTATATGTATGTACGGTTTAATAGTGCAAAAAAAAAA
____________________________________________________________
consensus AACTCTGCACCCTGAATACTTGTGTATATGTATGTACGGTTTAATAGTGCAAAAAAAAAA