Contig 002350:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS053E04Sequence610002350 (3)ref|XP_004244283.2|7e-80PREDICTED: tubby-like F-box protein 7 [Solanum lycopersicum]
JMSF018C05Sequence412002350 (3)ref|XP_004244283.2|6e-30PREDICTED: tubby-like F-box protein 7 [Solanum lycopersicum]710007085 (2)ref|XP_009631710.1|3e-111PREDICTED: tubby-like F-box protein 7 [Nicotiana tomentosiformis]
JMSF035I06Sequence671002350 (3)ref|XP_004244283.2|9e-89PREDICTED: tubby-like F-box protein 7 [Solanum lycopersicum]719007085 (2)ref|XP_009631710.1|8e-112PREDICTED: tubby-like F-box protein 7 [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035I06+                                                            CACCTCAATTT
                      ____________________________________________________________
consensus                                                              CACCTCAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS053E04+                                  GAGATAGATCGTCAGCATCGAGAGAAATTACGTATTC
JMSF035I06+           CCCGACATAGGCTTTACTTCTTTGAGATAGATCGTCAGCATCGAGAGAAATTACGTATTC
                      ____________________________________________________________
consensus             CCCGACATAGGCTTTACTTCTTTGAGATAGATCGTCAGCATCGAGAGAAATTACGTATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS053E04+           AGTATGAGCACCAGTCNTACATCTTCGTGCAGCTAGGAGAAATTTTCCCTTATCCACAAG
JMSF035I06+           AGTATGAGCACCAGTCCTACATCTTCGTGCAGCTAGGAGAAATTTTCCCTTATCCACAAG
                      ____________________________________________________________
consensus             AGTATGAGCACCAGTCCTACATCTTCGTGCAGCTAGGAGAAATTTTCCCTTATCCACAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS053E04+           TAATGGTGAAAGACCAAGATAAAGATAAAATGTGGAATTCTTCTTGTCACGTTTGATAAA
JMSF035I06+           TAATGGTGAAAGACCAAGATAAAGATAAAATGTGGAATTCTTCTTGTCACGTTTGATAAA
                      ____________________________________________________________
consensus             TAATGGTGAAAGACCAAGATAAAGATAAAATGTGGAATTCTTCTTGTCACGTTTGATAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS053E04+           ACATTGAAGTGGAGCATCACGGGGCCCTGGCTGTTTAAGGCAAGAAGGGAAGGTGATTTT
JMSF035I06+           ACATTGAAGTGGAGCATCACGGGGCCCTGGCTGTTTAAGGCAAGAAGGGAAGGTGATTTT
                      ____________________________________________________________
consensus             ACATTGAAGTGGAGCATCACGGGGCCCTGGCTGTTTAAGGCAAGAAGGGAAGGTGATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS053E04+           TCCAGCGTGAAGGGATGACTTAACAGTTTCTAGAGTGACCTCTCTCCACCGCTTGCACAC
JMSF018C05+                   GAAGGGATGACTTAACAGTTTCTAGAGTGACCTCTCTCCACCGCTTGCACAC
JMSF035I06+           TCCAGCGTGAAGGGATGACTTAACAGTTTCTAGAGTGACCTCTCTCCACCGCTTGCACAC
                      ____________________________________________________________
consensus             TCCAGCGTGAAGGGATGACTTAACAGTTTCTAGAGTGACCTCTCTCCACCGCTTGCACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS053E04+           GCATCCACACGCAACGACGTTTTGGCGGCTCGGCCAACGCTCCTCGGTGGCCTCGACTCG
JMSF018C05+           GCATCCACACGCAACGACGTTTTGGCGGCTCGGCCAACGCTCCTCGGTGGCCTCGACTCG
JMSF035I06+           GCATCCACACGCAACGACGTTTTGGCGGCTCGGCCAACGCTCCTCGGTGGCCTCGACTCG
                      ____________________________________________________________
consensus             GCATCCACACGCAACGACGTTTTGGCGGCTCGGCCAACGCTCCTCGGTGGCCTCGACTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS053E04+           CCGTATTATATCTCCGAGAATCTCCGGCAGCATGTTCGCCCACGAAACCGCATCTCCGCA
JMSF018C05+           CCGTATTATATCTCCGAGAATCTCCGGCAGCATGTTCGCCCACGAAACCGCATCTCCGCA
JMSF035I06+           CCGTATTATATCTCCGAGAATCTCCGGCAGCATGTTCGCCCACGAAACCGCATCTCCGCA
                      ____________________________________________________________
consensus             CCGTATTATATCTCCGAGAATCTCCGGCAGCATGTTCGCCCACGAAACCGCATCTCCGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS053E04+           ACCGGATTCCTCGACAGCACCGCCACTTTTCTCGTCGTATTCATCTCTAACATTGACGAT
JMSF018C05+           ACCGGATTCCTCGACAGCACCGCCACTTTTCTCGTCGTATTCATCTCTAACATTGACGAT
JMSF035I06+           ACCGGATTCCTCGACAGCACCGCCACTTTTCTCGTCGTATTCATCTCTAACATTGACGAT
                      ____________________________________________________________
consensus             ACCGGATTCCTCGACAGCACCGCCACTTTTCTCGTCGTATTCATCTCTAACATTGACGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS053E04+           GCAACAATCATCCCGCGCTCCCCTTACACAAGTCTCCGAAGCCTTAGATTCTCGAGAAGC
JMSF018C05+           GCAACAATCATCCCGCGCTCCCCTTACACAAGTCTCCGAAGCCTTAGATTCTCGAGAAGC
JMSF035I06+           GCAACAATCATCCCGCGCTCCCCTTACACAAGTCTCCGAAGCCTTAGATTCTCGAGAAGC
                      ____________________________________________________________
consensus             GCAACAATCATCCCGCGCTCCCCTTACACAAGTCTCCGAAGCCTTAGATTCTCGAGAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS053E04+           TCTGGAGAAAGTATGCGATCCACTTAGGTTTCTACGCGGGAGAAACGAACGCCTCAGTGA
JMSF018C05+           TCTGGAGAAAGTATGCGATCCACTTAGGTTTCTACGCGGGAGAAACGAACGCCTCAGTGA
JMSF035I06+           TCTGGAGAAAGTATGCGATCCACTTAGGTTTCTACGCGGGAGAAACGAACGCCTCAGTGA
                      ____________________________________________________________
consensus             TCTGGAGAAAGTATGCGATCCACTTAGGTTTCTACGCGGGAGAAACGAACGCCTCAGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS053E04+           CATCCTTTCCTTTCAGACCTTCCCTCTTTCTCT                           
JMSF018C05+           CATCCTTTCCTTTCAGACCTTCCCTCTTTCTCTCTCTAATTTTCTCCAGGTAGTTCTG  
JMSF035I06+           CATCCTTTCCTTTCAGACCTTCCCTCTTTCTCTCTCTAATTTTCTCCAGGTAGTTCTGTC
                      ____________________________________________________________
consensus             CATCCTTTCCTTTCAGACCTTCCCTCTTTCTCTCTCTAATTTTCTCCAGGTAGTTCTGTC