Contig 002349:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN042M18Sequence540002349 (4)ref|XP_002275043.1|2e-45PREDICTED: calvin cycle protein CP12-1, chloroplastic [Vitis vinifera]
JMFS152D06Sequence502002349 (4)ref|XP_002275043.1|1e-45PREDICTED: calvin cycle protein CP12-1, chloroplastic [Vitis vinifera]
JMSF035D06Sequence633002349 (4)ref|XP_002275043.1|7e-45PREDICTED: calvin cycle protein CP12-1, chloroplastic [Vitis vinifera]576002349 (4)ref|XP_002275043.1|4e-45PREDICTED: calvin cycle protein CP12-1, chloroplastic [Vitis vinifera]

Alignment

This contig is upended


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rJMSF035D06+                                     AAAGGAGCCATTCAATTCAAGAACCTCACTATT
JMFS152D06-                                                        AAGAACCTCACTATT
JMFN042M18+                                                        AAGAACCTCACTATT
JMSF035D06-                                      AAAGGAGCCATTCAATTCAAGAACCTCACTATT
                      ____________________________________________________________
consensus                                        AAAGGAGCCATTCAATTCAAGAACCTCACTATT
 
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rJMSF035D06+          AGCTAAAATGGTGGTTATTGCCGGTGTTAATCTCACTACTACCTCCCCAGGAATCTTAGC
JMFS152D06-           AGCTAAAATGGTGGTTATTGCCGGTGTTAATCTCACTACTACCTCCCCAGGAATCTTAGC
JMFN042M18+           AGCTAAAATGGTGGTTATTGCCGGTGTTAATCTCACTACTACCTCCCCAGGAATCTTAGC
JMSF035D06-           AGCTAAAATGGTGGTTATTGCCGGTGTTAATCTCACTACTACCTCCCCAGGAATCTTAGC
                      ____________________________________________________________
consensus             AGCTAAAATGGTGGTTATTGCCGGTGTTAATCTCACTACTACCTCCCCAGGAATCTTAGC
 
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rJMSF035D06+          GAACTCACCAAAGGCGGCGGCGCAAACCACCAAGTTCACCACGTGCCTAAACAGGCCATG
JMFS152D06-           GAACTCACCAAAGGCGGCGGCGCAAACCACCAAGTTCACCACGTGCCTAAACAGGCCATG
JMFN042M18+           GAACTCACCAAAGGCGGCGGCGCAAACCACCAAGTTCACCACGTGCCTAAACAGGCCATG
JMSF035D06-           GAACTCACCAAAGGCGGCGGCGCAAACCACCAAGTTCACCACGTGCCTAAACAGGCCATG
                      ____________________________________________________________
consensus             GAACTCACCAAAGGCGGCGGCGCAAACCACCAAGTTCACCACGTGCCTAAACAGGCCATG
 
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rJMSF035D06+          GAAGAGGGCCGGCGTCACCGCGGGTCTATTCAGGCCCGGGAGGATGTGCGTGGTGAGGCC
JMFS152D06-           GAAGAGGGCCGGCGTCACCGCGGGTCTATTCAGGCCCGGGAGGATGTGCGTGGTGAGGCC
JMFN042M18+           GAAGAGGGCCGGCGTCACCGCGGGTCTATTCAGGCCCGGGAGGATGTGCGTGGTGAGGCC
JMSF035D06-           GAAGAGGGCCGGCGTCACCGCGGGTCTATTCAGGCCCGGGAGGATGTGCGTGGTGAGGCC
                      ____________________________________________________________
consensus             GAAGAGGGCCGGCGTCACCGCGGGTCTATTCAGGCCCGGGAGGATGTGCGTGGTGAGGCC
 
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rJMSF035D06+          TGTGTGCGCCGCACCGGACAGCAGCCTGTCGGAGAAGGTGGCAGACAGCGTGAAGAATGC
JMFS152D06-           TGTGTGCGCCGCACCGGACAGCAGCCTGTCGGAGAAGGTGGCAGACAGCGTGAAGAATGC
JMFN042M18+           TGTGTGCGCCGCACCGGACAGCAGCCTGTCGGAGAAGGTGGCAGACAGCGTGAAGAATGC
JMSF035D06-           TGTGTGCGCCGCACCGGACAGCAGCCTGTCGGAGAAGGTGGCAGACAGCGTGAAGAATGC
                      ____________________________________________________________
consensus             TGTGTGCGCCGCACCGGACAGCAGCCTGTCGGAGAAGGTGGCAGACAGCGTGAAGAATGC
 
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rJMSF035D06+          TGAGGAAGCCTGCGCCGGCGACCCCACAAGCGGAGAGTGCGTGGCGGCGTGGGACGAGGT
JMFS152D06-           TGAGGAAGCCTGCGCCGGCGACCCCACAAGCGGAGAGTGCGTGGCGGCGTGGGACGAGGT
JMFN042M18+           TGAGGAAGCCTGCGCCGGCGACCCCACAAGCGGAGAGTGCGTGGCGGCGTGGGACGAGGT
JMSF035D06-           TGAGGAAGCCTGCGCCGGCGACCCCACAAGCGGAGAGTGCGTGGCGGCGTGGGACGAGGT
                      ____________________________________________________________
consensus             TGAGGAAGCCTGCGCCGGCGACCCCACAAGCGGAGAGTGCGTGGCGGCGTGGGACGAGGT
 
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rJMSF035D06+          GGAGGAGCTGAGCGCGGCGGCGAGCCATGCAAGGGACAAGAAGAAAGATTCCAATCCTCT
JMFS152D06-           GGAGGAGCTGAGCGCGGCGGCGAGCCATGCAAGGGACAAGAAGAAAGATTCCAATCCTCT
JMFN042M18+           GGAGGAGCTGAGCGCGGCGGCGAGCCATGCAAGGGACAAGAAGAAAGATTCCAATCCTCT
JMSF035D06-           GGAGGAGCTGAGCGCGGCGGCGAGCCATGCAAGGGACAAGAAGAAAGATTCCAATCCTCT
                      ____________________________________________________________
consensus             GGAGGAGCTGAGCGCGGCGGCGAGCCATGCAAGGGACAAGAAGAAAGATTCCAATCCTCT
 
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rJMSF035D06+          GGAGGAGTTCTGCAAGGATAACCCTGAGAGCGAGGAGTGTCGCACTTATGATAATTAATT
JMFS152D06-           GGAGGAGTTCTGCAAGGATAACCCTGAGAGCGAGGAGTGTCGCACTTATGATAATTAATT
JMFN042M18+           GGAGGAGTTCTGCAAGGATAACCCTGAGAGCGAGGAGTGTCGCACTTATGATAATTAATT
JMSF035D06-           GGAGGAGTTCTGCAAGGATAACCCTGAGAGCGAGGAGTGTCGCACTTATGATAATTAATT
                      ____________________________________________________________
consensus             GGAGGAGTTCTGCAAGGATAACCCTGAGAGCGAGGAGTGTCGCACTTATGATAATTAATT
 
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rJMSF035D06+          TTATTTTTATTTGCAGCATATATGTAATCTTAATTATATTATAATATATATATTCTTCCT
JMFS152D06-           TTATTTTTATTTGCAGCATATATGTAATCTTAATTATATTATAATATATATATTCTTCCT
JMFN042M18+           TTATTTTTATTTGCAGCATATATGTAATCTTAATTATATTATAATATATATATTCTTCCT
JMSF035D06-           TTATTTTTATTTGCAGCATATATGTAATCTTAATTATATTATAATATATATATTCTTCCT
                      ____________________________________________________________
consensus             TTATTTTTATTTGCAGCATATATGTAATCTTAATTATATTATAATATATATATTCTTCCT
 
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rJMSF035D06+          TTATATATCCAACAAATTAGCTTGCCTGGCCTGTTCTTGCATGCATGTTTTAATTTCGAA
JMFS152D06-           TTAT                                                        
JMFN042M18+           TTAT                                                        
JMSF035D06-           TTATATATCCAACAAATTAGCTTGCCTGGCCTGTTCTTGCATGCATGTTTTAATTTCGAA
                      ____________________________________________________________
consensus             TTATATATCCAACAAATTAGCTTGCCTGGCCTGTTCTTGCATGCATGTTTTAATTTCGAA
 
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rJMSF035D06+          CTG                                                         
JMSF035D06-           CTGCTCAGACAGCTCTCTGTTGTTAAATCATTAATTTATTAGACTTCACCAAAAAAAAAA
                      ____________________________________________________________
consensus             CTGCTCAGACAGCTCTCTGTTGTTAAATCATTAATTTATTAGACTTCACCAAAAAAAAAA