Contig 002348:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017H03Sequence262002348 (2)dbj|BAK02564.1|2e-13predicted protein [Hordeum vulgare subsp. vulgare]735004241 (2)ref|XP_009626784.1|2e-106PREDICTED: probable protein phosphatase 2C 60 [Nicotiana tomentosiformis]
JMSF034O21Sequence613002348 (2)gb|KJB67988.1|7e-63hypothetical protein B456_010G222200 [Gossypium raimondii]701004241 (2)ref|XP_008461186.1|8e-102PREDICTED: probable protein phosphatase 2C 60 [Cucumis melo] ref|XP_008461187.1|

Alignment

This contig is upended


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JMSF034O21+                                                          TAATCAGAGAGAC
                      ____________________________________________________________
consensus                                                            TAATCAGAGAGAC
 
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JMSF034O21+           CTTCNTCCTTAGAAGGCCAATCAGTGGTTTTACCCTTATTTTCACTGCTCCTAGGGGACC
                      ____________________________________________________________
consensus             CTTCNTCCTTAGAAGGCCAATCAGTGGTTTTACCCTTATTTTCACTGCTCCTAGGGGACC
 
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JMSF034O21+           ATAAGCCTTCAACCACATCTTTCATTTTGTCACTGTCAGTCAAACTCGCTAACTCTTTCC
                      ____________________________________________________________
consensus             ATAAGCCTTCAACCACATCTTTCATTTTGTCACTGTCAGTCAAACTCGCTAACTCTTTCC
 
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JMSF034O21+           GACTTCCTAGACTACGCATCATTTCATCCATTCTGAGAAATGATTTCTGAATTGAGGTGT
                      ____________________________________________________________
consensus             GACTTCCTAGACTACGCATCATTTCATCCATTCTGAGAAATGATTTCTGAATTGAGGTGT
 
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JMSF034O21+           CTAACTCCCCGGCAGAATATGCTTCATGTCTGAGAAACTGCTGGTGAAGATACTTTGCAC
                      ____________________________________________________________
consensus             CTAACTCCCCGGCAGAATATGCTTCATGTCTGAGAAACTGCTGGTGAAGATACTTTGCAC
 
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JMSF034O21+           AAAATTTAGCAACTTCATCACCTCCATGGCCATCATAAACACCAAAGAAAGCAGTGGAAG
                      ____________________________________________________________
consensus             AAAATTTAGCAACTTCATCACCTCCATGGCCATCATAAACACCAAAGAAAGCAGTGGAAG
 
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JMSF017H03+                                                TGATGCACGCCATCCTTGCATTG
JMSF034O21+           CGTCCAGGTTTGGATAGGCTGCATGAGCATCTTCCATTGATGCACGCCATCCTTGCATTG
                      ____________________________________________________________
consensus             CGTCCAGGTTTGGATAGGCTGCATGAGCATCTTCCATTGATGCACGCCATCCTTGCATTG
 
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JMSF017H03+           AAGCCAAGCCAAATTTTACTTTGTCATTCTCACCATCCTCCAAAAGCTTATCAGTTTTAG
JMSF034O21+           AAGCCAAGCCAAATTTTACTTTGTCATTCTCACCATCCTCCAAAAGCTTATCAGTTTTAG
                      ____________________________________________________________
consensus             AAGCCAAGCCAAATTTTACTTTGTCATTCTCACCATCCTCCAAAAGCTTATCAGTTTTAG
 
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JMSF017H03+           GACTGCTTAGATATATCCCCATTTTCCGCCGCCAATGCAGAGACCGGTTTCGCTCCGGAT
JMSF034O21+           GACTGCTTAGATATATCCCCATTTTCCGCCGCCAATGCAGAGACCGGTTTCGCTCCGGAT
                      ____________________________________________________________
consensus             GACTGCTTAGATATATCCCCATTTTCCGCCGCCAATGCAGAGACCGGTTTCGCTCCGGAT
 
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JMSF017H03+           AGAAATGCAAGCGAGAGAGAGAGAGAGAGGATCTGGAATTTAGTAAATGTGGGATCGGGT
JMSF034O21+           AGAAATGCAAGCGAGAGAGAGAGAGAGAGGATCTGGAATTTAGTAAATGTGGGATCGGGT
                      ____________________________________________________________
consensus             AGAAATGCAAGCGAGAGAGAGAGAGAGAGGATCTGGAATTTAGTAAATGTGGGATCGGGT
 
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JMSF017H03+           TTGAGGGGAAGATGATTGATTGTAGTGGTTTGATTATTGTTATCTCAGGCTGAGCCGC  
JMSF034O21+           TTGAGGGGAAGATGATTGATTGTAGTGGTTTGATTATTGTTATCTCAGGCTGAGCCGCTC
                      ____________________________________________________________
consensus             TTGAGGGGAAGATGATTGATTGTAGTGGTTTGATTATTGTTATCTCAGGCTGAGCCGCTC