Contig 002346:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF034M14Sequence690002346 (2)gb|AAA97903.1|3e-120secreted glycoprotein 3 [Ipomoea trifida]771011377 (2)ref|XP_011097955.1|1e-67PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27
JMSF037C06Sequence697002346 (2)gb|AAA97903.1|8e-127secreted glycoprotein 3 [Ipomoea trifida]713011377 (2)ref|XP_011097955.1|7e-28PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27

Alignment

This contig is upended


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JMSF037C06+                   TTTCATAGAAAGGGCTCTTTCTTGAATTTGGTGACCCACTAAACTGGAAACC
JMSF034M14+                                         TGAATTTGGTGACCCACTAAACTGGAAACC
                      ____________________________________________________________
consensus                     TTTCATAGAAAGGGCTCTTTCTTGAATTTGGTGACCCACTAAACTGGAAACC
 
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JMSF037C06+           ATTCCACGGCCCAGATCTATACACCACAGCTGAGCCCTTATTCAGGAAATTCTGTGGAAA
JMSF034M14+           ATTCCACGGCCCAGATCTATACACCACAGCTGAGCCCTTATTCAGGAAATTCTGTGGAAA
                      ____________________________________________________________
consensus             ATTCCACGGCCCAGATCTATACACCACAGCTGAGCCCTTATTCAGGAAATTCTGTGGAAA
 
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JMSF037C06+           ACCATTGCGATTCATGTAATACATATAATCCCCAGTTGATGGGTCTTCTCTGCTCTTCCA
JMSF034M14+           ACCATTGCGATTCATGTAATACATATAATCCCCAGTTGATGGGTCTTCTCTGCTCTTCCA
                      ____________________________________________________________
consensus             ACCATTGCGATTCATGTAATACATATAATCCCCAGTTGATGGGTCTTCTCTGCTCTTCCA
 
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JMSF037C06+           GGATGTTAGGTATGTCTCATGCCCAGTTACAAAGTTCCAACCTAATTTCATCCCTGGCAA
JMSF034M14+           GGATGTTAGGTATGTCTCATGCCCAGTTACAAAGTTCCAACCTAATTTCATCCCTGGCAA
                      ____________________________________________________________
consensus             GGATGTTAGGTATGTCTCATGCCCAGTTACAAAGTTCCAACCTAATTTCATCCCTGGCAA
 
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JMSF037C06+           ATATGTATCAGTTGGGTAATCAAAACTCTGCCACACAAAATCCTTCTCTTCATTGCCATC
JMSF034M14+           ATATGTATCAGTTGGGTAATCAAAACTCTGCCACACAAAATCCTTCTCTTCATTGCCATC
                      ____________________________________________________________
consensus             ATATGTATCAGTTGGGTAATCAAAACTCTGCCACACAAAATCCTTCTCTTCATTGCCATC
 
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JMSF037C06+           CCCTGCGTCTTTAATGACAAGATTCCCAGAACCCAGAAGCTGCGCAATGGGATTCTGCAC
JMSF034M14+           CCCTGCGTCTTTAATGACAAGATTCCCAGAACCCAGAAGCTGCGCAATGGGATTCTGCAC
                      ____________________________________________________________
consensus             CCCTGCGTCTTTAATGACAAGATTCCCAGAACCCAGAAGCTGCGCAATGGGATTCTGCAC
 
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JMSF037C06+           TGTTCTTGAGGTATTTGTTGACCATATGGTGCTATTAGCTTCATTGAGGAGAACCAGAAC
JMSF034M14+           TGTTCTTGAGGTATTTGTTGACCATATGGTGCTATTAGCTTCATTGAGGAGAACCAGAAC
                      ____________________________________________________________
consensus             TGTTCTTGAGGTATTTGTTGACCATATGGTGCTATTAGCTTCATTGAGGAGAACCAGAAC
 
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JMSF037C06+           TCCGGGTTTGATGATTTTAAGGATTCCTGAGGTAGTATTCAGAGGGGTTTCCCGGTTGGC
JMSF034M14+           TCCGGGTTTGATGATTTTAAGGATTCCTGAGGTAGTATTCAGAGGGGTTTCCCGGTTGGC
                      ____________________________________________________________
consensus             TCCGGGTTTGATGATTTTAAGGATTCCTGAGGTAGTATTCAGAGGGGTTTCCCGGTTGGC
 
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JMSF037C06+           GACCCACACCACAGTTTTAACAGATATGCTCTTGTACCATATGCCAAGATATAGGTTATT
JMSF034M14+           GACCCACACCACAGTTTTAACAGATATGCTCTTGTACCATATGCCAAGATATAGGTTATT
                      ____________________________________________________________
consensus             GACCCACACCACAGTTTTAACAGATATGCTCTTGTACCATATGCCAAGATATAGGTTATT
 
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JMSF037C06+           CCCAGACTTACCTGGGCTGAAGAAACCCAGTTCGAAGGCTCCATTAGAGGAAACAATGGC
JMSF034M14+           CCCAGACTTACCTGGGCTGAAGAAACCCAGTTCGAAGGCTCCATTAGAGGAAACAATGGC
                      ____________________________________________________________
consensus             CCCAGACTTACCTGGGCTGAAGAAACCCAGTTCGAAGGCTCCATTAGAGGAAACAATGGC
 
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JMSF037C06+           GGTCTCTCCTTTACCATCTTTCACGGACAAACTTGCCGTTATGGTATCAGTTGCGCAGGA
JMSF034M14+           GGTCTCTCCTTTACCATCTTTCACGGACAAACTNGCCGTTATGGTATCAGTTGCGCAGGA
                      ____________________________________________________________
consensus             GGTCTCTCCTTTACCATCTTTCACGGACAAACTTGCCGTTATGGTATCAGTTGCGCAGGA
 
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JMSF037C06+           AATCTTGTGAAAGAGAAGAAAGAAGAGTAGGGAAAAGCAATGGT                
JMSF034M14+           AATCTTGTGAAAGAGAAGAAAGAAGAGTAGGGAAAAGCAATGGTGCCTTGATGAACTCCT
                      ____________________________________________________________
consensus             AATCTTGTGAAAGAGAAGAAAGAAGAGTAGGGAAAAGCAATGGTGCCTTGATGAACTCCT