Contig 002338:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF033K13Sequence626002338 (2)ref|XP_006340903.1|1e-96PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic-like [Solanum671014078 (2)gb|KDO55729.1|4e-87hypothetical protein CISIN_1g011872mg [Citrus sinensis]
JMSF042D22Sequence756002338 (2)ref|XP_006340903.1|2e-148PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic-like [Solanum777014078 (2)gb|KDO55729.1|5e-72hypothetical protein CISIN_1g011872mg [Citrus sinensis]

Alignment

This contig is upended


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JMSF042D22+                             TTATCGAGCCCTTTCTCGCGTTCCATTATCCACACAATTAGT
                      ____________________________________________________________
consensus                               TTATCGAGCCCTTTCTCGCGTTCCATTATCCACACAATTAGT
 
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JMSF042D22+           GCCTAAAACATAAAGTTTTTCCAAACCCAAATAGTGCTCGACCGATCTTAAAGCTTGTAC
                      ____________________________________________________________
consensus             GCCTAAAACATAAAGTTTTTCCAAACCCAAATAGTGCTCGACCGATCTTAAAGCTTGTAC
 
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JMSF042D22+           TTGGCAACCAACACCACAAAACAGAAGTCGCTTCACACCAGCAGCCTCAACTAAAGCAAG
                      ____________________________________________________________
consensus             TTGGCAACCAACACCACAAAACAGAAGTCGCTTCACACCAGCAGCCTCAACTAAAGCAAG
 
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JMSF042D22+           AGTATTCAAATTAGGAGACAGTGTTGGCTTGACGCCTTTAGCTGCTAGTACTTCCTCTGG
                      ____________________________________________________________
consensus             AGTATTCAAATTAGGAGACAGTGTTGGCTTGACGCCTTTAGCTGCTAGTACTTCCTCTGG
 
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JMSF042D22+           TGTCCTCGCTAAGACAGGTCGAGGAGCAAATCTATCTTCCGGATCACTCTGCACACATAT
JMSF033K13+              CCTCGCTAAGACAGGTCGAGGAGCAAATCTATCTTCCGGATCACTCTGCACACATAT
                      ____________________________________________________________
consensus             TGTCCTCGCTAAGACAGGTCGAGGAGCAAATCTATCTTCCGGATCACTCTGCACACATAT
 
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JMSF042D22+           AACAGCTTCCACCATACCAGTTTTCAGCATCTCTATTGCGATTGTTGTCACTATGCCTGT
JMSF033K13+           AACAGCTTCCACCATACCAGTTTTCAGCATCTCTATTGCGATTGTTGTCACTATGCCTGT
                      ____________________________________________________________
consensus             AACAGCTTCCACCATACCAGTTTTCAGCATCTCTATTGCGATTGTTGTCACTATGCCTGT
 
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JMSF042D22+           CCATTGAGCTCCTTCCAAAGGCTTAGTTTTGCGAGCATACAATAATTCCTCATGGACACC
JMSF033K13+           CCATTGAGCTCCTTCCAAAGGCTTAGTTTTGCGAGCATACAATAATTCCTCATGGACACC
                      ____________________________________________________________
consensus             CCATTGAGCTCCTTCCAAAGGCTTAGTTTTGCGAGCATACAATAATTCCTCATGGACACC
 
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JMSF042D22+           CATATAAGTCTCATCCAATGAATCAACTTTCCTTCCTCTGCCATGTACAACAGGTTCCAA
JMSF033K13+           CATATAAGTCTCATCCAATGAATCAACTTTCCTTCCTCTGCCATGTACAACAGGTTCCAA
                      ____________________________________________________________
consensus             CATATAAGTCTCATCCAATGAATCAACTTTCCTTCCTCTGCCATGTACAACAGGTTCCAA
 
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JMSF042D22+           GGCCTCAATTCTAGACATGCCATCCCCCAAGAAAGCACAAGCATTTTTAACATGGGCTAT
JMSF033K13+           GGCCTCAATTCTAGACATGCCATCCCCCAAGAAAGCACAAGCATTTTTAACATGGGCTAT
                      ____________________________________________________________
consensus             GGCCTCAATTCTAGACATGCCATCCCCCAAGAAAGCACAAGCATTTTTAACATGGGCTAT
 
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JMSF042D22+           GTAATAAGTATCACACAACCCGCAATGGCTGCAGTGGTCCTTAGCTGGGTAGGTCCCACC
JMSF033K13+           GTAATAAGTATCACACAACCCGCAATGGCTGCAGTGGTCCTTAGCTGGGTAGGTCCCACC
                      ____________________________________________________________
consensus             GTAATAAGTATCACACAACCCGCAATGGCTGCAGTGGTCCTTAGCTGGGTAGGTCCCACC
 
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JMSF042D22+           AGGAGGAATGGGTTTGGATTTCTGCCTCCAATCTTCTCTGAGCTTCAATGGTTTTGGGTT
JMSF033K13+           AGGAGGAATGGGTTTGGATTTCTGCCTCCAATCTTCTCTGAGCTTCAATGGTTTTGGGTT
                      ____________________________________________________________
consensus             AGGAGGAATGGGTTTGGATTTCTGCCTCCAATCTTCTCTGAGCTTCAATGGTTTTGGGTT
 
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JMSF042D22+           TGTGTTTGCTTCTTTAGATGCAGAGACAATAGAGAAGGTGAAAGGCGAAGGAGAGAGCTT
JMSF033K13+           TGTGTTTGCTTCTTTAGATGCAGAGACAATAGAGAAGGTGAAAGGCGAAGGAGAGAGCTT
                      ____________________________________________________________
consensus             TGTGTTTGCTTCTTTAGATGCAGAGACAATAGAGAAGGTGAAAGGCGAAGGAGAGAGCTT
 
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JMSF042D22+           TGCACTGAGAAGAGCCATGGCTTCCACATCAACTGCCAACTGAGAGTTTCACT       
JMSF033K13+           TGCACTGAGAAGAGCCATGGCTTCCACATCAACTGCCAACTGAGAGTTTCACTGTCTTAC
                      ____________________________________________________________
consensus             TGCACTGAGAAGAGCCATGGCTTCCACATCAACTGCCAACTGAGAGTTTCACTGTCTTAC