Contig 002330:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF031A11Sequence655002330 (3)gb|KDO85205.1|3e-29hypothetical protein CISIN_1g018859mg [Citrus sinensis] gb|KDO85206.1| hypotheti758001409 (2)ref|XP_006355276.1|353PREDICTED: uncharacterized protein LOC102586731 [Solanum tuberosum]
JMSF032O07Sequence695002330 (3)gb|KDO85205.1|5e-37hypothetical protein CISIN_1g018859mg [Citrus sinensis] gb|KDO85206.1| hypotheti691001409 (2)ref|XP_006355276.1|313PREDICTED: uncharacterized protein LOC102586731 [Solanum tuberosum]
JMSF036A15Sequence401002330 (3)ref|XP_009758629.1|85.9PREDICTED: uncharacterized protein LOC104211285, partial [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF032O07+                                    TCTTCATACTTAAGAGGACTAGAGATGCNTCTTCT
                      ____________________________________________________________
consensus                                      TCTTCATACTTAAGAGGACTAGAGATGCNTCTTCT
 
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JMSF031A11+                ATCTCAATTGACCACGCCGAACGAGATCAGCCACCGTGCCAGGACTGCTATATCT
JMSF036A15+                                                                    TCT
JMSF032O07+           ATCAGATCTCAATTGACCACGCCGAACGAGATCAGCCACCGTGCCAGGACTGCTATATCT
                      ____________________________________________________________
consensus             ATCAGATCTCAATTGACCACGCCGAACGAGATCAGCCACCGTGCCAGGACTGCTATATCT
 
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JMSF031A11+           TGATTTTCTCAACATGTGATTTCTCACAGCAATAATCAGCAAAGTTGCTATCACAAATAT
JMSF036A15+           TGATTTTCTCAACATGTGATTTCTCACAGCAATAATCAGCAAAGTTGCTATCACAAATAT
JMSF032O07+           TGATTTTCTCAACATGTGATTTCTCACAGCAATAATCAGCAAAGTTGCTATCACAAATAT
                      ____________________________________________________________
consensus             TGATTTTCTCAACATGTGATTTCTCACAGCAATAATCAGCAAAGTTGCTATCACAAATAT
 
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JMSF031A11+           ACCAACTGCAAACCCAGCACTCGGATGCTTTTTTGTCAAGAAAACGATGGGAGGGCAAGA
JMSF036A15+           ACCAACTGCAAACCCAGCACTCGGATGCTTTTTTGTCAAGAAANCGATGGGAGGGCAAGA
JMSF032O07+           ACCAACTGCAAACCCAGCACTCGGATGCTTTTTTGTCAAGAAAACGATGGGAGGGCAAGA
                      ____________________________________________________________
consensus             ACCAACTGCAAACCCAGCACTCGGATGCTTTTTTGTCAAGAAAACGATGGGAGGGCAAGA
 
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JMSF031A11+           GCCAACAGTCACTTGCAATTTAGTAATCACATTTTTCGGAATCAGTATAATCTTATTCTT
JMSF036A15+           GCCAACAGTCACTTGCAATTTAGTAATCACATTTTTCGGAATCAGNATAATCCTATTCTT
JMSF032O07+           GCCAACAGTCACTTGCAATTTAGTAATCACATTTTTCGGAATCAGTATAATCTTATTCTT
                      ____________________________________________________________
consensus             GCCAACAGTCACTTGCAATTTAGTAATCACATTTTTCGGAATCAGTATAATCTTATTCTT
 
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JMSF031A11+           AGATTCAACAACGTTGCTTTCCTCCGGAAGTTGCCTGACATCATCACCATTCAATGAATT
JMSF036A15+           AGATTCAACAACGTTGCTTTCCTCCGGAAGTTGCCTGACATCATCACCATTCAATGAATT
JMSF032O07+           AGATTCAACAACGTTGCTTTCCTCCGGAAGTTGCCTGACATCATCACCATTCAATGAATT
                      ____________________________________________________________
consensus             AGATTCAACAACGTTGCTTTCCTCCGGAAGTTGCCTGACATCATCACCATTCAATGAATT
 
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JMSF031A11+           GCGTGCAGCTCTTAATTCAATCCTTTTGAAAATATAGCTTCTATTGAAGCTATTGTAGCC
JMSF036A15+           GCGTGCAGCTCTTAATTCAATCCTTTTGAAAATATAGCTTNTATTGAAGCTATTGTAGCC
JMSF032O07+           GCGTGCAGCTCTTAATTCAATCCTTTTGAAAATATAGCTTCTATTGAAGCTATTGTAGCC
                      ____________________________________________________________
consensus             GCGTGCAGCTCTTAATTCAATCCTTTTGAAAATATAGCTTCTATTGAAGCTATTGTAGCC
 
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JMSF031A11+           GCGGTGGAGCCAAAATCGTGCTCTGAATTCTAGCAGGCTTGGCGAAACTCGATGCTGAAA
JMSF036A15+           GCGGTGGAGCCAAAATCGTGCTCTGAATTCTAGCAGGCTTGGCGAAACTNGATGCTGAAA
JMSF032O07+           GCGGTGGAGCCAAAATCGTGCTCTGAATTCTAGCAGGCTTGGCGAAACTCGATGCTGAAA
                      ____________________________________________________________
consensus             GCGGTGGAGCCAAAATCGTGCTCTGAATTCTAGCAGGCTTGGCGAAACTCGATGCTGAAA
 
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JMSF031A11+           TGAGACCGTATGAAATTGAAGAGTCCAAACTGAAGCCATTTTTTTGTTGTTCTTATTCAA
JMSF036A15+           TGAGACCGTATGAAATTGAAGAGTCCAAACTGAAGCCA                      
JMSF032O07+           TGAGACCGTATGAAATTGAAGAGTCCAAACTGAAGCCATTTTTTTGTTGTTCTTATTCAA
                      ____________________________________________________________
consensus             TGAGACCGTATGAAATTGAAGAGTCCAAACTGAAGCCATTTTTTTGTTGTTCTTATTCAA
 
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JMSF031A11+           GGAAGAAAAATGCTCATTCTCGCTGCAAATTGTAAAATTAGGGCTAGCGAGAAAGAAGGA
JMSF032O07+           GGAAGAAAAATGCTCATTCTCGCTGCAAATTGTAAAATTAGGGCTAGCGAGAAAGAAGGA
                      ____________________________________________________________
consensus             GGAAGAAAAATGCTCATTCTCGCTGCAAATTGTAAAATTAGGGCTAGCGAGAAAGAAGGA
 
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JMSF031A11+           TAATCTAAAGGAACCGCAAGATTACCGGAAGATGGCCACCGGAAGAGCTCAAAATTGCGC
JMSF032O07+           TAATCTAAAGGAACCGCAAGATTACCGGAAGATGGCCACCGGAAGAGCTCAAAATTGCGC
                      ____________________________________________________________
consensus             TAATCTAAAGGAACCGCAAGATTACCGGAAGATGGCCACCGGAAGAGCTCAAAATTGCGC
 
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JMSF031A11+           CGCCGTTATATCACCGGCCAGAAATCCGGAGATTTTCTGCTAGGCAGTGGCGAGTACACC
JMSF032O07+           CGCCGTTATATCACCGGCCAGAAATCCGGAGATTTTCTGCTAGGCAGTGGCGAGTACACC
                      ____________________________________________________________
consensus             CGCCGTTATATCACCGGCCAGAAATCCGGAGATTTTCTGCTAGGCAGTGGCGAGTACACC