clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF040J06 | Sequence | 506 | 002328 (4) | emb|CDP14880.1| | 6e-71 | unnamed protein product [Coffea canephora] | 725 | 005733 (4) | ref|XP_009626986.1| | 3e-71 | PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Nicotiana tomentosiformis] |
JMFS115H04 | Sequence | 624 | 002328 (4) | emb|CDP14880.1| | 4e-108 | unnamed protein product [Coffea canephora] | |||||
JMSF032J19 | Sequence | 673 | 002328 (4) | emb|CDP14880.1| | 4e-92 | unnamed protein product [Coffea canephora] | 744 | 005733 (4) | ref|XP_009626986.1| | 2e-72 | PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Nicotiana tomentosiformis] |
JMSF033H01 | Sequence | 705 | 002328 (4) | emb|CDP14880.1| | 3e-112 | unnamed protein product [Coffea canephora] | 722 | 005733 (4) | ref|XP_009626986.1| | 2e-72 | PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMFS115H04+ TCACCTTCACATATATTCTATCACCCACG
____________________________________________________________
consensus TCACCTTCACATATATTCTATCACCCACG
. : . : . : . : . : . :
JMFS115H04+ AAGAACACAACACATGAAATCAGCATGAACAGCGCCGGAATCCCCAGTCCGATGGGCCAG
JMSF033H01+ ATGAAATCAGCATGAACAGCGCCGGAATCCCCAGTCCGATGGGCCAG
____________________________________________________________
consensus AAGAACACAACACATGAAATCAGCATGAACAGCGCCGGAATCCCCAGTCCGATGGGCCAG
. : . : . : . : . : . :
JMFS115H04+ CTAACCTCGGATTGAATGTAAACCACCAGCGTCACCGACATCATCTGCGCGAAAGTTAAG
JMSF033H01+ CTAACCTCGGATTGAATGTAAACCACCAGCGTCACCGACATCATCTGCGCGAAAGTTAAG
JMSF032J19+ CGCGAAAGTTAAG
____________________________________________________________
consensus CTAACCTCGGATTGAATGTAAACCACCAGCGTCACCGACATCATCTGCGCGAAAGTTAAG
. : . : . : . : . : . :
JMFS115H04+ GTGAAGAAGTACCAGTTGAAGAAGCTGTTGATGCCCCTCTTCCCTGATTCTGTCTTCGGG
JMSF033H01+ GTGAAGAAGTACCAGTTGAAGAAGCTGTTGATGCCCCTCTTCCCTGATTCTGTCTTCGGG
JMSF032J19+ GTGAAGAAGTACCAGTTGAAGAAGCTGTTGATGCCCCTCTTCCCTGATTCTGTCTTCGGG
____________________________________________________________
consensus GTGAAGAAGTACCAGTTGAAGAAGCTGTTGATGCCCCTCTTCCCTGATTCTGTCTTCGGG
. : . : . : . : . : . :
JMFS115H04+ TTGAACTGGTCCGCCCCGAATGCCAAGTTGCACGGCCGGATTCCGGCGGCTCCCACCGTC
JMSF033H01+ TTGAACTGGTCCGCCCCGAATGCCAAGTTGCACGGCCGGATTCCGGCGGCTCCCACCGTC
JMFF040J06+ TCCGCCCCGAATGCCAAGTTGCACGGCCGGATTCCGGCGGCTCCCACCGTC
JMSF032J19+ TTGAACTGGTCCGCCCCGAATGCCAAGTTGCACGGCCGGATTCCGGCGGCTCCCACCGTC
____________________________________________________________
consensus TTGAACTGGTCCGCCCCGAATGCCAAGTTGCACGGCCGGATTCCGGCGGCTCCCACCGTC
. : . : . : . : . : . :
JMFS115H04+ AACATGGCGAACCCGCAGAGGAGAAACCCCATCTGCCCCCTCGTCGGCTCCACGCACTCC
JMSF033H01+ AACATGGCGAACCCGCAGAGGAGAAACCCCATCTGCCCCCTCGTCGGCTCCACGCACTCC
JMFF040J06+ AACATGGCGAACCCGCAGAGGAGAAACCCCATCTGCCCCCTCGTCGGCTCCACGCACTCC
JMSF032J19+ AACATGGCGAACCCGCAGAGGAGAAACCCCATCTGCCCCCTCGTCGGCTCCACGCACTCC
____________________________________________________________
consensus AACATGGCGAACCCGCAGAGGAGAAACCCCATCTGCCCCCTCGTCGGCTCCACGCACTCC
. : . : . : . : . : . :
JMFS115H04+ CCGCCGCCTTTTGTGCACCGCGGAGGATGCAGACTCTTCACTGCTGCCGTCAATGCTATC
JMSF033H01+ CCGCCGCCTTTTGTGCACCGCGGAGGATGCAGACTCTTCACTGCTGCCGTCAATGCTATC
JMFF040J06+ CCGCCGCCTTTTGTGCACCGCGGAGGATGCAGACTCTTCACTGCTGCCGTCAATGCTATC
JMSF032J19+ CCGCCGCCTTTTGTGCACCGCGGAGGATGCAGACTCTTCACTGCTGCCGTCAATGCTATC
____________________________________________________________
consensus CCGCCGCCTTTTGTGCACCGCGGAGGATGCAGACTCTTCACTGCTGCCGTCAATGCTATC
. : . : . : . : . : . :
JMFS115H04+ ATCATTAATCCCAGGAAAGAATTAACGGTGGAGATTCCCAAGGTTTTGTAGCGGCCTAAG
JMSF033H01+ ATCATTAATCCCAGGAAAGAATTAACGGTGGAGATTCCCAAGGTTTTGTAGCGGCCTAAG
JMFF040J06+ ATCATTAATCCCAGGAAAGAATTAACGGTGGAGATTCCCAAGGTTTTGTAGCGGCCTAAG
JMSF032J19+ ATCATTAATCCCAGGAAAGAATTAACGGTGGAGATTCCCAAGGTTTTGTAGCGGCCTAAG
____________________________________________________________
consensus ATCATTAATCCCAGGAAAGAATTAACGGTGGAGATTCCCAAGGTTTTGTAGCGGCCTAAG
. : . : . : . : . : . :
JMFS115H04+ TAGGTGTCACAAATGAAAGCGCCGAGGATGGTGGCGAAGTTGGTGGTTCCATTGAAGACA
JMSF033H01+ TAGGTGTCACAAATGAAAGCGCCGAGGATGGTGGCGAAGTTGGTGGTTCCATTGAAGACA
JMFF040J06+ TAGGTGTCACAAATGAAAGCGCCGAGGATGGTGGCGAAGTTGGTGGTTCCATTGAAGACA
JMSF032J19+ TAGGTGTCACAAATGAAAGCGCCGAGGATGGTGGCGAAGTTGGTGGTTCCATTGAAGACA
____________________________________________________________
consensus TAGGTGTCACAAATGAAAGCGCCGAGGATGGTGGCGAAGTTGGTGGTTCCATTGAAGACA
. : . : . : . : . : . :
JMFS115H04+ TTGAGAAGATTCGCCGCCGTTATGTGCTTCAAGTTGAATACTGTCGTGAGGTACACTAAC
JMSF033H01+ TTGAGAAGATTCGCCGCCGTTATGTGCTTCAAGTTGAATACTGTCGTGAGGTACACTAAC
JMFF040J06+ TTGAGAAGATTCGCCGCCGTTATGTGCTTCAAGTTGAATACTGTCGTGAGGTACACTAAC
JMSF032J19+ TTGAGAAGATTCGCCGCCGTTATGTGCTTCAAGTTGAATACTGTCGTGAGGTACACTAAC
____________________________________________________________
consensus TTGAGAAGATTCGCCGCCGTTATGTGCTTCAAGTTGAATACTGTCGTGAGGTACACTAAC
. : . : . : . : . : . :
JMFS115H04+ AGGTTGGACAGCGTGCCTATTGCTCCCAGCTTTTCGAATGTCTCGTTCCCT
JMSF033H01+ AGGTTGGACAGCGTGCCTATTGCTCCCAGCTTTTCGAATGTCTCGTTCCCTATAATGAAG
JMFF040J06+ AGGTTGGACAGCGTGCCTATTGCTCCCAGCTTTTCGAATGTCTCGTTCCCTATAATGAAG
JMSF032J19+ AGGTTGGACAGCGTGCCTATTGCTCCCAGCTTTTCGAATGTCTCGTTCCCTATAATGAAG
____________________________________________________________
consensus AGGTTGGACAGCGTGCCTATTGCTCCCAGCTTTTCGAATGTCTCGTTCCCTATAATGAAG
. : . : . : . : . : . :
JMSF033H01+ GGCATGGCTTTGATTCCTCGGTACTTGGGCGCCGGTTCTTCAATAACCGACGACTCATCA
JMFF040J06+ GGCATGGCTTTGATTCCTCGGTACTTGGGCGCCGGTTCTTCAATAACCGACGACTCATCA
JMSF032J19+ GGCATGGCTTTGATTCCTCGGTACTTGGGCGCCGGTTCTTCAATAACCGACGACTCATCA
____________________________________________________________
consensus GGCATGGCTTTGATTCCTCGGTACTTGGGCGCCGGTTCTTCAATAACCGACGACTCATCA
. : . : . : . : . : . :
JMSF033H01+ TGGCCGTTCATTACTGTTGTGGTTTTCTCCGCCTTCGCCGGAGATTCTCCTCCATGC
JMFF040J06+ TGGCCGTTCATTACTGTTGTGGTTTTCTCCGCCTT
JMSF032J19+ TGGCCGTTCATTACTGTTGTGGTTTTCTCCGCCTTCGCCGGAGATTCTCCTCCATGCTTA
____________________________________________________________
consensus TGGCCGTTCATTACTGTTGTGGTTTTCTCCGCCTTCGCCGGAGATTCTCCTCCATGCTTA
. : . : . : . : . : . :
JMSF032J19+ TTATCCTCCATTTCCACTCCCATTTATGTCTTCACTCAATTTAATTTTTGTTTTCTTTTC
____________________________________________________________
consensus TTATCCTCCATTTCCACTCCCATTTATGTCTTCACTCAATTTAATTTTTGTTTTCTTTTC