Contig 002328:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040J06Sequence506002328 (4)emb|CDP14880.1|6e-71unnamed protein product [Coffea canephora]725005733 (4)ref|XP_009626986.1|3e-71PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Nicotiana tomentosiformis]
JMFS115H04Sequence624002328 (4)emb|CDP14880.1|4e-108unnamed protein product [Coffea canephora]
JMSF032J19Sequence673002328 (4)emb|CDP14880.1|4e-92unnamed protein product [Coffea canephora]744005733 (4)ref|XP_009626986.1|2e-72PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Nicotiana tomentosiformis]
JMSF033H01Sequence705002328 (4)emb|CDP14880.1|3e-112unnamed protein product [Coffea canephora]722005733 (4)ref|XP_009626986.1|2e-72PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFS115H04+                                          TCACCTTCACATATATTCTATCACCCACG
                      ____________________________________________________________
consensus                                            TCACCTTCACATATATTCTATCACCCACG
 
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JMFS115H04+           AAGAACACAACACATGAAATCAGCATGAACAGCGCCGGAATCCCCAGTCCGATGGGCCAG
JMSF033H01+                        ATGAAATCAGCATGAACAGCGCCGGAATCCCCAGTCCGATGGGCCAG
                      ____________________________________________________________
consensus             AAGAACACAACACATGAAATCAGCATGAACAGCGCCGGAATCCCCAGTCCGATGGGCCAG
 
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JMFS115H04+           CTAACCTCGGATTGAATGTAAACCACCAGCGTCACCGACATCATCTGCGCGAAAGTTAAG
JMSF033H01+           CTAACCTCGGATTGAATGTAAACCACCAGCGTCACCGACATCATCTGCGCGAAAGTTAAG
JMSF032J19+                                                          CGCGAAAGTTAAG
                      ____________________________________________________________
consensus             CTAACCTCGGATTGAATGTAAACCACCAGCGTCACCGACATCATCTGCGCGAAAGTTAAG
 
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JMFS115H04+           GTGAAGAAGTACCAGTTGAAGAAGCTGTTGATGCCCCTCTTCCCTGATTCTGTCTTCGGG
JMSF033H01+           GTGAAGAAGTACCAGTTGAAGAAGCTGTTGATGCCCCTCTTCCCTGATTCTGTCTTCGGG
JMSF032J19+           GTGAAGAAGTACCAGTTGAAGAAGCTGTTGATGCCCCTCTTCCCTGATTCTGTCTTCGGG
                      ____________________________________________________________
consensus             GTGAAGAAGTACCAGTTGAAGAAGCTGTTGATGCCCCTCTTCCCTGATTCTGTCTTCGGG
 
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JMFS115H04+           TTGAACTGGTCCGCCCCGAATGCCAAGTTGCACGGCCGGATTCCGGCGGCTCCCACCGTC
JMSF033H01+           TTGAACTGGTCCGCCCCGAATGCCAAGTTGCACGGCCGGATTCCGGCGGCTCCCACCGTC
JMFF040J06+                    TCCGCCCCGAATGCCAAGTTGCACGGCCGGATTCCGGCGGCTCCCACCGTC
JMSF032J19+           TTGAACTGGTCCGCCCCGAATGCCAAGTTGCACGGCCGGATTCCGGCGGCTCCCACCGTC
                      ____________________________________________________________
consensus             TTGAACTGGTCCGCCCCGAATGCCAAGTTGCACGGCCGGATTCCGGCGGCTCCCACCGTC
 
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JMFS115H04+           AACATGGCGAACCCGCAGAGGAGAAACCCCATCTGCCCCCTCGTCGGCTCCACGCACTCC
JMSF033H01+           AACATGGCGAACCCGCAGAGGAGAAACCCCATCTGCCCCCTCGTCGGCTCCACGCACTCC
JMFF040J06+           AACATGGCGAACCCGCAGAGGAGAAACCCCATCTGCCCCCTCGTCGGCTCCACGCACTCC
JMSF032J19+           AACATGGCGAACCCGCAGAGGAGAAACCCCATCTGCCCCCTCGTCGGCTCCACGCACTCC
                      ____________________________________________________________
consensus             AACATGGCGAACCCGCAGAGGAGAAACCCCATCTGCCCCCTCGTCGGCTCCACGCACTCC
 
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JMFS115H04+           CCGCCGCCTTTTGTGCACCGCGGAGGATGCAGACTCTTCACTGCTGCCGTCAATGCTATC
JMSF033H01+           CCGCCGCCTTTTGTGCACCGCGGAGGATGCAGACTCTTCACTGCTGCCGTCAATGCTATC
JMFF040J06+           CCGCCGCCTTTTGTGCACCGCGGAGGATGCAGACTCTTCACTGCTGCCGTCAATGCTATC
JMSF032J19+           CCGCCGCCTTTTGTGCACCGCGGAGGATGCAGACTCTTCACTGCTGCCGTCAATGCTATC
                      ____________________________________________________________
consensus             CCGCCGCCTTTTGTGCACCGCGGAGGATGCAGACTCTTCACTGCTGCCGTCAATGCTATC
 
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JMFS115H04+           ATCATTAATCCCAGGAAAGAATTAACGGTGGAGATTCCCAAGGTTTTGTAGCGGCCTAAG
JMSF033H01+           ATCATTAATCCCAGGAAAGAATTAACGGTGGAGATTCCCAAGGTTTTGTAGCGGCCTAAG
JMFF040J06+           ATCATTAATCCCAGGAAAGAATTAACGGTGGAGATTCCCAAGGTTTTGTAGCGGCCTAAG
JMSF032J19+           ATCATTAATCCCAGGAAAGAATTAACGGTGGAGATTCCCAAGGTTTTGTAGCGGCCTAAG
                      ____________________________________________________________
consensus             ATCATTAATCCCAGGAAAGAATTAACGGTGGAGATTCCCAAGGTTTTGTAGCGGCCTAAG
 
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JMFS115H04+           TAGGTGTCACAAATGAAAGCGCCGAGGATGGTGGCGAAGTTGGTGGTTCCATTGAAGACA
JMSF033H01+           TAGGTGTCACAAATGAAAGCGCCGAGGATGGTGGCGAAGTTGGTGGTTCCATTGAAGACA
JMFF040J06+           TAGGTGTCACAAATGAAAGCGCCGAGGATGGTGGCGAAGTTGGTGGTTCCATTGAAGACA
JMSF032J19+           TAGGTGTCACAAATGAAAGCGCCGAGGATGGTGGCGAAGTTGGTGGTTCCATTGAAGACA
                      ____________________________________________________________
consensus             TAGGTGTCACAAATGAAAGCGCCGAGGATGGTGGCGAAGTTGGTGGTTCCATTGAAGACA
 
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JMFS115H04+           TTGAGAAGATTCGCCGCCGTTATGTGCTTCAAGTTGAATACTGTCGTGAGGTACACTAAC
JMSF033H01+           TTGAGAAGATTCGCCGCCGTTATGTGCTTCAAGTTGAATACTGTCGTGAGGTACACTAAC
JMFF040J06+           TTGAGAAGATTCGCCGCCGTTATGTGCTTCAAGTTGAATACTGTCGTGAGGTACACTAAC
JMSF032J19+           TTGAGAAGATTCGCCGCCGTTATGTGCTTCAAGTTGAATACTGTCGTGAGGTACACTAAC
                      ____________________________________________________________
consensus             TTGAGAAGATTCGCCGCCGTTATGTGCTTCAAGTTGAATACTGTCGTGAGGTACACTAAC
 
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JMFS115H04+           AGGTTGGACAGCGTGCCTATTGCTCCCAGCTTTTCGAATGTCTCGTTCCCT         
JMSF033H01+           AGGTTGGACAGCGTGCCTATTGCTCCCAGCTTTTCGAATGTCTCGTTCCCTATAATGAAG
JMFF040J06+           AGGTTGGACAGCGTGCCTATTGCTCCCAGCTTTTCGAATGTCTCGTTCCCTATAATGAAG
JMSF032J19+           AGGTTGGACAGCGTGCCTATTGCTCCCAGCTTTTCGAATGTCTCGTTCCCTATAATGAAG
                      ____________________________________________________________
consensus             AGGTTGGACAGCGTGCCTATTGCTCCCAGCTTTTCGAATGTCTCGTTCCCTATAATGAAG
 
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JMSF033H01+           GGCATGGCTTTGATTCCTCGGTACTTGGGCGCCGGTTCTTCAATAACCGACGACTCATCA
JMFF040J06+           GGCATGGCTTTGATTCCTCGGTACTTGGGCGCCGGTTCTTCAATAACCGACGACTCATCA
JMSF032J19+           GGCATGGCTTTGATTCCTCGGTACTTGGGCGCCGGTTCTTCAATAACCGACGACTCATCA
                      ____________________________________________________________
consensus             GGCATGGCTTTGATTCCTCGGTACTTGGGCGCCGGTTCTTCAATAACCGACGACTCATCA
 
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JMSF033H01+           TGGCCGTTCATTACTGTTGTGGTTTTCTCCGCCTTCGCCGGAGATTCTCCTCCATGC   
JMFF040J06+           TGGCCGTTCATTACTGTTGTGGTTTTCTCCGCCTT                         
JMSF032J19+           TGGCCGTTCATTACTGTTGTGGTTTTCTCCGCCTTCGCCGGAGATTCTCCTCCATGCTTA
                      ____________________________________________________________
consensus             TGGCCGTTCATTACTGTTGTGGTTTTCTCCGCCTTCGCCGGAGATTCTCCTCCATGCTTA
 
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JMSF032J19+           TTATCCTCCATTTCCACTCCCATTTATGTCTTCACTCAATTTAATTTTTGTTTTCTTTTC
                      ____________________________________________________________
consensus             TTATCCTCCATTTCCACTCCCATTTATGTCTTCACTCAATTTAATTTTTGTTTTCTTTTC