| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF038B20 | Sequence | 558 | 002324 (3) | gb|KCW52672.1| | 4e-58 | hypothetical protein EUGRSUZ_J02045, partial [Eucalyptus grandis] | 518 | 002324 (3) | ref|XP_009799101.1| | 9e-29 | PREDICTED: uncharacterized protein C20orf24 homolog [Nicotiana sylvestris] |
| JMSF032E22 | Sequence | 705 | 002324 (3) | gb|KCW52672.1| | 2e-57 | hypothetical protein EUGRSUZ_J02045, partial [Eucalyptus grandis] | 148 | 016136 | gb|AFW74977.1| | 3e-04 | hypothetical protein ZEAMMB73_356648, partial [Zea mays] |
This contig is upended
. : . : . : . : . : . :
rJMFF038B20- ATGCTTGCCCATTGCAATTGTTAGGTTCAGAAGCAATGGCT
____________________________________________________________
consensus ATGCTTGCCCATTGCAATTGTTAGGTTCAGAAGCAATGGCT
. : . : . : . : . : . :
rJMFF038B20- TATCGATAGCAAGAAAAAAAAAAACAGCTAATGCTAGNGTTTTTAAACCAGNGCAAAAAT
____________________________________________________________
consensus TATCGATAGCAAGAAAAAAAAAAACAGCTAATGCTAGNGTTTTTAAACCAGNGCAAAAAT
. : . : . : . : . : . :
rJMFF038B20- AATATTGCACAAGTTGCGGNTAAACCAACATTATCAATTCTGGAACTTCCATGTCTGGAG
JMSF032E22+ TCTGGAG
____________________________________________________________
consensus AATATTGCACAAGTTGCGGNTAAACCAACATTATCAATTCTGGAACTTCCATGTCTGGAG
. : . : . : . : . : . :
rJMFF038B20- TGAAAAAATGGGTCATACNTCTCAACTAAAATAAACTTTAATCCTTATGCTAAAATAAAA
JMSF032E22+ TGAAAAAATGGGTCATACATCTCAACTAAAATAAACTTTAATCCTTATGCTAAAATAAGA
____________________________________________________________
consensus TGAAAAAATGGGTCATACATCTCAACTAAAATAAACTTTAATCCTTATGCTAAAATAAGA
. : . : . : . : . : . :
rJMFF038B20- AGCGACGGAAGGCAATATAAGTANANAAGTTTTTCTTCCTCGATGACGGAAGNGCATCAA
JMFF038B20+ CTCGATGACGGAAGTGCATCAA
JMSF032E22+ AGCGACGGAAGGCAATATAAGTAGAGAAGTTTTTCTTCCTCGATGACGGAAGTGCATCAA
____________________________________________________________
consensus AGCGACGGAAGGCAATATAAGTAGAGAAGTTTTTCTTCCTCGATGACGGAAGTGCATCAA
. : . : . : . : . : . :
rJMFF038B20- CAACATGGCTGGTCGGATCAAAAATGTAANAGGNTGTATACCANAGTCCAAACAAGCACA
JMFF038B20+ CAACATGGCTGGTCGGATCAGAAATGTAAGAGGCTGTATACCAGAGTCCAAACAAGCACA
JMSF032E22+ CAACATGGCTGGTCGGATCAGAAATGTAAGAGGCTGTATACCAGAGTCCAAACAAGCACA
____________________________________________________________
consensus CAACATGGCTGGTCGGATCAGAAATGTAAGAGGCTGTATACCAGAGTCCAAACAAGCACA
. : . : . : . : . : . :
rJMFF038B20- AANAGNGTTATGGAAGCGAAAAGCCCCTCTTGCAGGANAACTCCATGACCACCCAATTCT
JMFF038B20+ AAGAGTGTTATGGAAGCGAAAAGCCCCTCTTGCAGGAGAACTCCATGACCACCCAATTCT
JMSF032E22+ AAGAGTGTTATGGAAGCGAAAAGCCCCTCTTGCAGGAGAACTCCATGACCACCCAATTCT
____________________________________________________________
consensus AAGAGTGTTATGGAAGCGAAAAGCCCCTCTTGCAGGAGAACTCCATGACCACCCAATTCT
. : . : . : . : . : . :
rJMFF038B20- TCTTCATCAACTTTTAGTATCAGNGCATAATAACCATANATAACCCCGGAGGATATTGCA
JMFF038B20+ TCTTCATCAACTTTTAGTATCAGTGCATAATAACCATAGATAACCCCGGAGGATATTGCA
JMSF032E22+ TCTTCATCAACTTTTAGTATCAGTGCATAATAACCATAGATAACCCCGGAGGATATTGCA
____________________________________________________________
consensus TCTTCATCAACTTTTAGTATCAGTGCATAATAACCATAGATAACCCCGGAGGATATTGCA
. : . : . : . : . : . :
rJMFF038B20- ANAAACAACATAAACCANAATCCACCAATCAAAGGAATCGCTCCCCAAATCAACCCA
JMFF038B20+ AGAAACAACATAAACCAGAATCCACCAATCAAAGGAATCGCTCCCCAAATCAACCCACAT
JMSF032E22+ AGAAACAACATAAACCAGAATCCACCAATCAAAGGAATCGCTCCCCAAATCAACCCACAT
____________________________________________________________
consensus AGAAACAACATAAACCAGAATCCACCAATCAAAGGAATCGCTCCCCAAATCAACCCACAT
. : . : . : . : . : . :
JMFF038B20+ AGAAGAGCAGTAGCTTGTCTGGTCCAATGCAATACATCACCTAGTTGATCCTTGTCCCAA
JMSF032E22+ AGAAGAGCAGTAGCTTGTCTGGTCCAATGCAATACATCACCTAGTTGATCCTTGTCCCAA
____________________________________________________________
consensus AGAAGAGCAGTAGCTTGTCTGGTCCAATGCAATACATCACCTAGTTGATCCTTGTCCCAA
. : . : . : . : . : . :
JMFF038B20+ GAAGCATCAGGATCAAACAGTTTTGCAAATTTGAACGGAGACAAGTGACCATTGTGGTGG
JMSF032E22+ GAAGCATCAGGATCAAACAGTTTTGCAAATTTGAACGGAGACAAGTGACCATTGTGGTGG
____________________________________________________________
consensus GAAGCATCAGGATCAAACAGTTTTGCAAATTTGAACGGAGACAAGTGACCATTGTGGTGG
. : . : . : . : . : . :
JMFF038B20+ TGTTGCTGATTCTGATTCTGAAGATTAGCCTTGGCCGATTTTCGCTCTTTCATGGTGAAT
JMSF032E22+ TGTTGCTGATTCTGATTCTGAAGATTAGCCTTGGCCGATTTTCGCTCTTTCATGGTGAAT
____________________________________________________________
consensus TGTTGCTGATTCTGATTCTGAAGATTAGCCTTGGCCGATTTTCGCTCTTTCATGGTGAAT
. : . : . : . : . : . :
JMFF038B20+ TTCGACAGAAGCTTCCAAATTACTAGGGTTACCACAAATCCCAATCAACCGATCGGATCC
JMSF032E22+ TTCGACAGAAGCTTCCAAATTACTAGGGTTACCACAAATCCCAATCAACCGATCGGATCC
____________________________________________________________
consensus TTCGACAGAAGCTTCCAAATTACTAGGGTTACCACAAATCCCAATCAACCGATCGGATCC
. : . : . : . : . : . :
JMFF038B20+ GATTTAAAGGGTTAGGGTTTGAGTGAGGAAGACGATGATGCTAGGAAGGTTGAATT
JMSF032E22+ GATTTAAAGGGTTAGGGTTTGAGTGAGGAAGACGATGATGCTAGGAAGGTTGAATTGTGC
____________________________________________________________
consensus GATTTAAAGGGTTAGGGTTTGAGTGAGGAAGACGATGATGCTAGGAAGGTTGAATTGTGC