Contig 002323:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS098D04Sequence626002323 (5)dbj|BAO49699.1|2e-113nuclear pore complex protein Nup93a [Nicotiana benthamiana]
JMFS168A09Sequence578002323 (5)dbj|BAO49699.1|4e-107nuclear pore complex protein Nup93a [Nicotiana benthamiana]
JMSF008J13Sequence410002323 (5)dbj|BAO49700.1|2e-67nuclear pore complex protein Nup93b [Nicotiana benthamiana]766001290 (3)ref|XP_009796341.1|2e-43PREDICTED: uncharacterized protein At2g41620 isoform X1 [Nicotiana sylvestris]
JMSF019F17Sequence446002323 (5)dbj|BAO49700.1|3e-78nuclear pore complex protein Nup93b [Nicotiana benthamiana]733001290 (3)ref|XP_009796342.1|3e-87PREDICTED: uncharacterized protein At2g41620 isoform X2 [Nicotiana sylvestris]
JMSF032D18Sequence678002323 (5)dbj|BAO49699.1|6e-118nuclear pore complex protein Nup93a [Nicotiana benthamiana]818001290 (3)ref|XP_009796341.1|3e-81PREDICTED: uncharacterized protein At2g41620 isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF032D18+ CTTCCCTATAGGCATCAG
                      ____________________________________________________________
consensus CTTCCCTATAGGCATCAG
 
. : . : . : . : . : . :
JMFS098D04+ TATCAGCTAAAGGTACTAGCTCCATGCTAGACGGTCCAGA
JMFS168A09+ GA
JMSF032D18+ CTTTTTCTCAAGAATGGGCTTATCAGCTAAAGGTACTAGCTCCATGCTAGACGGTCCAGA
                      ____________________________________________________________
consensus CTTTTTCTCAAGAATGGGCTTATCAGCTAAAGGTACTAGCTCCATGCTAGACGGTCCAGA
 
. : . : . : . : . : . :
JMFS098D04+ AGACACCTGAGGACTGTAAGTCAAAGATGCTATTGGACGCTGGCGAGCACTCCCAGGACT
JMFS168A09+ AGACACCTGAGGACTGTAAGTCAAAGATGCTATTGGACGCTGGCGAGCACTCCCAGGACT
JMSF032D18+ AGACACCTGAGGACTGTAAGTCAAAGATGCTATTGGACGCTGGCGAGCACTCCCAGGACT
                      ____________________________________________________________
consensus AGACACCTGAGGACTGTAAGTCAAAGATGCTATTGGACGCTGGCGAGCACTCCCAGGACT
 
. : . : . : . : . : . :
JMFS098D04+ TGATTCACTGATATTTGCTCTAGGCAATGTTGAAATCCGACTCAGACTCTGAAGGAAGCT
JMFS168A09+ TGATTCACTGATATTTGCTCTAGGCAATGTTGAAATCCGACTCAGACTCTGAAGGAAGCT
JMSF032D18+ TGATTCACTGATATTTGCTCTAGGCAATGTTGAAATCCGACTCAGACTCTGAAGGAAGCT
                      ____________________________________________________________
consensus TGATTCACTGATATTTGCTCTAGGCAATGTTGAAATCCGACTCAGACTCTGAAGGAAGCT
 
. : . : . : . : . : . :
JMFS098D04+ TCTTTTTTCCTTCTGCCAATCCTCCTCCAAGACTGTCATCATGTAGTCATTGAAATTTTT
JMFS168A09+ TCTTTTTTCCTTCTGCCAATCCTCCTCCAAGACTGTCATCATGTAGTCATTGAAATTTTT
JMSF019F17+ TCCAAGACTGTCATCATGTAGTCATTGAAATTTTT
JMSF032D18+ TCTTTTTTCCTTCTGCCAATCCTCCTCCAAGACTGTCATCATGTAGTCATTGAAATTTTT
                      ____________________________________________________________
consensus TCTTTTTTCCTTCTGCCAATCCTCCTCCAAGACTGTCATCATGTAGTCATTGAAATTTTT
 
. : . : . : . : . : . :
JMFS098D04+ AAGGTTATCCTTCTGAGCTTCTTGTACAGCAGAGACCATTGCCATTTCATGGATCTGTTG
JMFS168A09+ AAGGTTATCCTTCTGAGCTTCTTGTACAGCAGAGACCATTGCCATTTCATGGATCTGTTG
JMSF019F17+ AAGGTTATCCTTCTGAGCTTCTTGTACAGCAGAGACCATTGCCATTTCATGGATCTGTTG
JMSF008J13+ TTCTGAGCTTCTTGTACAGCAGAGACCATTGCCATTTCATGGATCTGTTG
JMSF032D18+ AAGGTTATCCTTCTGAGCTTCTTGTACAGCAGAGACCATTGCCATTTCATGGATCTGTTG
                      ____________________________________________________________
consensus AAGGTTATCCTTCTGAGCTTCTTGTACAGCAGAGACCATTGCCATTTCATGGATCTGTTG
 
. : . : . : . : . : . :
JMFS098D04+ CAGATAATCTTCAACAGTAGTTGCCTCAGCAGGAAAAACATCTTCAAATGTTGTCTTCAA
JMFS168A09+ CAGATAATCTTCAACAGTAGTTGCCTCAGCAGGAAAAACATCTTCAAATGTTGTCTTCAA
JMSF019F17+ CAGATAATCTTCAACAGTAGTTGCCTCAGCAGGAAAAACATCTTCAAATGTTGTCTTCAA
JMSF008J13+ CAGATAATCTTCAACAGTAGTTGCCTCAGCAGGAAAAACATCTTCAAATGTTGTCTTCAA
JMSF032D18+ CAGATAATCTTCAACAGTAGTTGCCTCAGCAGGAAAAACATCTTCAAATGTTGTCTTCAA
                      ____________________________________________________________
consensus CAGATAATCTTCAACAGTAGTTGCCTCAGCAGGAAAAACATCTTCAAATGTTGTCTTCAA
 
. : . : . : . : . : . :
JMFS098D04+ CTCAAAAGATTTGAGATCATTAGCAAGCTGCTCAGCATTGATTCCCTCACGGGCCAGTAA
JMFS168A09+ CTCAAAAGATTTGAGATCATTAGCAAGCTGCTCAGCATTGATTCCCTCACGGGCCAGTAA
JMSF019F17+ CTCAAAAGATTTGAGATCATTAGCAAGCTGCTCAGCATTGATTCCCTCACGGGCCAGTAA
JMSF008J13+ CTCAAAAGATTTGAGATCATTAGCAAGCTGCTCAGCATTGATTCCCTCACGGGCCAGTAA
JMSF032D18+ CTCAAAAGATTTGAGATCATTAGCAAGCTGCTCAGCATTGATTCCCTCACGGGCCAGTAA
                      ____________________________________________________________
consensus CTCAAAAGATTTGAGATCATTAGCAAGCTGCTCAGCATTGATTCCCTCACGGGCCAGTAA
 
. : . : . : . : . : . :
JMFS098D04+ CCTTGTGGCTGCAATTGATTGAGAAGGAGCTTCCGCTCTTAGGGTTTTAGCCTTCAACTT
JMFS168A09+ CCTTGTGGCTGCAATTGATTGAGAAGGAGCTTCCGCTCTTAGGGTTTTAGCCTTCAACTT
JMSF019F17+ CCTTGTGGCTGCAATTGATTGAGAAGGAGCTTCCGCTCTTAGGGTTTTAGCCTTCAACTT
JMSF008J13+ CCTTGTGGCTGCAATTGATTGAGAAGGAGCTTCCGCTCTTAGGGTTTTAGCCTTCAACTT
JMSF032D18+ CCTTGTGGCTGCAATTGATTGAGAAGGAGCTTCCGCTCTTAGGGTTTTAGCCTTCAACTT
                      ____________________________________________________________
consensus CCTTGTGGCTGCAATTGATTGAGAAGGAGCTTCCGCTCTTAGGGTTTTAGCCTTCAACTT
 
. : . : . : . : . : . :
JMFS098D04+ TTTCGACAACGCTTCCAGCTGATCCAAATTCCTCTGAAGAGGAGGGAACTGAGCAGAAGG
JMFS168A09+ TTTCGACAACGCTTCCAGCTGATCCAAATTCCTCTGAAGAGGAGGGAACTGAGCAGAAGG
JMSF019F17+ TTTCGACAACGCTTCCAGCTGATCCAAATTCCTCTGAAGAGGAGGGAACTGAGCAGAAGG
JMSF008J13+ TTTCGACAACGCTTCCAGCTGATCCAAATTCCTCTGAAGAGGAGGGAACTGAGCAGAAGG
JMSF032D18+ TTTCGACAACGCTTCCAGCTGATCCAAATTCCTCTGAAGAGGAGGGAACTGAGCAGAAGG
                      ____________________________________________________________
consensus TTTCGACAACGCTTCCAGCTGATCCAAATTCCTCTGAAGAGGAGGGAACTGAGCAGAAGG
 
. : . : . : . : . : . :
JMFS098D04+ GGCGGTTTGTTCGAGAAGCTTAGAGGAAGAGTGTAGAAGTCCACTCCAGCCACTCATGTC
JMFS168A09+ GGCGGTTTGTTCGAGAAGCTTAGAGGAAGAGTGTAGAAGTCCACTCCAGCCACTCATGTC
JMSF019F17+ GGCGGTTTGTTCGAGAAGCTTAGAGGAAGAGTGTAGAAGTCCACTCCAGCCACTCATGTC
JMSF008J13+ GGCGGTTTGTTCGAGAAGCTTAGAGGAAGAGTGTAGAAGTCCACTCCAGCCACTCATGTC
JMSF032D18+ GGCGGTTTGTTCGAGAAGCTTAGAGGAAGAGTGTAGAAGTCCACTCCAGCCACTCATGTC
                      ____________________________________________________________
consensus GGCGGTTTGTTCGAGAAGCTTAGAGGAAGAGTGTAGAAGTCCACTCCAGCCACTCATGTC
 
. : . : . : . : . : . :
JMFS098D04+ TGTGTCGTTCGCCATTGTTTGCGCAGCTGAGCTTTGCTGATGCTAA
JMFS168A09+ TGTGTCGTTCGCCATTGTTTGCGCAGCTGAGCTTTG
JMSF019F17+ TGTGTCGTTCGCCATTGTTTGCGCAGCTGAGCTTTGCTGATGCTAA
JMSF008J13+ TGTGTCGTTCGCCATTGTTTGCGCAGCTGAGCTTTGCTGATGCTAAGTTCAAAGAGC
JMSF032D18+ TGTGTCGTTCGCCATTGTTTGCGCAGCTGAGCTTTGCTGATGCTAAGTTCAAAGAGCTCC
                      ____________________________________________________________
consensus TGTGTCGTTCGCCATTGTTTGCGCAGCTGAGCTTTGCTGATGCTAAGTTCAAAGAGCTCC