Contig 002323:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS098D04Sequence626002323 (5)dbj|BAO49699.1|2e-113nuclear pore complex protein Nup93a [Nicotiana benthamiana]
JMFS168A09Sequence578002323 (5)dbj|BAO49699.1|4e-107nuclear pore complex protein Nup93a [Nicotiana benthamiana]
JMSF008J13Sequence410002323 (5)dbj|BAO49700.1|2e-67nuclear pore complex protein Nup93b [Nicotiana benthamiana]766001290 (3)ref|XP_009796341.1|2e-43PREDICTED: uncharacterized protein At2g41620 isoform X1 [Nicotiana sylvestris]
JMSF019F17Sequence446002323 (5)dbj|BAO49700.1|3e-78nuclear pore complex protein Nup93b [Nicotiana benthamiana]733001290 (3)ref|XP_009796342.1|3e-87PREDICTED: uncharacterized protein At2g41620 isoform X2 [Nicotiana sylvestris]
JMSF032D18Sequence678002323 (5)dbj|BAO49699.1|6e-118nuclear pore complex protein Nup93a [Nicotiana benthamiana]818001290 (3)ref|XP_009796341.1|3e-81PREDICTED: uncharacterized protein At2g41620 isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF032D18+                                                     CTTCCCTATAGGCATCAG
                      ____________________________________________________________
consensus                                                       CTTCCCTATAGGCATCAG
 
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JMFS098D04+                               TATCAGCTAAAGGTACTAGCTCCATGCTAGACGGTCCAGA
JMFS168A09+                                                                     GA
JMSF032D18+           CTTTTTCTCAAGAATGGGCTTATCAGCTAAAGGTACTAGCTCCATGCTAGACGGTCCAGA
                      ____________________________________________________________
consensus             CTTTTTCTCAAGAATGGGCTTATCAGCTAAAGGTACTAGCTCCATGCTAGACGGTCCAGA
 
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JMFS098D04+           AGACACCTGAGGACTGTAAGTCAAAGATGCTATTGGACGCTGGCGAGCACTCCCAGGACT
JMFS168A09+           AGACACCTGAGGACTGTAAGTCAAAGATGCTATTGGACGCTGGCGAGCACTCCCAGGACT
JMSF032D18+           AGACACCTGAGGACTGTAAGTCAAAGATGCTATTGGACGCTGGCGAGCACTCCCAGGACT
                      ____________________________________________________________
consensus             AGACACCTGAGGACTGTAAGTCAAAGATGCTATTGGACGCTGGCGAGCACTCCCAGGACT
 
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JMFS098D04+           TGATTCACTGATATTTGCTCTAGGCAATGTTGAAATCCGACTCAGACTCTGAAGGAAGCT
JMFS168A09+           TGATTCACTGATATTTGCTCTAGGCAATGTTGAAATCCGACTCAGACTCTGAAGGAAGCT
JMSF032D18+           TGATTCACTGATATTTGCTCTAGGCAATGTTGAAATCCGACTCAGACTCTGAAGGAAGCT
                      ____________________________________________________________
consensus             TGATTCACTGATATTTGCTCTAGGCAATGTTGAAATCCGACTCAGACTCTGAAGGAAGCT
 
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JMFS098D04+           TCTTTTTTCCTTCTGCCAATCCTCCTCCAAGACTGTCATCATGTAGTCATTGAAATTTTT
JMFS168A09+           TCTTTTTTCCTTCTGCCAATCCTCCTCCAAGACTGTCATCATGTAGTCATTGAAATTTTT
JMSF019F17+                                    TCCAAGACTGTCATCATGTAGTCATTGAAATTTTT
JMSF032D18+           TCTTTTTTCCTTCTGCCAATCCTCCTCCAAGACTGTCATCATGTAGTCATTGAAATTTTT
                      ____________________________________________________________
consensus             TCTTTTTTCCTTCTGCCAATCCTCCTCCAAGACTGTCATCATGTAGTCATTGAAATTTTT
 
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JMFS098D04+           AAGGTTATCCTTCTGAGCTTCTTGTACAGCAGAGACCATTGCCATTTCATGGATCTGTTG
JMFS168A09+           AAGGTTATCCTTCTGAGCTTCTTGTACAGCAGAGACCATTGCCATTTCATGGATCTGTTG
JMSF019F17+           AAGGTTATCCTTCTGAGCTTCTTGTACAGCAGAGACCATTGCCATTTCATGGATCTGTTG
JMSF008J13+                     TTCTGAGCTTCTTGTACAGCAGAGACCATTGCCATTTCATGGATCTGTTG
JMSF032D18+           AAGGTTATCCTTCTGAGCTTCTTGTACAGCAGAGACCATTGCCATTTCATGGATCTGTTG
                      ____________________________________________________________
consensus             AAGGTTATCCTTCTGAGCTTCTTGTACAGCAGAGACCATTGCCATTTCATGGATCTGTTG
 
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JMFS098D04+           CAGATAATCTTCAACAGTAGTTGCCTCAGCAGGAAAAACATCTTCAAATGTTGTCTTCAA
JMFS168A09+           CAGATAATCTTCAACAGTAGTTGCCTCAGCAGGAAAAACATCTTCAAATGTTGTCTTCAA
JMSF019F17+           CAGATAATCTTCAACAGTAGTTGCCTCAGCAGGAAAAACATCTTCAAATGTTGTCTTCAA
JMSF008J13+           CAGATAATCTTCAACAGTAGTTGCCTCAGCAGGAAAAACATCTTCAAATGTTGTCTTCAA
JMSF032D18+           CAGATAATCTTCAACAGTAGTTGCCTCAGCAGGAAAAACATCTTCAAATGTTGTCTTCAA
                      ____________________________________________________________
consensus             CAGATAATCTTCAACAGTAGTTGCCTCAGCAGGAAAAACATCTTCAAATGTTGTCTTCAA
 
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JMFS098D04+           CTCAAAAGATTTGAGATCATTAGCAAGCTGCTCAGCATTGATTCCCTCACGGGCCAGTAA
JMFS168A09+           CTCAAAAGATTTGAGATCATTAGCAAGCTGCTCAGCATTGATTCCCTCACGGGCCAGTAA
JMSF019F17+           CTCAAAAGATTTGAGATCATTAGCAAGCTGCTCAGCATTGATTCCCTCACGGGCCAGTAA
JMSF008J13+           CTCAAAAGATTTGAGATCATTAGCAAGCTGCTCAGCATTGATTCCCTCACGGGCCAGTAA
JMSF032D18+           CTCAAAAGATTTGAGATCATTAGCAAGCTGCTCAGCATTGATTCCCTCACGGGCCAGTAA
                      ____________________________________________________________
consensus             CTCAAAAGATTTGAGATCATTAGCAAGCTGCTCAGCATTGATTCCCTCACGGGCCAGTAA
 
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JMFS098D04+           CCTTGTGGCTGCAATTGATTGAGAAGGAGCTTCCGCTCTTAGGGTTTTAGCCTTCAACTT
JMFS168A09+           CCTTGTGGCTGCAATTGATTGAGAAGGAGCTTCCGCTCTTAGGGTTTTAGCCTTCAACTT
JMSF019F17+           CCTTGTGGCTGCAATTGATTGAGAAGGAGCTTCCGCTCTTAGGGTTTTAGCCTTCAACTT
JMSF008J13+           CCTTGTGGCTGCAATTGATTGAGAAGGAGCTTCCGCTCTTAGGGTTTTAGCCTTCAACTT
JMSF032D18+           CCTTGTGGCTGCAATTGATTGAGAAGGAGCTTCCGCTCTTAGGGTTTTAGCCTTCAACTT
                      ____________________________________________________________
consensus             CCTTGTGGCTGCAATTGATTGAGAAGGAGCTTCCGCTCTTAGGGTTTTAGCCTTCAACTT
 
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JMFS098D04+           TTTCGACAACGCTTCCAGCTGATCCAAATTCCTCTGAAGAGGAGGGAACTGAGCAGAAGG
JMFS168A09+           TTTCGACAACGCTTCCAGCTGATCCAAATTCCTCTGAAGAGGAGGGAACTGAGCAGAAGG
JMSF019F17+           TTTCGACAACGCTTCCAGCTGATCCAAATTCCTCTGAAGAGGAGGGAACTGAGCAGAAGG
JMSF008J13+           TTTCGACAACGCTTCCAGCTGATCCAAATTCCTCTGAAGAGGAGGGAACTGAGCAGAAGG
JMSF032D18+           TTTCGACAACGCTTCCAGCTGATCCAAATTCCTCTGAAGAGGAGGGAACTGAGCAGAAGG
                      ____________________________________________________________
consensus             TTTCGACAACGCTTCCAGCTGATCCAAATTCCTCTGAAGAGGAGGGAACTGAGCAGAAGG
 
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JMFS098D04+           GGCGGTTTGTTCGAGAAGCTTAGAGGAAGAGTGTAGAAGTCCACTCCAGCCACTCATGTC
JMFS168A09+           GGCGGTTTGTTCGAGAAGCTTAGAGGAAGAGTGTAGAAGTCCACTCCAGCCACTCATGTC
JMSF019F17+           GGCGGTTTGTTCGAGAAGCTTAGAGGAAGAGTGTAGAAGTCCACTCCAGCCACTCATGTC
JMSF008J13+           GGCGGTTTGTTCGAGAAGCTTAGAGGAAGAGTGTAGAAGTCCACTCCAGCCACTCATGTC
JMSF032D18+           GGCGGTTTGTTCGAGAAGCTTAGAGGAAGAGTGTAGAAGTCCACTCCAGCCACTCATGTC
                      ____________________________________________________________
consensus             GGCGGTTTGTTCGAGAAGCTTAGAGGAAGAGTGTAGAAGTCCACTCCAGCCACTCATGTC
 
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JMFS098D04+           TGTGTCGTTCGCCATTGTTTGCGCAGCTGAGCTTTGCTGATGCTAA              
JMFS168A09+           TGTGTCGTTCGCCATTGTTTGCGCAGCTGAGCTTTG                        
JMSF019F17+           TGTGTCGTTCGCCATTGTTTGCGCAGCTGAGCTTTGCTGATGCTAA              
JMSF008J13+           TGTGTCGTTCGCCATTGTTTGCGCAGCTGAGCTTTGCTGATGCTAAGTTCAAAGAGC   
JMSF032D18+           TGTGTCGTTCGCCATTGTTTGCGCAGCTGAGCTTTGCTGATGCTAAGTTCAAAGAGCTCC
                      ____________________________________________________________
consensus             TGTGTCGTTCGCCATTGTTTGCGCAGCTGAGCTTTGCTGATGCTAAGTTCAAAGAGCTCC