Contig 002318:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF031O21Sequence639002318 (4)gb|KJB62146.1|7e-45hypothetical protein B456_009G402800 [Gossypium raimondii]749011450 (3)ref|XP_009782283.1|7e-73PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Nicotiana syl
JMSF034F02Sequence692002318 (4)ref|XP_009782283.1|5e-54PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Nicotiana syl417006108 (140)gb|ABP35528.1|8e-52cyclophilin [Ipomoea batatas]
JMSF047H04Sequence659002318 (4)ref|XP_009782283.1|4e-77PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Nicotiana syl726011450 (3)ref|XP_009782283.1|2e-69PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Nicotiana syl
JMSF053C19Sequence672002318 (4)ref|XP_009782283.1|2e-76PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Nicotiana syl898011450 (3)ref|XP_009782283.1|1e-102PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Nicotiana syl

Alignment

This contig is upended


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JMSF047H04+                                                      CGTCTTCCACGATTGTC
JMSF053C19+                                                           TCCACGATTGTC
                      ____________________________________________________________
consensus                                                        CGTCTTCCACGATTGTC
 
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JMSF047H04+           TTCATCACTTCTACTTGAGAGAACAGCAATGATTGCAGTATAAACAATAACTATTGAAGC
JMSF053C19+           TTCATCACTTCTACTTGAGAGAACAGCAATGATTGCAGTATAAACAATAACTATTGAAGC
                      ____________________________________________________________
consensus             TTCATCACTTCTACTTGAGAGAACAGCAATGATTGCAGTATAAACAATAACTATTGAAGC
 
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JMSF047H04+           AATCAGTGCTGTTCCAAAGGAAACCCTAATTAGATATTCAGATGCCATCTTTGCTTTCTC
JMSF053C19+           AATCAGTGCTGTTCCAAAGGAAACCCTAATTAGATATTCAGATGCCATCTTTGCTTTCTC
JMSF034F02+                                      AATTAGATATTCAGATGCCATCTTTGCTTTCTC
                      ____________________________________________________________
consensus             AATCAGTGCTGTTCCAAAGGAAACCCTAATTAGATATTCAGATGCCATCTTTGCTTTCTC
 
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JMSF047H04+           TAGCAGTGGTTCAATCTTCATCTTAAACGATTTAGCAGAAAGATTTGTGCGGTAACTCTT
JMSF053C19+           TAGCAGTGGTTCAATCTTCATCTTAAACGATTTAGCAGAAAGATTTGTGCGGTAACTCTT
JMSF034F02+           TAGCAGTGGTTCAATCTTCATCTTAAACGATTTAGCAGAAAGATTTGTGCGGTAACTCTT
JMSF031O21+                                CTTAAACGATTTAGCAGAAAGATTTGTGCGGTAACTCTT
                      ____________________________________________________________
consensus             TAGCAGTGGTTCAATCTTCATCTTAAACGATTTAGCAGAAAGATTTGTGCGGTAACTCTT
 
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JMSF047H04+           AGGAAACACATAGAGGACATCGCCTTCATCTGACACCTCCAGGAAGCCATTAGTATCCGT
JMSF053C19+           AGGAAACACATAGAGGACATCGCCTTCATCTGACACCTCCAGGAAGCCATTAGTATCCGT
JMSF034F02+           AGGAAACACATAGAGGACATCGCCTTCATCTGACACCTCCAGGAAGCCATTAGTATCCGT
JMSF031O21+           AGGAAACACATAGAGGACATCGCCTTCATCTGACACCTCCAGGAAGCCATTAGTATCCGT
                      ____________________________________________________________
consensus             AGGAAACACATAGAGGACATCGCCTTCATCTGACACCTCCAGGAAGCCATTAGTATCCGT
 
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JMSF047H04+           TGCAAGAGCTTGCAAAGCCTTTTGGGCCTCATTCAACTGAAGCCCAGCCTTACTGGCGAC
JMSF053C19+           TGCAAGAGCTTGCAAAGCCTTTTGGGCCTCATTCAACTGAAGCCCAGCCTTACTGGCGAC
JMSF034F02+           TGCAAGAGCTTGCAAAGCCTTTTGGGCCTCATTCAACTGAAGCCCAGCCTTACTGGCGAC
JMSF031O21+           TGCAAGAGCTTGCAAAGCCTTTTGGGCCTCATTCAACTGAAGCCCAGCCTTACTGGCGAC
                      ____________________________________________________________
consensus             TGCAAGAGCTTGCAAAGCCTTTTGGGCCTCATTCAACTGAAGCCCAGCCTTACTGGCGAC
 
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JMSF047H04+           ATCCCCAACAGTGACTCTACCTCCAAGAGAATCAATGGCGTCCATCGCACGCTTCCGAAT
JMSF053C19+           ATCCCCAACAGTGACTCTACCTCCAAGAGAATCAATGGCGTCCATCGCACGCTTCCGAAT
JMSF034F02+           ATCCCCAACAGTGACTCTACCTCCAAGAGAATCAATGGCGTCCATCGCACGCTTCCGAAT
JMSF031O21+           ATCCCCAACAGTGACTCTACCTCCAAGAGAATCAATGGCGTCCATCGCACGCTTCCGAAT
                      ____________________________________________________________
consensus             ATCCCCAACAGTGACTCTACCTCCAAGAGAATCAATGGCGTCCATCGCACGCTTCCGAAT
 
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JMSF047H04+           GTCAGAGGGCAACTTATCGCTCTCCACGGCGGCTCCGGGCTTGATATCAGAGGTGGTCGC
JMSF053C19+           GTCAGAGGGCAACTTATCGCTCTCCACGGCGGCTCCGGGCTTGATATCAGAGGTGGTCGC
JMSF034F02+           GTCAGAGGGCAACTTATCGCTCTCCACGGCGGCTCCGGGCTTGATATCAGAGGTGGTCGC
JMSF031O21+           GTCAGAGGGCAACTTATCGCTCTCCACGGCGGCTCCGGGCTTGATATCAGAGGTGGTCGC
                      ____________________________________________________________
consensus             GTCAGAGGGCAACTTATCGCTCTCCACGGCGGCTCCGGGCTTGATATCAGAGGTGGTCGC
 
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JMSF047H04+           GACATCGACGCTGGCCCGTATTTGCAGAAACGGGGCCTTAATGGGGCGGAATTTGTAATT
JMSF053C19+           GACATCGACGCTGGCCCGTATTTGCAGAAACGGGGCCTTAATGGGGCGGAATTTGTAATT
JMSF034F02+           GACATCGACGCTGGCCCGTATTTGCAGAAACGGGGCCTTAATGGGGCGGAATTTGTAATT
JMSF031O21+           GACATCGACGCTGGCCCGTATTTGCAGAAACGGGGCCTTAATGGGGCGGAATTTGTAATT
                      ____________________________________________________________
consensus             GACATCGACGCTGGCCCGTATTTGCAGAAACGGGGCCTTAATGGGGCGGAATTTGTAATT
 
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JMSF047H04+           GAGATTCCTGGCGAAGTAACTGAGACTGGACTGCTGGGGTTTGAGAAGGGAGGGAGAGGG
JMSF053C19+           GAGATTCCTGGCGAAGTAACTGAGACTGGACTGCTGGGGTTTGAGAAGGGAGGGAGAGGG
JMSF034F02+           GAGATTCCTGGCGAAGTAACTGAGACTGGACTGCTGGGGTTTGAGAAGGGAGGGAGAGGG
JMSF031O21+           GAGATTCCTGGCGAAGTAACTGAGACTGGACTGCTGGGGTTTGAGAAGGGAGGGAGAGGG
                      ____________________________________________________________
consensus             GAGATTCCTGGCGAAGTAACTGAGACTGGACTGCTGGGGTTTGAGAAGGGAGGGAGAGGG
 
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JMSF047H04+           TTTTGGGGCGAGGAAACAGGAGTGCGAGTGGGAAGTCGTGGTTAGGAAGTAGAGTGAGGA
JMSF053C19+           TTTTGGGGCGAGGAAACAGGAGTGCGAGTGGGAAGTCGTGGTTAGGAAGTAGAGTGAGGA
JMSF034F02+           TTTTGGGGCGAGGAAACAGGAGTGCGAGTGGGAAGTCGTGGTTAGGAAGTAGAGTGAGGA
JMSF031O21+           TTTTGGGGCGAGGAAACAGGAGTGCGAGTGGGAAGTCGTGGTTAGGAAGTAGAGTGAGGA
                      ____________________________________________________________
consensus             TTTTGGGGCGAGGAAACAGGAGTGCGAGTGGGAAGTCGTGGTTAGGAAGTAGAGTGAGGA
 
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JMSF047H04+           TATGGAGCTCATTCTGAAGACTTTGAGGGCTTTTAAGC                      
JMSF053C19+           TATGGAGCTCATTCTGAAGACTTTGAGGGCTTTTAAGCTCCCGTTTAGGATTTAGCCAT 
JMSF034F02+           TATGGAGCTCATTCTGAAGACTTTGAGGGCTTTTAAGCTCCCGTTTAGGATTTAGCCATG
JMSF031O21+           TATGGAGCTCATTCTGAAGACTTTGAGGGCTTTTAAGCTCCCGTTTAGGATTTAGCCATG
                      ____________________________________________________________
consensus             TATGGAGCTCATTCTGAAGACTTTGAGGGCTTTTAAGCTCCCGTTTAGGATTTAGCCATG
 
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JMSF034F02+           GAAGAAGAATGAAGGTTTTCTGGATTCGAAGAAATGTTTGCTTGGTGAGGAAGACGCCGC
JMSF031O21+           GAAGAAGAATGAAGGTTTTCTGGATTCGAAGAAATGTTTGCTTGGTGAGGAAGACGCCGC
                      ____________________________________________________________
consensus             GAAGAAGAATGAAGGTTTTCTGGATTCGAAGAAATGTTTGCTTGGTGAGGAAGACGCCGC
 
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JMSF034F02+           GGTGTCACGACTGGGAATAGTATCAGCTCGCGAGCCAATGGTGTTTGGATTGATTCC   
JMSF031O21+           GGTGTCACGACTGGGAATAGTATCAGCTCGCGAGCCAATGGTGTTTGGATTGATTCCTCC
                      ____________________________________________________________
consensus             GGTGTCACGACTGGGAATAGTATCAGCTCGCGAGCCAATGGTGTTTGGATTGATTCCTCC