Contig 002310:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047P14Sequence587002310 (3)ref|XP_006344996.1|2e-57PREDICTED: anaphase-promoting complex subunit 8-like [Solanum tuberosum]
JMSF030L06Sequence633002310 (3)ref|XP_006344996.1|2e-67PREDICTED: anaphase-promoting complex subunit 8-like [Solanum tuberosum]746012661 (2)gb|EYU42516.1|1e-92hypothetical protein MIMGU_mgv1a003537mg [Erythranthe guttata]
JMSF034J20Sequence702002310 (3)ref|XP_006344996.1|2e-119PREDICTED: anaphase-promoting complex subunit 8-like [Solanum tuberosum]626012661 (2)gb|EYU42516.1|2e-65hypothetical protein MIMGU_mgv1a003537mg [Erythranthe guttata]

Alignment

This contig is upended


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JMSF034J20+                                                                TTCATCC
                      ____________________________________________________________
consensus                                                                  TTCATCC
 
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JMSF034J20+           AGTGATTAGTAAGGTTAAGGTTATTTAGTGTCTCTATTCTGGTGCACAAGGATTGAAGCT
                      ____________________________________________________________
consensus             AGTGATTAGTAAGGTTAAGGTTATTTAGTGTCTCTATTCTGGTGCACAAGGATTGAAGCT
 
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JMSF034J20+           CAGACCATGCACTCCAGTTCCATGGAAAGCTGCTCACAGACTCCACAAGTACTGTCCTAG
                      ____________________________________________________________
consensus             CAGACCATGCACTCCAGTTCCATGGAAAGCTGCTCACAGACTCCACAAGTACTGTCCTAG
 
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JMSF034J20+           CAAGACTGTCATTGCCTTTTTGCTTAAGAACAAGACCATACAGGTAAAGACAAAAGGAGT
                      ____________________________________________________________
consensus             CAAGACTGTCATTGCCTTTTTGCTTAAGAACAAGACCATACAGGTAAAGACAAAAGGAGT
 
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JMSF034J20+           CAATTGTTCCACTTTTGAGAAGTGCTGACAACTCCCTCTCAAGAGAAACCAGTTCTTGGT
                      ____________________________________________________________
consensus             CAATTGTTCCACTTTTGAGAAGTGCTGACAACTCCCTCTCAAGAGAAACCAGTTCTTGGT
 
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JMSF034J20+           TCACAGCATCACTTCTGCCTAAAGATCCTTCAAGTTCTATTGTTTCTTCTTCTTTACGCT
JMSF030L06+                                      CTTCAAGTTCTATTGTTTCTTCTTCTTTACGCT
                      ____________________________________________________________
consensus             TCACAGCATCACTTCTGCCTAAAGATCCTTCAAGTTCTATTGTTTCTTCTTCTTTACGCT
 
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JMSF034J20+           TCTCACCCGCCAAGTAAAGGGAGTAGTAGCATAAGAACTTGGCTTTCTTGCTCGTCTGAT
JMSF030L06+           TCTCACCCGCCAAGTAAAGGGAGTAGTAGCATAAGAACTTGGCTTTCTTGCTCGTCTGAT
                      ____________________________________________________________
consensus             TCTCACCCGCCAAGTAAAGGGAGTAGTAGCATAAGAACTTGGCTTTCTTGCTCGTCTGAT
 
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JMSF034J20+           CCCTGAGCACATGTGCAGCTCTCCGGTACTCCCGGCAATCGAAGTACGACTTTGCGAGCA
JMSF030L06+           CCCTGAGCACATGTGCAGCTCTCCGGTACTCCCGGCAATCGAAGTACGACTTTGCGAGCA
                      ____________________________________________________________
consensus             CCCTGAGCACATGTGCAGCTCTCCGGTACTCCCGGCAATCGAAGTACGACTTTGCGAGCA
 
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JMSF034J20+           AATAAAAGTCGCTATCAACTGCGTCGTACTCATCTTCCAGCAATGATTGGCTGGCAACAT
JMSF030L06+           AATAAAAGTCGCTATCAACTGCGTCGTACTCATCTTCCAGCAATGATTGGCTGGCAACAT
                      ____________________________________________________________
consensus             AATAAAAGTCGCTATCAACTGCGTCGTACTCATCTTCCAGCAATGATTGGCTGGCAACAT
 
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JMSF034J20+           AGGACACACCGGCGGTAGGCGTGGAAGTGAAAGCTGACTCGGGAGTCGCGGTGCGGAAGC
JMFF047P14+                                                          GCGGTGCGGAAGC
JMSF030L06+           AGGACACACCGGCGGTAGGCGTGGAAGTGAAAGCTGACTCGGGAGTCGCGGTGCGGAAGC
                      ____________________________________________________________
consensus             AGGACACACCGGCGGTAGGCGTGGAAGTGAAAGCTGACTCGGGAGTCGCGGTGCGGAAGC
 
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JMSF034J20+           GGCGGCGAATGCTCGAGCTTCCACGCTGGAATCGGGTGTGGGATGAGGAGTACTTTGACG
JMFF047P14+           GGCGGAGAATGCTGGAACTGCCGCGCTGGAACCGGGTGAGAGATGTGGGGTACTTTGTCG
JMSF030L06+           GGCGGCGAATGCTCGAGCTTCCACGCTGGAATCGGGTGTGGGATGAGGAGTACTTTGACG
                      ____________________________________________________________
consensus             GGCGGCGAATGCTCGAGCTTCCACGCTGGAATCGGGTGTGGGATGAGGAGTACTTTGACG
 
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JMSF034J20+           GGTCTTGCTCGATCCCAACTAGCTGCTCCGCTGCCCATTTGGCGGCGGAGTACAGGCAGC
JMFF047P14+           TGTCTTGCTCAATTCCCATTAGCTGCTCCGCTGCCCATTTGGAGGCGGAGTAGAGGCAGC
JMSF030L06+           GGTCTTGCTCGATCCCAACTAGCTGCTCCGCTGCCCATTTGGCGGCGGAGTACAGGCAGC
                      ____________________________________________________________
consensus             GGTCTTGCTCGATCCCAACTAGCTGCTCCGCTGCCCATTTGGCGGCGGAGTACAGGCAGC
 
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JMSF034J20+           GGTCGTTGAGCTGACGGAT                                         
JMFF047P14+           GATCGCTAAGCTGACGGAT                                         
JMSF030L06+           GGTCGTTGAGCTGACGGATTGCGGCGCGGAGCTCATTTCTGTAGTTCTCTTTGGATCCCA
                      ____________________________________________________________
consensus             GGTCGTTGAGCTGACGGATTGCGGCGCGGAGCTCATTTCTGTAGTTCTCTTTGGATCCCA
 
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JMSF030L06+           TTTAAATTTGTGGATACTTTACTCTTCACGGGATAATCACTTGTGTACAACTGAGAAGCA
                      ____________________________________________________________
consensus             TTTAAATTTGTGGATACTTTACTCTTCACGGGATAATCACTTGTGTACAACTGAGAAGCA
 
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JMSF030L06+           TATGTAAGCGAGTGTTATTTGCAAATGGAAATTAATTACACAATGGCTATTAATAGTCTA
                      ____________________________________________________________
consensus             TATGTAAGCGAGTGTTATTTGCAAATGGAAATTAATTACACAATGGCTATTAATAGTCTA
 
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JMSF030L06+           TGGAACGGTGGTGCAGATTCCGGTGATTTCACCGGCGACCGAGTTCGGAGCTTTTCAACC
                      ____________________________________________________________
consensus             TGGAACGGTGGTGCAGATTCCGGTGATTTCACCGGCGACCGAGTTCGGAGCTTTTCAACC