Contig 002309:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041P02Sequence640002309 (5)ref|XP_009796803.1|7e-105PREDICTED: elongator complex protein 2 [Nicotiana sylvestris]616005493 (3)ref|XP_002526286.1|1e-71nucleotide binding protein, putative [Ricinus communis] gb|EEF36075.1| nucleotid
JMFS042E06Sequence610002309 (5)ref|XP_009796803.1|8e-103PREDICTED: elongator complex protein 2 [Nicotiana sylvestris]
JMFS138B09Sequence624002309 (5)ref|XP_009796803.1|4e-98PREDICTED: elongator complex protein 2 [Nicotiana sylvestris]
JMSF030H18Sequence668002309 (5)ref|XP_009796803.1|5e-103PREDICTED: elongator complex protein 2 [Nicotiana sylvestris]770005493 (3)ref|XP_002526286.1|1e-96nucleotide binding protein, putative [Ricinus communis] gb|EEF36075.1| nucleotid
JMSF031H14Sequence654002309 (5)ref|XP_009796803.1|2e-93PREDICTED: elongator complex protein 2 [Nicotiana sylvestris]747005493 (3)ref|XP_002526286.1|7e-98nucleotide binding protein, putative [Ricinus communis] gb|EEF36075.1| nucleotid

Alignment

This contig is upended


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JMFF041P02+                                                 TATAGATGAATTNTGCTGTCCA
JMFS042E06+                                                                   TCCA
JMSF030H18+                                                                   TCCA
                      ____________________________________________________________
consensus                                                   TATAGATGAATTNTGCTGTCCA
 
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JMFF041P02+           ATCCTCCCATGGCCAGTACCAGGTGTTGGCTCCCAGGCAACTCTGCTAGTGAGAGAGAAA
JMFS138B09+                   ATGGCCAGTACCAGGTGTGGGCTCCCAGGCAACTCTGCTAGTGAGAGAGAAA
JMSF031H14+                                                         TAGTGAGAGAGAAA
JMFS042E06+           ATCCTCCCATGGCCAGTACCAGGTGTTGGCTCCCAGGCAACTCTGCTAGTGAGAGAGAAA
JMSF030H18+           ATCCTCCCATGGCCAGTACCAGGTGTTGGCTCCCAGGCAACTCTGCTAGTGAGAGAGAAA
                      ____________________________________________________________
consensus             ATCCTCCCATGGCCAGTACCAGGTGTTGGCTCCCAGGCAACTCTGCTAGTGAGAGAGAAA
 
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JMFF041P02+           CCATAGGTTTCCGACCAACAAAGAGAGAATCCAAGCATGATAATTTACAGTCACCTCCGT
JMFS138B09+           CCATAGGTTTCCGACCAACAAAGAGAGAATCCAAGCATGATAATTTACAGTCACCTCCGT
JMSF031H14+           CCATAGGTTTCCGACCANCAAAGAGAGAATCCAAGCATGATAATTTACAGTCACCTCNGT
JMFS042E06+           CCATAGGTTTCCGACCAACAAAGAGAGAATCCAAGCATGATAATTTACAGTCACCTCCGT
JMSF030H18+           CCATAGGTTTCCGACCAACAAAGAGAGAATCCAAGCATGATAATTTACAGTCACCTCCGT
                      ____________________________________________________________
consensus             CCATAGGTTTCCGACCAACAAAGAGAGAATCCAAGCATGATAATTTACAGTCACCTCCGT
 
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JMFF041P02+           ATGTAGATGGAAGGGCCAGGTCCCACACATTTACAGTACCATCCGAAGATGTGGATGCAA
JMFS138B09+           ATGTAGATGGAAGGGCCAGGTCCCACACATTTACAGTACCATCCGAAGATGTGGATGCAA
JMSF031H14+           ATGTAGATGGAAGGGCCAGGTCCCACACATTTACAGTACCATCNGAAGATGTGGATGCAA
JMFS042E06+           ATGTAGATGGAAGGGCCAGGTCCCACACATTTACAGTACCATCCGAAGATGTGGATGCAA
JMSF030H18+           ATGTAGATGGAAGGGCCAGGTCCCACACATTTACAGTACCATCCGAAGATGTGGATGCAA
                      ____________________________________________________________
consensus             ATGTAGATGGAAGGGCCAGGTCCCACACATTTACAGTACCATCCGAAGATGTGGATGCAA
 
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JMFF041P02+           AAATTGACTGTTGATGAGAAACCAATACTGCAGTAATGCATGTAACACCTTTTTTGTGGG
JMFS138B09+           AAATTGACTGTTGATGAGAAACCAATACTGCAGTAATGCATGTAACACCTTTTTTGTGGG
JMSF031H14+           AAATTGACTGTTGATGAGAAACCAATACTGCAGTAATGCATGTAACACCTTTTTTGTGGG
JMFS042E06+           AAATTGACTGTTGATGAGAAACCAATACTGCAGTAATGCATGTAACACCTTTTTTGTGGG
JMSF030H18+           AAATTGACTGTTGATGAGAAACCAATACTGCAGTAATGCATGTAACACCTTTTTTGTGGG
                      ____________________________________________________________
consensus             AAATTGACTGTTGATGAGAAACCAATACTGCAGTAATGCATGTAACACCTTTTTTGTGGG
 
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JMFF041P02+           ATTGTGGCAATTGTAACACATACCTCCACTTCTTCTCTGAAAGAGAAAATTCCCACAAAA
JMFS138B09+           ATTGTGGCAATTGTAACACATACCTCCACTTCTTCTCTGAAAGAGAAAATTCCCACAAAA
JMSF031H14+           ATTGTGGCAATTGTAACACATACCTCCACTTCTTCTCTGAAAGAGAAAATTCCCACAAAA
JMFS042E06+           ATTGTGGCAATTGTAACACATACCTCCACTTCTTCTCTGAAAGAGAAAATTCCCACAAAA
JMSF030H18+           ATTGTGGCAATTGTAACACATACCTCCACTTCTTCTCTGAAAGAGAAAATTCCCACAAAA
                      ____________________________________________________________
consensus             ATTGTGGCAATTGTAACACATACCTCCACTTCTTCTCTGAAAGAGAAAATTCCCACAAAA
 
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JMFF041P02+           TAATAACACCATCAGCATCTCCAGATAGCAAAAAGTGTTGCCCCAACTGCTTAGCTTTGA
JMFS138B09+           TAATAACACCATCAGCATCTCCAGATAGCAAAAAGTGTTGCCCCAACTGCTTAGCTTTGA
JMSF031H14+           TAATAACACCATCAGCATCTCCAGATAGCAAAAAGTGTTGCCCCAACTGCTTAGCTTTGA
JMFS042E06+           TAATAACACCATCAGCATCTCCAGATAGCAAAAAGTGTTGCCCCAACTGCTTAGCTTTGA
JMSF030H18+           TAATAACACCATCAGCATCTCCAGATAGCAAAAAGTGTTGCCCCAACTGCTTAGCTTTGA
                      ____________________________________________________________
consensus             TAATAACACCATCAGCATCTCCAGATAGCAAAAAGTGTTGCCCCAACTGCTTAGCTTTGA
 
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JMFF041P02+           AAGCAAACTTGCTGCTGGGAACCCAATGGGTACAGTTTACAGAGGCCTTGCGACCCGGAA
JMFS138B09+           AAGCAAACTTGCTGCTGGGAACCCAATGGGTACAGTTTACAGAGGCCTTGTGACCCGGAA
JMSF031H14+           AAGCAAACTTGCTGCTGGGAACCCAATGGGTACAGTTTACAGAGGCCTTGTGACCCGGAA
JMFS042E06+           AAGCAAACTTGCTGCTGGGAACCCAATGGGTACAGTTTACAGAGGCCTTGTGACCCGGAA
JMSF030H18+           AAGCAAACTTGCTGCTGGGAACCCAATGGGTACAGTTTACAGAGGCCTTGTGACCCGGAA
                      ____________________________________________________________
consensus             AAGCAAACTTGCTGCTGGGAACCCAATGGGTACAGTTTACAGAGGCCTTGTGACCCGGAA
 
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JMFF041P02+           GCGTAGTTAATATCTGTGCGGTCTTGGGGCAGAAAATAGCGACGGCGTTTTGGGCACCAA
JMFS138B09+           GCGTAGTTAATATCTGTGCGGTCTTGGGGCAGAAAATAGCGACGGCGTTTTGGGCACCAA
JMSF031H14+           GCGTAGTTAATATCTGTGCGGTCTTGGGGCAGAAAATAGCGACGGCGTTTTGGGCACCAA
JMFS042E06+           GCGTAGTTAATATCTGTGCGGTCTTGGGGCAGAAAATAGCGACGGCGTTTTGGGCACCAA
JMSF030H18+           GCGTAGTTAATATCTGTGCGGTCTTGGGGCAGAAAATAGCGACGGCGTTTTGGGCACCAA
                      ____________________________________________________________
consensus             GCGTAGTTAATATCTGTGCGGTCTTGGGGCAGAAAATAGCGACGGCGTTTTGGGCACCAA
 
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JMFF041P02+           AAGAGACTAAACCGGAGGCGCCCCAAGAAACGTTGTTCACTATTCTGTTGCAGCCAGCTC
JMFS138B09+           AAGAGACTAAACCGGAGGCGCCCCAAGAAACGTTGTTCACTATTCTGTTGCAGCCAGCTC
JMSF031H14+           AAGAGACTAAACCGGAGGCGCCCCAAGAAACGTTGTTCACTATTCTGTTGCAGCCAGCTC
JMFS042E06+           AAGAGACTAAACCGGAGGCGCCCCAAGAAACGTTGTTCACTATTCTGTTGCAGCCAGCTC
JMSF030H18+           AAGAGACTAAACCGGAGGCGCCCCAAGAAACGTTGTTCACTATTCTGTTGCAGCCAGCTC
                      ____________________________________________________________
consensus             AAGAGACTAAACCGGAGGCGCCCCAAGAAACGTTGTTCACTATTCTGTTGCAGCCAGCTC
 
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JMFF041P02+           CGATGAACACTCTCTCCACTCCCGCTTGTATACCGCCGCCGGACGCCATTCCACTTCTCT
JMFS138B09+           CGATGAACACTCTCTCCACTCCCGCTTGTATACCGCCGCCGGACGCCATTCCACTTCTCT
JMSF031H14+           CGATGAACACTCTCTCCACTCCCGCTTGTATACCGCCGCCGGACGCCATTCCACTTCTCT
JMFS042E06+           CGATGAACACTCTCTCCACTCCCGCTTG-ATACCGCCGCCGGACGCCATTCCACTTCTCT
JMSF030H18+           CGATGAACACTCTCTCCACTCCCGCTTGTATACCGCCGCCGGACGCCATTCCACTTCTCT
                      ____________________________________________________________
consensus             CGATGAACACTCTCTCCACTCCCGCTTGTATACCGCCGCCGGACGCCATTCCACTTCTCT
 
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JMFF041P02+           CTCTAACAGAGAAACTTT                                          
JMFS138B09+           CTCTAACAGAGAAACTTTAAGCGGAGGCCGGA                            
JMSF031H14+           CTCTAACAGAGAAACTTTAAGCGGAGGCCGGAGGGAACTGCCGAATGAGGAGGAAAGGCC
JMFS042E06+           CTC                                                         
JMSF030H18+           CTCTAACAGAGAAACTTTAAGCGGAGGCCGGAGGGAACTGCCGAATGAGGAGGAAAGGCC
                      ____________________________________________________________
consensus             CTCTAACAGAGAAACTTTAAGCGGAGGCCGGAGGGAACTGCCGAATGAGGAGGAAAGGCC