Contig 002304:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN015D21Sequence438002304 (2)emb|CDY35668.1|1e-35BnaC02g09340D [Brassica napus]
JMSF029O18Sequence659002304 (2)ref|XP_002529987.1|8e-80conserved hypothetical protein [Ricinus communis] gb|EEF32392.1| conserved hypot529019348ref|XP_009611852.1|2e-37PREDICTED: GPI mannosyltransferase 1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF029O18+            AAATCCATACCAAAGTGCAGCTTGTATAAGACAATCATTCATGAGACAGACAATGATCC
                      ____________________________________________________________
consensus              AAATCCATACCAAAGTGCAGCTTGTATAAGACAATCATTCATGAGACAGACAATGATCC
 
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JMSF029O18+           AAAGAACCATAGCACAAACAATGGGCTCACAGTTTCCACGAGTTCCAATGGTAAAGGTAA
                      ____________________________________________________________
consensus             AAAGAACCATAGCACAAACAATGGGCTCACAGTTTCCACGAGTTCCAATGGTAAAGGTAA
 
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JMSF029O18+           ATGGATTGAAAAGCCATACAATTACTGAATAGGTACTCAATTTCTCCGGCACCCCTCTTA
                      ____________________________________________________________
consensus             ATGGATTGAAAAGCCATACAATTACTGAATAGGTACTCAATTTCTCCGGCACCCCTCTTA
 
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JMFN015D21+                                                  CTGAAGCGGAAAAGAGGAATT
JMSF029O18+           GCTTCAAGATTTTGTGTATCAGAAACCCCACCAGCAGATCTGAAGCGGAAAAGAGGAATT
                      ____________________________________________________________
consensus             GCTTCAAGATTTTGTGTATCAGAAACCCCACCAGCAGATCTGAAGCGGAAAAGAGGAATT
 
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JMFN015D21+           TCCCCCAAGAAGGGTGAAGGAATGAATTGGGGATGAGGAGGAAAGCAATTAAGGGTGAGT
JMSF029O18+           TCCCCCAAGAAGGGTGAAGGAATGAATTGGGGATGAGGAGGAAAGCAATTAAGGGTGAGT
                      ____________________________________________________________
consensus             TCCCCCAAGAAGGGTGAAGGAATGAATTGGGGATGAGGAGGAAAGCAATTAAGGGTGAGT
 
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JMFN015D21+           AGCGATAGGTGGATCTTTTGTACGGGGAATCCCCTTTGGCCATCAAGGCAGCGGCGTCGG
JMSF029O18+           AGCGATAGGTGGATCTTTTGTAGGGGGAATCCCCTTTGGCCATCAAGGCAGCGGCGTCGG
                      ____________________________________________________________
consensus             AGCGATAGGTGGATCTTTTGTAGGGGGAATCCCCTTTGGCCATCAAGGCAGCGGCGTCGG
 
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JMFN015D21+           AGAATACGAGGTAGTCAACGTCGGTGTATCGAACTTCCATGTGGGCATCTTGCCATTCGC
JMSF029O18+           AGAATACGAGGTAGTCAACGTCGGTGTATCGAACTTCCATGTGGGCATCTTGCCATTCGC
                      ____________________________________________________________
consensus             AGAATACGAGGTAGTCAACGTCGGTGTATCGAACTTCCATGTGGGCATCTTGCCATTCGC
 
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JMFN015D21+           CGTAGAGGATCAAGAAGAAGCGAAGAAATGCAGAGAATAGCAGCAAAGAGCGGAGGTTCA
JMSF029O18+           CGTAGAGGATCAAGAAGAAGCGAAGAAATGCAGAGAATAGCAGCAAAGAGCGGAGGTTCA
                      ____________________________________________________________
consensus             CGTAGAGGATCAAGAAGAAGCGAAGAAATGCAGAGAATAGCAGCAAAGAGCGGAGGTTCA
 
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JMFN015D21+           CCGCCGCCATGGATTTCATCAACGACTAGATTAAGCAACTGCGCAACTCAAAATGAACTA
JMSF029O18+           CCGCCGCCATGGATTTCATCAACGACTAGATTAAGCAACTGCGCAACTCAAAATGAACTA
                      ____________________________________________________________
consensus             CCGCCGCCATGGATTTCATCAACGACTAGATTAAGCAACTGCGCAACTCAAAATGAACTA
 
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JMFN015D21+           CTGTAAGAATTAAATTTCATTTGAGCATAGTTTGAATCCTTCGAGTTCTCCGG       
JMSF029O18+           CTGTAAGAATTAAATTTCATTTGAGCATAGTTTGAATCCTTCGAGTTCTCCGGCCATGGC
                      ____________________________________________________________
consensus             CTGTAAGAATTAAATTTCATTTGAGCATAGTTTGAATCCTTCGAGTTCTCCGGCCATGGC
 
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JMSF029O18+           GGCACTTTTGAATCGGAGCAAACCGGGGACGATTTGGGGGGACTTGACATGAAATCAATC
                      ____________________________________________________________
consensus             GGCACTTTTGAATCGGAGCAAACCGGGGACGATTTGGGGGGACTTGACATGAAATCAATC