| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS012B02 | Sequence | 588 | 002301 (4) | ref|XP_004234406.1| | 3e-07 | PREDICTED: uncharacterized protein LOC101254456 isoform X1 [Solanum lycopersicu | |||||
| JMFS109F11 | Sequence | 627 | 002301 (4) | ref|XP_009789214.1| | 1e-20 | PREDICTED: uncharacterized protein LOC104236874 isoform X1 [Nicotiana sylvestri | |||||
| JMSF029J23 | Sequence | 676 | 002301 (4) | ref|XP_009789214.1| | 8e-22 | PREDICTED: uncharacterized protein LOC104236874 isoform X1 [Nicotiana sylvestri | 743 | 010530 (4) | ref|XP_009605982.1| | 270 | PREDICTED: uncharacterized protein LOC104100459 [Nicotiana tomentosiformis] |
| JMSF035B11 | Sequence | 700 | 002301 (4) | ref|XP_009605982.1| | 144 | PREDICTED: uncharacterized protein LOC104100459 [Nicotiana tomentosiformis] | 749 | 010530 (4) | ref|XP_006353869.1| | 2e-83 | PREDICTED: uncharacterized protein LOC102602745 isoform X2 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMSF035B11+ TTCTGCCGAAACTCCAGCATCAGGTGATTGAAATATGGCTTCAGTTGCAAATA
____________________________________________________________
consensus TTCTGCCGAAACTCCAGCATCAGGTGATTGAAATATGGCTTCAGTTGCAAATA
. : . : . : . : . : . :
JMSF035B11+ AAGTGTTATCATTCACTGCCTCGCTGTTTTGATTGTCACTATCTTGCATTTCATTCTTGA
____________________________________________________________
consensus AAGTGTTATCATTCACTGCCTCGCTGTTTTGATTGTCACTATCTTGCATTTCATTCTTGA
. : . : . : . : . : . :
JMSF035B11+ GGGCATCTTTTTCTAATTCAACTCTATCATTGTGATTATTATCACCCATGACTGACATTT
____________________________________________________________
consensus GGGCATCTTTTTCTAATTCAACTCTATCATTGTGATTATTATCACCCATGACTGACATTT
. : . : . : . : . : . :
JMSF035B11+ CTTGTTGGGTTGTCAAAGGGTCCATATGCTGCTTCAATCTGGACATGCTGCGTTTGCTTA
JMFS109F11+ TGGACATGCTGCGTNTGCTTA
JMSF029J23+ CTGGACATGCTGCGTTTGCTTA
____________________________________________________________
consensus CTTGTTGGGTTGTCAAAGGGTCCATATGCTGCTTCAATCTGGACATGCTGCGTTTGCTTA
. : . : . : . : . : . :
JMSF035B11+ TTGATAAAGCAGCAAAGATAATCCCAGCCACTAGGATAATGCTGGCTACTCCTGCTCCCA
JMFS109F11+ TTGATAAAGCAGCAAAGATAATCCCAGCCACTAGGATAATGCTGGCTACTCCTGCTCCCA
JMSF029J23+ TTGATAAAGCAGCAAAGATAATCCCAGCCACTAGGATAATGCTGGCTACTCCTGCTCCCA
____________________________________________________________
consensus TTGATAAAGCAGCAAAGATAATCCCAGCCACTAGGATAATGCTGGCTACTCCTGCTCCCA
. : . : . : . : . : . :
JMSF035B11+ CAAGCCCTGCGACGGATTGCTTCTGCGGAGCCTCACTCGATGTTTCAGCTCCATCAGTTC
JMFS109F11+ CAAGCCCTGCGACGGATTGCTTCTGCGGAGCCTCACTCGATGTTTCAGCTCCATCAGTTC
JMFS012B02+ GATTGTTTCTGCGGAGCCTCACTTGATGTTTCAGCTCCATCAGTTC
JMSF029J23+ CAAGCCCTGCGACGGATTGCTTCTGCGGAGCCTCACTCGATGTTTCAGCTCCATCAGTTC
____________________________________________________________
consensus CAAGCCCTGCGACGGATTGCTTCTGCGGAGCCTCACTCGATGTTTCAGCTCCATCAGTTC
. : . : . : . : . : . :
JMSF035B11+ CAGACCATCCAGCGAATCCATCCACTGGAGAAATGGAATTAACCAAAACACTGCGTCTTT
JMFS109F11+ CAGACCATCCAGCGAATCCATCCACTGGAGAAATGGAATTAACCAAAACACTGCGTCTTT
JMFS012B02+ CAGACCATCCAGCGAATCCATCCACTGGAGAAATCGAATTAACC-AAACACTGCACCTTT
JMSF029J23+ CAGACCATCCAGCGAATCCATCCACTGGAGAAATGGAATTAACCAAAACACTGCGTCTTT
____________________________________________________________
consensus CAGACCATCCAGCGAATCCATCCACTGGAGAAATGGAATTAACCAAAACACTGCGTCTTT
. : . : . : . : . : . :
JMSF035B11+ CCAGCCAATTACGGTTTCTCGCGTGAGTATGCCCTCCAATAGAAAGTAAATGCTGCAGTC
JMFS109F11+ CCAGCCAATTAAGGTTTCTCGCGTGAGTATGCCCTACAATAGAAAGTAAATGCTGCAGTC
JMFS012B02+ CCAGCCAATTACGGTTTCTCGCGTGAGTATGCCCTCCAATAGAAAGTAAA---TGCAGTC
JMSF029J23+ CCAGCCAATTACGGTTTCTCGCGTGAGTATGCCCTCCAATAGAAAGTAAATGCTGCAGTC
____________________________________________________________
consensus CCAGCCAATTACGGTTTCTCGCGTGAGTATGCCCTCCAATAGAAAGTAAATGCTGCAGTC
. : . : . : . : . : . :
JMSF035B11+ TATTGCAATCCTTCTTCCCAACACGCACCCGTAACAACACGGTTGACGGTTTTCTACAAT
JMFS109F11+ TATTGCAATCCTTCTTCCCAACACGCACCCGTAACAACACGGTTGACGGTTTTCTACAAT
JMFS012B02+ TATTGCAATCCTTCTTCCCAACACGCATCC-TACCAACACGGTTGACGATTTTTTACAAT
JMSF029J23+ TATTGCAATCCTTCTTCCCAACACGCACCCGTAACAACACGGTTGACGGTTTTCTACAAT
____________________________________________________________
consensus TATTGCAATCCTTCTTCCCAACACGCACCCGTAACAACACGGTTGACGGTTTTCTACAAT
. : . : . : . : . : . :
JMSF035B11+ TGAAAGCTAATCGGAGGTGGAACGAGGTCGGGGACAATGTTGCAGTCAAAGAACTCATCT
JMFS109F11+ TGAAAGCTAATCGGAGGTGGAACGAGGTCGGGGACAATGTTGCAGTCAAAGAACTCATCT
JMFS012B02+ TGAAAGCTAATCGAAGCTGGAACGAGCTCGGGGACAATGTTGCAGTCAAAGAACTCATCT
JMSF029J23+ TGAAAGCTAATCGGAGGTGGAACGAGGTCGGGGACAATGTTGCAGTCAAAGAACTCATCT
____________________________________________________________
consensus TGAAAGCTAATCGGAGGTGGAACGAGGTCGGGGACAATGTTGCAGTCAAAGAACTCATCT
. : . : . : . : . : . :
JMSF035B11+ CTGAATGGTCAAATTTGCAGTTGGGATAAATGCAAGATAGTTGCTAAAGTGGAGCTTTTC
JMFS109F11+ CTGAATGGTCAAATTTGCAGTTGGGATAAATGCAAGATAGTTGCTAAAGTGGAGCTTTTC
JMFS012B02+ CTGAATGGTCACATTTGCAGTAGGGATAAATGTAAGATAGTTGCTAAAGTGGAACTTTTC
JMSF029J23+ CTGAATGGTCAAATTTGCAGTTGGGATAAATGCAAGATAGTTGCTAAAGTGGAGCTTTTC
____________________________________________________________
consensus CTGAATGGTCAAATTTGCAGTTGGGATAAATGCAAGATAGTTGCTAAAGTGGAGCTTTTC
. : . : . : . : . : . :
JMSF035B11+ AGTACAGAAGAGCATCAAAATGCGTCTCTCC
JMFS109F11+ AGTACAGAAGAGCATCAAAATGCGTCTCTCCCACTCGTGCACACATGTATAAGATATAGA
JMFS012B02+ AGTACAGAAGAACATCAAAATGCGTCTCT-CCACTCTTGCACACATGTATAAGATATA
JMSF029J23+ AGTACAGAAGAGCATCAAAATGCGTCTCTCCCACTCGTGCACACATGTATAAGATATAGA
____________________________________________________________
consensus AGTACAGAAGAGCATCAAAATGCGTCTCTCCCACTCGTGCACACATGTATAAGATATAGA
. : . : . : . : . : . :
JMFS109F11+ GAATGTTTGAAGTAAAATTCTAGGGTTTTTCTTGTCTGTATCGTGTTATGGTGAACGACC
JMSF029J23+ GAATGTTTGAAGTAAAATTCTAGGGTTTTTCTTGTCTGTATCGTGTTATGGTGAACGACC
____________________________________________________________
consensus GAATGTTTGAAGTAAAATTCTAGGGTTTTTCTTGTCTGTATCGTGTTATGGTGAACGACC
. : . : . : . : . : . :
JMFS109F11+ TATGCATCTCTCTCTCTCTCTCTTACTATGATTAAACCTA
JMSF029J23+ TATGCATCTCTCTCTCTCTCTCTTACTATGATTAAACCTACGTGCAAAACTGCAAATACC
____________________________________________________________
consensus TATGCATCTCTCTCTCTCTCTCTTACTATGATTAAACCTACGTGCAAAACTGCAAATACC