Contig 002298:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF029I02Sequence678002298 (2)gb|ADZ29096.1|4e-1211-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]685004288 (2)ref|NP_001234728.1|6e-109ISPH protein [Solanum lycopersicum] gb|ACY27516.1| ISPH protein [Solanum lycoper
JMSF044J04Sequence761002298 (2)gb|ADZ29096.1|1e-1391-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]718004288 (2)ref|NP_001234728.1|8e-117ISPH protein [Solanum lycopersicum] gb|ACY27516.1| ISPH protein [Solanum lycoper

Alignment

This contig is upended


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JMSF044J04+ TCATGAGAATATTTTACCATGGATCACGGAGGTGTGTTCAC
                      ____________________________________________________________
consensus TCATGAGAATATTTTACCATGGATCACGGAGGTGTGTTCAC
 
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JMSF044J04+ CTTTCTTGTGTTTCTCAACTACATTCCAAACCTTAGAAACCCATGGGCAGGTTGTATCAA
JMSF029I02+ ATGGNCAGGTTGTATCAA
                      ____________________________________________________________
consensus CTTTCTTGTGTTTCTCAACTACATTCCAAACCTTAGAAACCCATGGGCAGGTTGTATCAA
 
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JMSF044J04+ CTATTTGTACATTCTTTTCACTCAAAGTTAACATCTCATCGACAGCAGCCCCAAACGCAG
JMSF029I02+ CTATTTGTACATTCTTTTCACTCAAAGTTAACATCTCATCGACAGCAGCCCCAAACGCAG
                      ____________________________________________________________
consensus CTATTTGTACATTCTTTTCACTCAAAGTTAACATCTCATCGACAGCAGCCCCAAACGCAG
 
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JMSF044J04+ GCAAAACCACAACATCACCCTTGTCAACAACATTAAAATTTTTCTCTCCTTGGTCAATGG
JMSF029I02+ GCAAAACCACAACATCACCCTTGTCAACAACATTAAAATTTTTCTCTCCTTGGTCAATGG
                      ____________________________________________________________
consensus GCAAAACCACAACATCACCCTTGTCAACAACATTAAAATTTTTCTCTCCTTGGTCAATGG
 
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JMSF044J04+ GGATATTCTTGACTTCCATTTCCTCAAGCCGCTTATTCACTGTAGGGTTGTGTATAATTT
JMSF029I02+ GGATATTCTTGACTTCCATTTCCTCAAGCCGCTTATTCACTGTAGGGTTGTGTATAATTT
                      ____________________________________________________________
consensus GGATATTCTTGACTTCCATTTCCTCAAGCCGCTTATTCACTGTAGGGTTGTGTATAATTT
 
. : . : . : . : . : . :
JMSF044J04+ CATTTGTGATCCAAATCCTCTCAGTTGGAAATTGTTTTCTCGCTTCATACGCAATCTGGA
JMSF029I02+ CATTTGTGATCCAAATCCTCTCAGTTGGAAATTGTTTTCTCGCTTCATACGCAATCTGGA
                      ____________________________________________________________
consensus CATTTGTGATCCAAATCCTCTCAGTTGGAAATTGTTTTCTCGCTTCATACGCAATCTGGA
 
. : . : . : . : . : . :
JMSF044J04+ CTGCTCGCTCAACCCCCCAGCAGAAGCCATAGGCTTCTGCAAGTTTTATGGTAACATTTC
JMSF029I02+ CTGCTCGCTCAACCCCCCAGCAGAAGCCATAGGCTTCTGCAAGTTTTATGGTAACATTTC
                      ____________________________________________________________
consensus CTGCTCGCTCAACCCCCCAGCAGAAGCCATAGGCTTCTGCAAGTTTTATGGTAACATTTC
 
. : . : . : . : . : . :
JMSF044J04+ CCCATGTATATTCGTAGCCATTCTCTTTCAACTTCTTTATAATATCACTAGTATACTCGC
JMSF029I02+ CCCATGTATATTCGTAGCCATTCTCTTTCAACTTCTTTATAATATCACTAGTATACTCGC
                      ____________________________________________________________
consensus CCCATGTATATTCGTAGCCATTCTCTTTCAACTTCTTTATAATATCACTAGTATACTCGC
 
. : . : . : . : . : . :
JMSF044J04+ GATTCATGAGCTCAAGAGTAGCTTCTTTGTGACCAAAGCCCTTGCGATTGTAATTCGCAC
JMSF029I02+ GATTCATGAGCTCAAGAGTAGCTTCTTTGTGACCAAAGCCCTTGCGATTGTAATTCGCAC
                      ____________________________________________________________
consensus GATTCATGAGCTCAAGAGTAGCTTCTTTGTGACCAAAGCCCTTGCGATTGTAATTCGCAC
 
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JMSF044J04+ TTCTGGTCAAGTTCTTCCGGAACGTCTTAGGATCAAACTCCGAATCTACGG
JMSF029I02+ TTCTGGTCAAGTTCTTCCGGAACGTCTTAGGATCAAACTCCGAATCTACGGCCGGCGAGG
                      ____________________________________________________________
consensus TTCTGGTCAAGTTCTTCCGGAACGTCTTAGGATCAAACTCCGAATCTACGGCCGGCGAGG
 
. : . : . : . : . : . :
JMSF029I02+ AGGAGGAAGCTGTTTCTCCGGCGGAGCATCGGACTGAGAGAGGCTTCCGGAGATGGAAGA
                      ____________________________________________________________
consensus AGGAGGAAGCTGTTTCTCCGGCGGAGCATCGGACTGAGAGAGGCTTCCGGAGATGGAAGA
 
. : . : . : . : . : . :
JMSF029I02+ CTCTAGACTCCGGCAAGGAGATGTCGGTACGGATTGGTAAACGGGAGAATTGCAGAGGAA
                      ____________________________________________________________
consensus CTCTAGACTCCGGCAAGGAGATGTCGGTACGGATTGGTAAACGGGAGAATTGCAGAGGAA
 
. : . : . : . : . : . :
JMSF029I02+ TAGACATGATTCAGGGGAGAGTGCGCACGTTAGCTGATTGCGTTTGCAGTGTTGGAGCCC
                      ____________________________________________________________
consensus TAGACATGATTCAGGGGAGAGTGCGCACGTTAGCTGATTGCGTTTGCAGTGTTGGAGCCC