Contig 002298:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF029I02Sequence678002298 (2)gb|ADZ29096.1|4e-1211-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]685004288 (2)ref|NP_001234728.1|6e-109ISPH protein [Solanum lycopersicum] gb|ACY27516.1| ISPH protein [Solanum lycoper
JMSF044J04Sequence761002298 (2)gb|ADZ29096.1|1e-1391-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]718004288 (2)ref|NP_001234728.1|8e-117ISPH protein [Solanum lycopersicum] gb|ACY27516.1| ISPH protein [Solanum lycoper

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J04+                              TCATGAGAATATTTTACCATGGATCACGGAGGTGTGTTCAC
                      ____________________________________________________________
consensus                                TCATGAGAATATTTTACCATGGATCACGGAGGTGTGTTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J04+           CTTTCTTGTGTTTCTCAACTACATTCCAAACCTTAGAAACCCATGGGCAGGTTGTATCAA
JMSF029I02+                                                     ATGGNCAGGTTGTATCAA
                      ____________________________________________________________
consensus             CTTTCTTGTGTTTCTCAACTACATTCCAAACCTTAGAAACCCATGGGCAGGTTGTATCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J04+           CTATTTGTACATTCTTTTCACTCAAAGTTAACATCTCATCGACAGCAGCCCCAAACGCAG
JMSF029I02+           CTATTTGTACATTCTTTTCACTCAAAGTTAACATCTCATCGACAGCAGCCCCAAACGCAG
                      ____________________________________________________________
consensus             CTATTTGTACATTCTTTTCACTCAAAGTTAACATCTCATCGACAGCAGCCCCAAACGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J04+           GCAAAACCACAACATCACCCTTGTCAACAACATTAAAATTTTTCTCTCCTTGGTCAATGG
JMSF029I02+           GCAAAACCACAACATCACCCTTGTCAACAACATTAAAATTTTTCTCTCCTTGGTCAATGG
                      ____________________________________________________________
consensus             GCAAAACCACAACATCACCCTTGTCAACAACATTAAAATTTTTCTCTCCTTGGTCAATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J04+           GGATATTCTTGACTTCCATTTCCTCAAGCCGCTTATTCACTGTAGGGTTGTGTATAATTT
JMSF029I02+           GGATATTCTTGACTTCCATTTCCTCAAGCCGCTTATTCACTGTAGGGTTGTGTATAATTT
                      ____________________________________________________________
consensus             GGATATTCTTGACTTCCATTTCCTCAAGCCGCTTATTCACTGTAGGGTTGTGTATAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J04+           CATTTGTGATCCAAATCCTCTCAGTTGGAAATTGTTTTCTCGCTTCATACGCAATCTGGA
JMSF029I02+           CATTTGTGATCCAAATCCTCTCAGTTGGAAATTGTTTTCTCGCTTCATACGCAATCTGGA
                      ____________________________________________________________
consensus             CATTTGTGATCCAAATCCTCTCAGTTGGAAATTGTTTTCTCGCTTCATACGCAATCTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J04+           CTGCTCGCTCAACCCCCCAGCAGAAGCCATAGGCTTCTGCAAGTTTTATGGTAACATTTC
JMSF029I02+           CTGCTCGCTCAACCCCCCAGCAGAAGCCATAGGCTTCTGCAAGTTTTATGGTAACATTTC
                      ____________________________________________________________
consensus             CTGCTCGCTCAACCCCCCAGCAGAAGCCATAGGCTTCTGCAAGTTTTATGGTAACATTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J04+           CCCATGTATATTCGTAGCCATTCTCTTTCAACTTCTTTATAATATCACTAGTATACTCGC
JMSF029I02+           CCCATGTATATTCGTAGCCATTCTCTTTCAACTTCTTTATAATATCACTAGTATACTCGC
                      ____________________________________________________________
consensus             CCCATGTATATTCGTAGCCATTCTCTTTCAACTTCTTTATAATATCACTAGTATACTCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J04+           GATTCATGAGCTCAAGAGTAGCTTCTTTGTGACCAAAGCCCTTGCGATTGTAATTCGCAC
JMSF029I02+           GATTCATGAGCTCAAGAGTAGCTTCTTTGTGACCAAAGCCCTTGCGATTGTAATTCGCAC
                      ____________________________________________________________
consensus             GATTCATGAGCTCAAGAGTAGCTTCTTTGTGACCAAAGCCCTTGCGATTGTAATTCGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J04+           TTCTGGTCAAGTTCTTCCGGAACGTCTTAGGATCAAACTCCGAATCTACGG         
JMSF029I02+           TTCTGGTCAAGTTCTTCCGGAACGTCTTAGGATCAAACTCCGAATCTACGGCCGGCGAGG
                      ____________________________________________________________
consensus             TTCTGGTCAAGTTCTTCCGGAACGTCTTAGGATCAAACTCCGAATCTACGGCCGGCGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029I02+           AGGAGGAAGCTGTTTCTCCGGCGGAGCATCGGACTGAGAGAGGCTTCCGGAGATGGAAGA
                      ____________________________________________________________
consensus             AGGAGGAAGCTGTTTCTCCGGCGGAGCATCGGACTGAGAGAGGCTTCCGGAGATGGAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029I02+           CTCTAGACTCCGGCAAGGAGATGTCGGTACGGATTGGTAAACGGGAGAATTGCAGAGGAA
                      ____________________________________________________________
consensus             CTCTAGACTCCGGCAAGGAGATGTCGGTACGGATTGGTAAACGGGAGAATTGCAGAGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029I02+           TAGACATGATTCAGGGGAGAGTGCGCACGTTAGCTGATTGCGTTTGCAGTGTTGGAGCCC
                      ____________________________________________________________
consensus             TAGACATGATTCAGGGGAGAGTGCGCACGTTAGCTGATTGCGTTTGCAGTGTTGGAGCCC