| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN017L12 | Sequence | 526 | 002297 (14) | emb|CDY70033.1| | 1e-35 | BnaCnng66420D [Brassica napus] | |||||
| JMFN029B16 | Sequence | 522 | 002297 (14) | emb|CDY70033.1| | 7e-35 | BnaCnng66420D [Brassica napus] | |||||
| JMSF005C14 | Sequence | 320 | 002297 (14) | emb|CDY70033.1| | 3e-39 | BnaCnng66420D [Brassica napus] | 371 | 002297 (14) | emb|CDY70033.1| | 8e-37 | BnaCnng66420D [Brassica napus] |
| JMSF018I18 | Sequence | 509 | 002297 (14) | emb|CDY70033.1| | 4e-39 | BnaCnng66420D [Brassica napus] | 613 | 016081 | emb|CDY70033.1| | 1e-38 | BnaCnng66420D [Brassica napus] |
| JMSF025I19 | Sequence | 540 | 002297 (14) | emb|CDY70033.1| | 3e-38 | BnaCnng66420D [Brassica napus] | 485 | 002297 (14) | emb|CDY70033.1| | 2e-38 | BnaCnng66420D [Brassica napus] |
| JMSF029F07 | Sequence | 436 | 002297 (14) | emb|CDY70033.1| | 1e-38 | BnaCnng66420D [Brassica napus] | 394 | 002297 (14) | emb|CDY70033.1| | 6e-39 | BnaCnng66420D [Brassica napus] |
| JMSF038B21 | Sequence | 689 | 005220 (13) | ref|XP_009594550.1| | 2e-58 | PREDICTED: transcription factor UNE12-like, partial [Nicotiana tomentosiformis] | 423 | 002297 (14) | emb|CDY70033.1| | 6e-39 | BnaCnng66420D [Brassica napus] |
| JMSF041G02 | Sequence | 482 | 002297 (14) | ref|XP_002519426.1| | 2e-25 | o-methyltransferase, putative [Ricinus communis] gb|EEF42840.1| o-methyltransfer | 447 | 002297 (14) | ref|XP_002519426.1| | 1e-25 | o-methyltransferase, putative [Ricinus communis] gb|EEF42840.1| o-methyltransfer |
| JMSF049L14 | Sequence | 540 | 002297 (14) | emb|CDY70033.1| | 3e-38 | BnaCnng66420D [Brassica napus] | 483 | 002297 (14) | emb|CDY70033.1| | 2e-38 | BnaCnng66420D [Brassica napus] |
This contig is upended
. : . : . : . : . : . :
JMSF041G02+ TTTTTTTTTTGGGAGGAAA
JMFN029B16+ AGGAAA
JMFN017L12+ AGGAAA
____________________________________________________________
consensus TTTTTTTTTTGGGAGGAAA
. : . : . : . : . : . :
JMSF041G02+ GGAAGTGGTTGATTTAAAAAGTGAGAACTAAAAGTGACAGTGCCACCAGAGTCAGAGGAT
rJMSF041G02- ACTAAAAGTGACAGTGCCACCAGAGTCAGAGGAT
JMFN029B16+ GGAAGTGGTTGATTTAAAAAGTGAGAACTAAAAGTGACAGTGCCACCAGAGTCAGAGGAT
JMFN017L12+ GGAAGTGGTTGATTTAAAAAGTGAGAACTAAAAGTGACAGTGCCACCAGAGTCAGAGGAT
JMSF049L14+ TTTAAAAAGTGAGAACTAAAAGTGACAGTGCCACCAGAGTCAGAGGAT
JMSF018I18+ AAGTGACAGTGCCACCAGAGTCAGAGGAT
JMSF025I19+ TTTAAAAAGTGAGAACTAAAAGTGACAGTGCCACCAGAGTCAGAGGAT
rJMSF049L14- GAT
____________________________________________________________
consensus GGAAGTGGTTGATTTAAAAAGTGAGAACTAAAAGTGACAGTGCCACCAGAGTCAGAGGAT
. : . : . : . : . : . :
JMSF041G02+ GTCCACTGGTATTTACTCTAACCTTTATCTATTAGCTAGCTAGGTGCCTTACTTGGACCA
rJMSF041G02- GTCCACTGGTATTTACTCTAACCTTTATCTATTAGCTAGCTAGGTGCCTTACTTGGACCA
JMFN029B16+ GTCCACTGGTATTTACTCTAACCTTTATCTATTAGCTAGCTAGGTGCCTTACTTGGACCA
JMFN017L12+ GTCCACTGGTATTTACTCTAACCTTTATCTATTAGCTAGCTAGGTGCCTTACTTGGACCA
JMSF049L14+ GTCCACTGGTATTTACTCTAACCTTTATCTATTAGCTAGCTAGGTGCCTTACTTGGACCA
JMSF018I18+ GTCCACTGGTATTTACTCTAACCTTTATCTATTAGCTAGCTAGGTGCCTTACTTGGACCA
JMSF025I19+ GTCCACTGGTATTTACTCTAACCTTTATCTATTAGCTAGCTAGGTGCCTTACTTGGACCA
rJMSF049L14- GTCCACTGGTATTTACTCTAACCTTTATCTATTAGCTAGCTAGGTGCCTTACTTGGACCA
rJMSF025I19- GGTATTTACTCTAACCTTTATCTATTAGCTAGCTAGGTGCCTTACTTGGACCA
JMSF029F07+ TTGGACCA
____________________________________________________________
consensus GTCCACTGGTATTTACTCTAACCTTTATCTATTAGCTAGCTAGGTGCCTTACTTGGACCA
. : . : . : . : . : . :
JMSF041G02+ AATTAAACGCCCCAATAATTTTATATAAGGGTTTCATACATCAATATGCGGATAGTACAA
rJMSF041G02- AATTAAACGCCCCAATAATTTTATATAAGGGTTTCATACATCAATATGCGGATAGTACAA
JMFN029B16+ AATTAAACGCCCCAATAATTTTATATAAGGGTTTCATACATCAATATGCGGATAGTACAA
JMFN017L12+ AATTAAACGCCCCAATAATTTTATATAAGGGTTTCATACATCAATATGCGGATAGTACAA
JMSF049L14+ AATTAAACGCCCCAATAATTTTATATAAGGGTTTCATACATCAATATGCGGATAGTACAA
JMSF018I18+ AATTAAACGCCCCAATAATTTTATATAAGGGTTTCATACATCAATATGCGGATAGTACAA
JMSF025I19+ AATTAAACGCCCCAATAATTTTATATAAGGGTTTCATACATCAATATGCGGATAGTACAA
rJMSF049L14- AATTAAACGCCCCAATAATTTTATATAAGGGTTTCATACATCAATATGCGGATAGTACAA
rJMSF025I19- AATTAAACGCCCCAATAATTTTATATAAGGGTTTCATACATCAATATGCGGATAGTACAA
rJMSF029F07- AGGGTTTCATACATCAATATGCGGATAGTACAA
rJMSF038B21- AGGGTTTCATACATCAATATGCGGATAGTACAA
rJMSF005C14- CATCAATATGCGGATAGTACAA
JMSF029F07+ AATTAAACGCCCCAATAATTTTATATAAGGGTTTCATACATCAATATGCGGATAGTACAA
____________________________________________________________
consensus AATTAAACGCCCCAATAATTTTATATAAGGGTTTCATACATCAATATGCGGATAGTACAA
. : . : . : . : . : . :
JMSF041G02+ TATAATATAAATGTGAATGGAAGCATATAATCATAGATTTTGTGGTGTTTCGAGTGGTTA
rJMSF041G02- TATAATATAAATGTGAATGGAAGCATATAATCATAGATTTTGTGGTGTTTCGAGTGGTTA
JMFN029B16+ TATAATATAAATGTGAATGGAAGCATATAATCATAGATTTTGTGGTGTTTCGAGTGGTTA
JMFN017L12+ TATAATATAAATGTGAATGGAAGCATATAATCATAGATTTTGTGGTGTTTCGAGTGGTTA
JMSF049L14+ TATAATATAAATGTGAATGGAAGCATATAATCATAGATTTTGTGGTGTTTCGAGTGGTTA
JMSF018I18+ TATAATATAAATGTGAATGGAAGCATATAATCATAGATTTTGTGGTGTTTCGAGTGGTTA
JMSF025I19+ TATAATATAAATGTGAATGGAAGCATATAATCATAGATTTTGTGGTGTTTCGAGTGGTTA
rJMSF049L14- TATAATATAAATGTGAATGGAAGCATATAATCATAGATTTTGTGGTGTTTCGAGTGGTTA
rJMSF025I19- TATAATATAAATGTGAATGGAAGCATATAATCATAGATTTTGTGGTGTTTCGAGTGGTTA
rJMSF029F07- TATAATATAAATGTGAATGGAAGCATATAATCATAGATTTTGTGGTGTTTCGAGTGGTTA
rJMSF038B21- TATAATATAAATGTGAATGGAAGCATATAATCATAGATTTTGTGGTGTTTCGAGTGGTTA
rJMSF005C14- TATAATATAAATGTGAATGGAAGCATATAATCATAGATTTTGTGGTGTTTCGAGTGGTTA
JMSF005C14+ TGTGGTGTTTCGAGTGGTTA
JMSF029F07+ TATAATATAAATGTGAATGGAAGCATATAATCATAGATTTTGTGGTGTTTCGAGTGGTTA
____________________________________________________________
consensus TATAATATAAATGTGAATGGAAGCATATAATCATAGATTTTGTGGTGTTTCGAGTGGTTA
. : . : . : . : . : . :
JMSF041G02+ TGCAGTCGGTGTTAACGGCATGGTCGGATGAAGAGTGCAAGGCGATCATGAACAACTGCT
rJMSF041G02- TGCAGTCGGTGTTAACGGCATGGTCGGATGAAGAGTGCAAGGCGATCATGAACAACTGCT
JMFN029B16+ TGCAGTCGGTGTTAACGGCATGGTCGGATGAAGAGTGCAAGGCGATCATGAACAACTGCT
JMFN017L12+ TGCAGTCGGTGTTAACGGCATGGTCGGATGAAGAGTGCAAGGCGATCATGAACAACTGCT
JMSF049L14+ TGCAGTCGGTGTTAACGGCATGGTCGGATGAAGAGTGCAAGGCGATCATGAACAACTGCT
JMSF018I18+ TGCAGTCGGTGTTAACGGCATGGTCGGATGAAGAGTGCAAGGCGATCATGAACAACTGCT
JMSF025I19+ TGCAGTCGGTGTTAACGGCATGGTCGGATGAAGAGTGCAAGGCGATCATGAACAACTGCT
rJMSF049L14- TGCAGTCGGTGTTAACGGCATGGTCGGATGAAGAGTGCAAGGCGATCATGAACAACTGCT
rJMSF025I19- TGCAGTCGGTGTTAACGGCATGGTCGGATGAAGAGTGCAAGGCGATCATGAACAACTGCT
rJMSF029F07- TGCAGTCGGTGTTAACGGCATGGTCGGATGAAGAGTGCAAGGCGATCATGAACAACTGCT
rJMSF038B21- TGCAGTCGGTGTTAACGGCATGGTCGGATGAAGAGTGCAAGGCGATCATGAACAACTGCT
rJMSF005C14- TGCAGTCGGTGTTAACGGCATGGTCGGATGAAGAGTGCAAGGCGATCATGAACAACTGCT
JMSF005C14+ TGCAGTCGGTGTTAACGGCATGGTCGGATGAAGAGTGCAAGGCGATCATGAACAACTGCT
JMSF029F07+ TGCAGTCGGTGTTAACGGCATGGTCGGATGAAGAGTGCAAGGCGATCATGAACAACTGCT
____________________________________________________________
consensus TGCAGTCGGTGTTAACGGCATGGTCGGATGAAGAGTGCAAGGCGATCATGAACAACTGCT
. : . : . : . : . : . :
JMSF041G02+ ATGCTGCACTTTCACAGGGAGGAAAGTTGATTGTTTGCGAGCCAGTTTTGCCCATCCAAA
rJMSF041G02- ATGCTGCACTTTCACAGGGAGGAAAGTTGATTGTTTGCGAGCCAGTTTTGCCCATCCAAA
JMFN029B16+ ATGCTGCACTTTCACAGGGAGGAAAGTTGATTGTTTGCGAGCCAGTTTTGCCCATCCAAA
JMFN017L12+ ATGCTGCACTTTCACAGGGAGGAAAGTTGATTGTTTGCGAGCCAGTTTTGCCCATCCAAA
JMSF049L14+ ATGCTGCACTTTCACAGGGAGGAAAGTTGATTGTTTGCGAGCCAGTTTTGCCCATCCAAA
JMSF018I18+ ATGCTGCACTTTCACAGGGAGGAAAGTTGATTGTTTGCGAGCCAGTTTTGCCCATCCAAA
JMSF025I19+ ATGCTGCACTTTCACAGGGAGGAAAGTTGATTGTTTGCGAGCCAGTTTTGCCCATCCAAA
rJMSF049L14- ATGCTGCACTTTCACAGGGAGGAAAGTTGATTGTTTGCGAGCCAGTTTTGCCCATCCAAA
rJMSF025I19- ATGCTGCACTTTCACAGGGAGGAAAGTTGATTGTTTGCGAGCCAGTTTTGCCCATCCAAA
rJMSF029F07- ATGCTGCACTTTCACAGGGAGGAAAGTTGATTGTTTGCGAGCCAGTTTTGCCCATCCAAA
rJMSF038B21- ATGCTGCACTTTCACAGGGAGGAAAGTTGATTGTTTGCGAGCCAGTTTTGCCCATCCAAA
rJMSF005C14- ATGCTGCACTTTCACAGGGAGGAAAGTTGATTGTTTGCGAGCCAGTTTTGCCCATCCAAA
JMSF005C14+ ATGCTGCACTTTCACAGGGAGGAAAGTTGATTGTTTGCGAGCCAGTTTTGCCCATCCAAA
JMSF029F07+ ATGCTGCACTTTCACAGGGAGGAAAGTTGATTGTTTGCGAGCCAGTTTTGCCCATCCAAA
____________________________________________________________
consensus ATGCTGCACTTTCACAGGGAGGAAAGTTGATTGTTTGCGAGCCAGTTTTGCCCATCCAAA
. : . : . : . : . : . :
JMSF041G02+ CTGACGACACTCAAAGAACACGATTTCTCCTTGGATCAGACATCTTTATCATGAATATGT
rJMSF041G02- CTGACGACACTCAAAGAACACGATTTCTCCTTGGATCAGACATCTTTATCATGAATATGT
JMFN029B16+ CTGACGACACTCAAAGAACACGATTTCTCCTTGGATCAGACATCTTTATCATGAATATGT
JMFN017L12+ CTGACGACACTCAAAGAACACGATTTCTCCTTGGATCAGACATCTTTATCATGAATATGT
JMSF049L14+ CTGACGACACTCAAAGAACACGATTTCTCCTTGGATCAGACATCTTTATCATGAATATGT
JMSF018I18+ CTGACGACACTCAAAGAACACGATTTCTCCTTGGATCAGACATCTTTATCATGAATATGT
JMSF025I19+ CTGACGACACTCAAAGAACACGATTTCTCCTTGGATCAGACATCTTTATCATGAATATGT
rJMSF049L14- CTGACGACACTCAAAGAACACGATTTCTCCTTGGATCAGACATCTTTATCATGAATATGT
rJMSF025I19- CTGACGACACTCAAAGAACACGATTTCTCCTTGGATCAGACATCTTTATCATGAATATGT
rJMSF029F07- CTGACGACACTCAAAGAACACGATTTCTCCTTGGATCAGACATCTTTATCATGAATATGT
rJMSF038B21- CTGACGACACTCAAAGAACACGATTTCTCCTTGGATCAGACATCTTTATCATGAATATGT
rJMSF005C14- CTGACGACACTCAAAGAACACGATTTCTCCTTGGATCAGACATCTTTATCATGAATATGT
JMSF005C14+ CTGACGACACTCAAAGAACACGATTTCTCCTTGGATCAGACATCTTTATCATGAATATGT
JMSF029F07+ CTGACGACACTCAAAGAACACGATTTCTCCTTGGATCAGACATCTTTATCATGAATATGT
____________________________________________________________
consensus CTGACGACACTCAAAGAACACGATTTCTCCTTGGATCAGACATCTTTATCATGAATATGT
. : . : . : . : . : . :
JMSF041G02+ ATAGGGCCAAGAGAAAACACTGGACCGAGGAAGCGTACC
rJMSF041G02- ATAGGGCCAAGAGAAAACACTGGACCGAGGAAGCGTACC
JMFN029B16+ ATAGGGCCAAGAGAAAACACTGGACCGAGGAAGCGTACCGGCAGCTTGGCCTGTCGGTCG
JMFN017L12+ ATAGGGCCAAGAGAAAACACTGGACCGAGGAAGCGTACCGGCAGCTTGGCCTGTCGGTCG
JMSF049L14+ ATAGGGCCAAGAGAAAACACTGGACCGAGGAAGCGTACCGGCAGCTTGGCCTGTCGGTCG
JMSF018I18+ ATAGGGCCAAGAGAAAACACTGGACCGAGGAAGCGTACCGGCAGCTTGGCCTGTCGGTCG
JMSF025I19+ ATAGGGCCAAGAGAAAACACTGGACCGAGGAAGCGTACCGGCAGCTTGGCCTGTCGGTCG
rJMSF049L14- ATAGGGCCAAGAGAAAACACTGGACCGAGGAAGCGTACCGGCAGCTTGGCCTGTCGGTCG
rJMSF025I19- ATAGGGCCAAGAGAAAACACTGGACCGAGGAAGCGTACCGGCAGCTTGGCCTGTCGGTCG
rJMSF029F07- ATAGGGCCAAGAGAAAACACTGGACCGAGGAAGCGTACCGGCAGCTTGGCCTGTCGGTCG
rJMSF038B21- ATAGGGCCAAGAGAAAACACTGGACCGAGGAAGCGTACCGGCAGCTTGGCCTGTCGGTCG
rJMSF005C14- ATAGGGCCAAGAGAAAACACTGGACCGAGGAAGCGTACCGGCAGCTTGGCCTGTCGGTCG
JMSF005C14+ ATAGGGCCAAGAGAAAACACTGGACCGAGGAAGCGTACCGGCAGCTTGGCCTGTCGGTCG
JMSF029F07+ ATAGGGCCAAGAGAAAACACTGGACCGAGGAAGCGTACCGGCAGCTTGGCCTGTCGGTCG
____________________________________________________________
consensus ATAGGGCCAAGAGAAAACACTGGACCGAGGAAGCGTACCGGCAGCTTGGCCTGTCGGTCG
. : . : . : . : . : . :
JMFN029B16+ GGTTTCGCACTTTCAAGGCGTACTACATGGATTTCT
JMFN017L12+ GGTTTCGCACTTTCAAGGCGTACTACATGGATTTCTTC
JMSF049L14+ GGTTTCGCACTTTCAAGGCGTACTACATGGATTTCTTCCTTGCCGTCTTAGAATTTCACT
JMSF018I18+ GGTTTCGCACTTTCAAGGCGTACTACATGGATTTCTTCCTTGCCGTCTTAGAATTTCAG
JMSF025I19+ GGTTTCGCACTTTCAAGGCGTACTACATGGATTTCTTCCTTGCCGTCTTAGAATTTCACT
rJMSF049L14- GGTTTCGCACTTTCAAGGCGTACTACATGGATTTCTTCCTTGCCGTCTTAGAATTTCACT
rJMSF025I19- GGTTTCGCACTTTCAAGGCGTACTACATGGATTTCTTCCTTGCCGTCTTAGAATTTCACT
rJMSF029F07- GGTTTCGCACTTTCAAGGCGTACTACATGGATTTCTTCCTTGCCGTCTTAGAATTTCACC
rJMSF038B21- GGTTTCGCACTTTCAAGGCGTACTACATGGATTTCTTCCTTGCCGTCTTAGAATTTCAC
rJMSF005C14- GGTTTCGCACTTTCAAGGCGTACTACATGGATTTCTTCCTTGCCGTCTT
JMSF005C14+ GGTTTCGCACTTTCAAGGCGTACTACATGGATTTCTTCCTTGCCGTCTTAGAATTTCACC
JMSF029F07+ GGTTTCGCACTTTCAAGGCGTACTACATGGATTTCTTCCTTGCCGTCTTAGAATTTCACC
____________________________________________________________
consensus GGTTTCGCACTTTCAAGGCGTACTACATGGATTTCTTCCTTGCCGTCTTAGAATTTCACT