Contig 002295:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024L23Sequence655002295 (4)ref|XP_009802254.1|2e-75PREDICTED: toll/interleukin-1 receptor-like protein, partial [Nicotiana sylvest749017152ref|XP_010043221.1|4e-10PREDICTED: TMV resistance protein N-like [Eucalyptus grandis] ref|XP_010043222.1
JMSF029C17Sequence699002295 (4)ref|XP_009802254.1|5e-77PREDICTED: toll/interleukin-1 receptor-like protein, partial [Nicotiana sylvest748002827 (3)ref|XP_004246393.1|1e-72PREDICTED: NHP2-like protein 1 [Solanum lycopersicum] ref|XP_004247866.1| PREDIC
JMSF042F10Sequence769002295 (4)ref|XP_009802254.1|1e-79PREDICTED: toll/interleukin-1 receptor-like protein, partial [Nicotiana sylvest772016172
JMSF050H06Sequence675002295 (4)ref|XP_009802254.1|6e-73PREDICTED: toll/interleukin-1 receptor-like protein, partial [Nicotiana sylvest158017279

Alignment

This contig is upended


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JMSF042F10+                      ATACCATATATCCCAATCATGCGAACATCATTTTCATGTGTTTCATAAT
                      ____________________________________________________________
consensus                        ATACCATATATCCCAATCATGCGAACATCATTTTCATGTGTTTCATAAT
 
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JMSF050H06+                  GAGCACGTGATCAACTCGAGATTCAATTCCAACTACATGCTTGGCAACAAAGA
JMSF042F10+           TGAATTGGAGCACCTGATCAACTCGAGATTCAAGTCCAACTTCATGCTTCGCAACAAACA
                      ____________________________________________________________
consensus             TGAATTGGAGCACGTGATCAACTCGAGATTCAATTCCAACTTCATGCTTGGCAACAAAGA
 
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JMSF024L23+                                        TCTTGAACGATTTCATCAATGAACTTGGATT
JMSF050H06+           TAGGCACCCGACTTACTACCAAATGGACCTCTTGAATGATTTCATCAATAAATTTTGACT
JMSF042F10+           TTGGCTTCGGACTTACTACCGGTACAATGTCTTGAACGATTTCATCAATGAACTTGGATT
JMSF029C17+                                        TCTTGAACGATTTCATCAATGAACTNGGATT
                      ____________________________________________________________
consensus             TTGGCTTCGGACTTACTACCGGTTGGATGTCTTGAACGATTTCATCAATGAACTTGGATT
 
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JMSF024L23+           CATACCCATTGGCGAAGCCTTGCAAATCCCATCCTGACATATTTGCAACTTTAGTGAGTG
JMSF050H06+           CATACCCATTAGCAGTGCCTTGCAAATCCCATCCTGACATATTTGCAACTTTAGTGAGTG
JMSF042F10+           CATACCCATTGGCGAAGCCTTGCAAATCCCATCCTGACATATTTGCAACTTTAGTGAGTG
JMSF029C17+           CATACCCATTGGCGAAGCCTTGCAAATCCCATCCTGACATATTTGCAACTTTAGTGAGTG
                      ____________________________________________________________
consensus             CATACCCATTGGCGAAGCCTTGCAAATCCCATCCTGACATATTTGCAACTTTAGTGAGTG
 
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JMSF024L23+           CATCTCTCCATTTTTGTACCTTGTCGCTTCCGCTAAAACGTTCTTCGTGCTTTGCCAGTG
JMSF050H06+           CATCTCTCCATTTTTGTACCTTATCACTTCCCCCAAAACGTTCTTCATGATTTGCCAAGG
JMSF042F10+           CATCTCTCCATTTTTGTACCTTGTCGCTTCCGCTAAAACGTTCTTCGTGCTTTGCCAGTG
JMSF029C17+           CATCTCTCCATTTTTGTACCTTGTCGCTTCCGCTAAAACGTTCTTCGTGCTTTGCCAGTG
                      ____________________________________________________________
consensus             CATCTCTCCATTTTTGTACCTTGTCGCTTCCGCTAAAACGTTCTTCGTGCTTTGCCAGTG
 
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JMSF024L23+           CCATACCGTAATTCCCACTTTGACTACGCACTTCAGAAGGCTCAACGTCATAAAAAATAG
JMSF050H06+           CCATGTTGTACCTTTCACTTTGAATACACACATCGGAAGGCTTAACGTCATAAAAAATAG
JMSF042F10+           CCATACCGTAATTCCCACTTTGACTACGCACTTCAGAAGGCTCAACGTCATAAAAAATAG
JMSF029C17+           CCATACCGTAATTCCCACTTTGACTACGCACTTCAGAAGGCTCAACGTCATAAAAAATAG
                      ____________________________________________________________
consensus             CCATACCGTAATTCCCACTTTGACTACGCACTTCAGAAGGCTCAACGTCATAAAAAATAG
 
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JMSF024L23+           GATAGACTAACTGTTTTCCTTTCTCCCTACACTCGAGGATTTGAAGCAATTCGTCAAGGC
JMSF050H06+           GAAAGACTAATTGTTTTCCCTTCTCCTTGCACTCGAGGATTTGAACCAGTTCGTCAAGGC
JMSF042F10+           GATAGACTAACTGTTTTCCTTTCTCCCTACACTCGAGGATTTGAAGCAATTCGTCAAGGC
JMSF029C17+           GATAGACTAACTGTTTTCCTTTCTCCCTACACTCGAGGATTTGAAGCAATTCGTCAAGGC
                      ____________________________________________________________
consensus             GATAGACTAACTGTTTTCCTTTCTCCCTACACTCGAGGATTTGAAGCAATTCGTCAAGGC
 
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JMSF024L23+           ACCACCTAGACGAGGCATAGTTTTTCGAGAAAACTATGATAGAGACCCTTGAATTTTGGA
JMSF050H06+           ACCACCTAGACAAAGCATATTTTTTCGAGAAGACTATAATAGAGATTCTTGAACTTTGGA
JMSF042F10+           ACCACCTAGACGAGGCATAGTTTTTCGAGAAAACTATGATAGAGACCCTTGAATTTTGGA
JMSF029C17+           ACCACCTAGACGAGGCATAGTTTTTCGAGAAAACTATGATAGAGACCCTTGAATTTTGGA
                      ____________________________________________________________
consensus             ACCACCTAGACGAGGCATAGTTTTTCGAGAAAACTATGATAGAGACCCTTGAATTTTGGA
 
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JMSF024L23+           TTGCTCTGGTGAGTTCAGGCGCAAGAGATTCGCCCTTTTTTAGCTCCTCTTCGTCTCTGA
JMSF050H06+           TTGCTCTCATGAGTTCAAGCGCTAGAGATTCGCCCTTTCTGAGCTCCTCTTTGTCTCTGT
JMSF042F10+           TTGCTCTGGTGAGTTCAGGCGCAAGAGATTCGCCCTTTTTTAGCTCCTCTTCGTCTCTGA
JMSF029C17+           TTGCTCTGGTGAGTTCAGGCGCAAGAGATTCGCCCTTTTTTAGCTCCTCTTCGTCTCTGA
                      ____________________________________________________________
consensus             TTGCTCTGGTGAGTTCAGGCGCAAGAGATTCGCCCTTTTTTAGCTCCTCTTCGTCTCTGA
 
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JMSF024L23+           AGGTGTGAATACTTGCATTACATAGTGCAGAATAAAGATGACTGGTAAAAGTTTTGCGCG
JMSF050H06+           ATGTTCGAATACCTGCATTACATAATGCAGAATAAAGATGATCAGTAAATGTTTTGCGTG
JMSF042F10+           AGGTGTGAATACTTGCATTACATAGTGCAGAATAAAGATGACTGGTAAAAGTTTTGCGCG
JMSF029C17+           AGGTGTGAATACTTGCATTACATAGTGCAGAATAAAGATGACTGGTAAAAGTTTTGCGCG
                      ____________________________________________________________
consensus             AGGTGTGAATACTTGCATTACATAGTGCAGAATAAAGATGACTGGTAAAAGTTTTGCGCG
 
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JMSF024L23+           TATCTTCACCTCTGAAACTCAAGAACACATCGTATTCCCAAATGGAAGGTTGAAGGTTGA
JMSF050H06+           TGTCTTCACCTCTGAAGCTCAAGAACACATCGTATTCCCAAGCGAAAGGTTCAAGGTTGA
JMSF042F10+           TATCTTCACCTCTGAAACTCAAGAACACATCGTATTCCCAAATGGAAGGTTGAAGGTTGA
JMSF029C17+           TATCTTCACCTCTGAAACTCAAGAACACATCGTATTCCCAAATGGAAGGTTGAAGGTTGA
                      ____________________________________________________________
consensus             TATCTTCACCTCTGAAACTCAAGAACACATCGTATTCCCAAATGGAAGGTTGAAGGTTGA
 
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JMSF024L23+           TTGTAGAGATGGCCATAGGAATTGAAGTGAGCAAAAGGCAGGAAAGCTAGAGAAGATTGA
JMSF050H06+           TTGTGGAGCTGGACATAG                                          
JMSF042F10+           TTGTAGAGATGGCCATAGGAATTGAAGTGAGCAAAAGGCAGGAAAGCTAGAGAAGATTGA
JMSF029C17+           TTGTAGAGATGGCCATAGGAATTGAAGTGAGCAAAAGGCAGGAAAGCTAGAGAAGATTGA
                      ____________________________________________________________
consensus             TTGTAGAGATGGCCATAGGAATTGAAGTGAGCAAAAGGCAGGAAAGCTAGAGAAGATTGA
 
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JMSF024L23+           AGAAGAGGCTACTTAGTGTGCTTGTGTTGGGAAGGAACT                     
JMSF042F10+           AGAAGAGGCTACTTAGTGTGCTTGTGTTGGGAAGGAACTGATCGAATGAAAGAAAGCTCC
JMSF029C17+           AGAAGAGGCTACTTAGTGTGCTTGTGTTGGGAAGGAACTGATCGAATGAAAGAAAACTCC
                      ____________________________________________________________
consensus             AGAAGAGGCTACTTAGTGTGCTTGTGTTGGGAAGGAACTGATCGAATGAAAGAAAGCTCC