| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF014J09 | Sequence | 487 | 002293 (6) | ref|XP_010536443.1| | 1e-15 | PREDICTED: high mobility group B protein 9 [Tarenaya hassleriana] | 713 | 009367 (5) | ref|XP_006440388.1| | 1e-72 | hypothetical protein CICLE_v10021945mg [Citrus clementina] gb|ESR53628.1| hypoth |
| JMSF026O20 | Sequence | 604 | 002293 (6) | ref|XP_010536443.1| | 6e-34 | PREDICTED: high mobility group B protein 9 [Tarenaya hassleriana] | 750 | 002293 (6) | ref|XP_009803670.1| | 271 | PREDICTED: high mobility group B protein 9-like [Nicotiana sylvestris] |
| JMSF028O20 | Sequence | 232 | 002293 (6) | ||||||||
| JMSF045E02 | Sequence | 662 | 002293 (6) | ref|XP_009624109.1| | 3e-75 | PREDICTED: high mobility group B protein 9 [Nicotiana tomentosiformis] | 819 | 002293 (6) | ref|XP_009803670.1| | 244 | PREDICTED: high mobility group B protein 9-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF045E02- ATCGATC
____________________________________________________________
consensus ATCGATC
. : . : . : . : . : . :
rJMSF045E02- TGTTGCGAGCAGGAATGAAAAAAGAAGTACATTACATGTTCAATATTGTTTCAATTTTCA
____________________________________________________________
consensus TGTTGCGAGCAGGAATGAAAAAAGAAGTACATTACATGTTCAATATTGTTTCAATTTTCA
. : . : . : . : . : . :
rJMSF045E02- TGAGTCGAGAATTTACAGGTTGATGATATCGATCTTAGCTTGTGTCGCTGGCTGGCTCGA
rJMSF026O20- GGTTGATGATATCGATCTTAGCTTGTGTCGCTGGCTGGCTCGA
____________________________________________________________
consensus TGAGTCGAGAATTTACAGGTTGATGATATCGATCTTAGCTTGTGTCGCTGGCTGGCTCGA
. : . : . : . : . : . :
rJMSF045E02- TCACTAGCAATTAATAAGGAGCCATCATCATCTTCAATTCTTCTTCTTGTCTCTGTACTC
rJMSF026O20- TCACTAGCAATTAATAAGGAGCCATCATCATCTTCAATTCTTCTTCTTGTCTCTGTACTC
____________________________________________________________
consensus TCACTAGCAATTAATAAGGAGCCATCATCATCTTCAATTCTTCTTCTTGTCTCTGTACTC
. : . : . : . : . : . :
rJMSF045E02- CTTCAATTCCCTCTGGTATCTCTCCTTGTCTTTCAATCCATAGTTCTGATAGACTACTCT
rJMSF026O20- CTTCAATTCCCTCTGGTATCTCTCCTTGTCTTTCAATCCATAGTTCTGATAGACTACTCT
____________________________________________________________
consensus CTTCAATTCCCTCTGGTATCTCTCCTTGTCTTTCAATCCATAGTTCTGATAGACTACTCT
. : . : . : . : . : . :
rJMSF045E02- TTGTTCAGCGCTGAGATTGTTCCAAGACTCTCCAATCATTTTTGTGAACTCCCTCTCTCG
rJMSF026O20- TTGTTCAGCGCTGAGATTGTTCCAAGACTCTCCAATCATTTTTGTGAACTCCCTCTCTCG
____________________________________________________________
consensus TTGTTCAGCGCTGAGATTGTTCCAAGACTCTCCAATCATTTTTGTGAACTCCCTCTCTCG
. : . : . : . : . : . :
rJMSF045E02- GGTTGGGTAGAGAGACTTGAGCACGGAGTGCTTTTCAGCAAAGAAAAAGTTGTATCCACT
rJMSF026O20- GGTTGGGTAGAGAGACTTGAGCACGGAGTGCTTTTCAGCAAAGAAAAAGTTGTATCCACT
____________________________________________________________
consensus GGTTGGGTAGAGAGACTTGAGCACGGAGTGCTTTTCAGCAAAGAAAAAGTTGTATCCACT
. : . : . : . : . : . :
rJMSF045E02- CCTGTTGGGCTTTGGGCGAAAGGGGTCGCCGCCACTGCCTTTCTTCTTTCTCCTCCTCCG
rJMSF026O20- CCTGTTGGGCTTTGGGCGAAAGGGGTCGCCGCCACTGCCTTTCTTCTTTCTCCTCCTCCG
JMSF045E02+ CCTGTTGGGCTTTGGGCGAAAGGGGTCGCCGCCACTGCCTTTCTTCTTTCTCCTCCTCCG
____________________________________________________________
consensus CCTGTTGGGCTTTGGGCGAAAGGGGTCGCCGCCACTGCCTTTCTTCTTTCTCCTCCTCCG
. : . : . : . : . : . :
rJMSF045E02- GGTCCGGGGGGTTTGAGTTTGAGGAGGAGCGACATAAGGTACAATAGCAGTGCAGCTGGG
rJMSF026O20- GGTCCGGGGGGTTTGAGTTTGAGGAGGAGCGACATAAGGTACAATAGCAGTGCAGCTGGG
JMSF045E02+ GGTCCGGGGGGTTTGAGTTTGAGGAGGAGCGACATAAGGTACAATAGCAGTGCAGCTGGG
____________________________________________________________
consensus GGTCCGGGGGGTTTGAGTTTGAGGAGGAGCGACATAAGGTACAATAGCAGTGCAGCTGGG
. : . : . : . : . : . :
rJMSF045E02- ACTTTGGTGGTAAAGAACCCCGTTGAGAACCTCGGATCCCAGTTTCATGGACACCAAATA
rJMSF026O20- ACTTTGGTGGTAAAGAACCCCGTTGAGAACCTCGGATCCCAGTTTCATGGACACCAAATA
JMSF045E02+ ACTTTGGTGGTAAAGAACCCCGTTGAGAACCTCGGATCCCAGTTTCATGGACACCAAATA
____________________________________________________________
consensus ACTTTGGTGGTAAAGAACCCCGTTGAGAACCTCGGATCCCAGTTTCATGGACACCAAATA
. : . : . : . : . : . :
rJMSF045E02- ACCACACTCGAATTTCCCATCAATGGTTCCGGTAGCTTGAAAACAAGAATTATGATCAAG
rJMSF026O20- ACCACACTCGAATTTCCCATCAATGGTTCCGGTAGCTTGAAAACAAGAATTATGATCAAG
JMSF045E02+ ACCACACTCGAATTTCCCATCAATGGTTCCGGTAGCTTGAAAACAAGAATTATGATCAAG
____________________________________________________________
consensus ACCACACTCGAATTTCCCATCAATGGTTCCGGTAGCTTGAAAACAAGAATTATGATCAAG
. : . : . : . : . : . :
rJMSF045E02- TAATAAGCCCTCCTGAAGCCTGAAAAAATAAAGCTGCTCGAATCGAAACAGCAAGCTGAA
rJMSF026O20- TAATAAGCCCTCCTGAAGCCTGAAAAAATAAAGCTGCTCGAATCGAAACAGCAAGCTGAA
JMSF045E02+ TAATAAGCCCTCCTGAAGCCTGAAAAAATAAAGCTGCTCGAATCGAAACAGCAAGCTGAA
____________________________________________________________
consensus TAATAAGCCCTCCTGAAGCCTGAAAAAATAAAGCTGCTCGAATCGAAACAGCAAGCTGAA
. : . : . : . : . : . :
rJMSF045E02- GTAGTGTTTCCTCAGTGCGTANGAAGCGCTTGTCGTGGTGGGGAGAAAACTGGAATACTC
rJMSF026O20- GTAGTGTTTCCTCAGTGCGTAGGAAGCGCTTGTCGTGGT-GGGAGAAAACTGGAATACTC
JMSF045E02+ GTAGTGTTTCCTCAGTGCGTAGGAAGCGCTTGTCGTGGT-GGGAGAAAACTGGAATACTC
____________________________________________________________
consensus GTAGTGTTTCCTCAGTGCGTAGGAAGCGCTTGTCGTGGT-GGGAGAAAACTGGAATACTC
. : . : . : . : . : . :
rJMSF045E02- CGCTCACCTCCCTCCACTTCTTCTCCGACACCACCT
rJMSF026O20- CGCTCACCTCCCTCCACTTCTTCTCCGACACCACCT
JMSF045E02+ CGCTCACCTCCCTCCACTTCTTCTCCGACACCACCTGATTGTAGCCGCCTCTTCTGGTAA
JMSF026O20+ CACCTGATTGTAGCCGCCTCTTCTGGTAA
____________________________________________________________
consensus CGCTCACCTCCCTCCACTTCTTCTCCGACACCACCTGATTGTAGCCGCCTCTTCTGGTAA
. : . : . : . : . : . :
JMSF045E02+ CCTCCACGTATAGAACGTGTAAATCAAGCTCTTTCCCTCCAATGATAGGGACCATACACT
JMSF026O20+ CCTCCACGTATAGAACGTGTAAATCAAGCTCTTTCCCTCCAATGATAGGGACCATACACT
JMSF014J09+ CATACACT
____________________________________________________________
consensus CCTCCACGTATAGAACGTGTAAATCAAGCTCTTTCCCTCCAATGATAGGGACCATACACT
. : . : . : . : . : . :
JMSF045E02+ TGGTCCCCATCACACCGTGAAAGCCCTTGAGAGTTTCCCAGAAAAGAGTGGAGTCCTTGA
JMSF026O20+ TGGTCCCCATCACACCGTGAAAGCCCTTGAGAGTTTCCCAGAAAAGAGTGGAGTCCTTGA
JMSF014J09+ TGGTCCCCATCACACCGTGAAAGCCCTTGAGAGTTTCCCAGAAAAGAGTGGAGTCCTTGA
____________________________________________________________
consensus TGGTCCCCATCACACCGTGAAAGCCCTTGAGAGTTTCCCAGAAAAGAGTGGAGTCCTTGA
. : . : . : . : . : . :
JMSF045E02+ CGACGTCGTCATGGGATGCCAATGGCGAAGGGAGTGTATTGGTACCGTCCATTCCGCAGC
JMSF026O20+ CGACGTCGTCATGGGATGCCAATGGCGAAGGGAGTGTATTGGTACCGTCCATTCCGCAGC
JMSF014J09+ CGACGTCGTCATGGGATGCCAATGGCGAAGGGAGTGTATTGGTACCGTCCATTCCGCAGC
JMSF028O20+ TCATGGGATGCCANTGGCGAAGNGAGTGTATTGGTACCGTCCATTCCGCAGC
____________________________________________________________
consensus CGACGTCGTCATGGGATGCCAATGGCGAAGGGAGTGTATTGGTACCGTCCATTCCGCAGC
. : . : . : . : . : . :
JMSF045E02+ GCAGCCGGTCTCGGCGTCGGAAAATATATAAATAAAGAAACGACAAGCTAAGAGATAGAT
JMSF026O20+ GCAGCCGGTCTCGGCGTCGGAAAATATATAAATAAAGAAACGACAAGCTAAGAGATAGAT
JMSF014J09+ GCAGCCGGTCTCGGCGTCGGAAAATATATAAATAAAGAAACGACAAGCTAAGAGATAGAT
JMSF028O20+ GCAGCCGGTCTCGGCGTCNGAAAATATATAAATAAAGAAACGACAAGNTAAGAGATAGAT
____________________________________________________________
consensus GCAGCCGGTCTCGGCGTCGGAAAATATATAAATAAAGAAACGACAAGCTAAGAGATAGAT
. : . : . : . : . : . :
JMSF045E02+ A
JMSF026O20+ ATAAATGAATTGAAGAGGCCTGCGGGCCTTAATTGCCTCCGGGATGTAAGTAATGAGAGG
JMSF014J09+ ATAAATGAATTGAAGAGGCCTGCGGGCCTTAATTGCCTCCGGGATGTAAGTAATGAGAGG
JMSF028O20+ ATAAATGAANTGAAGAGGCCTGCGGCCCTTAATTGCCTCCGNGATGTAAGTAANGAGAGG
____________________________________________________________
consensus ATAAATGAATTGAAGAGGCCTGCGGGCCTTAATTGCCTCCGGGATGTAAGTAATGAGAGG
. : . : . : . : . : . :
JMSF026O20+ AGAGGCCGAGAGGGAGATAGATAGACAGATATATAGATAATTCCAAGATAGG
JMSF014J09+ AGAGGCCGAGAGGGAGATAGATAGACAGATATATAGATAATTCCAAGATAGG
JMSF028O20+ AGAGTCCGAGAGGGNGATAGATAGACAGATATATAGATAATTCCAAGATAGGTGTAGNCC
____________________________________________________________
consensus AGAGGCCGAGAGGGAGATAGATAGACAGATATATAGATAATTCCAAGATAGGTGTAGNCC