Contig 002292:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034M11Sequence491002292 (5)gb|AAV88066.1|3e-07NBS-LRR protein [Ipomoea batatas]734005465 (4)
JMFS023F02Sequence604002292 (5)gb|AAV88066.1|6e-05NBS-LRR protein [Ipomoea batatas]
JMSF021P15Sequence685002292 (5)720005465 (4)
JMSF022K13Sequence671002292 (5)gb|AAV88066.1|6e-07NBS-LRR protein [Ipomoea batatas]741005465 (4)ref|XP_011091063.1|5e-06PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indi
JMSF028O10Sequence625002292 (5)gb|AAV88066.1|4e-06NBS-LRR protein [Ipomoea batatas]615005465 (4)ref|XP_006366838.1|1e-20PREDICTED: putative late blight resistance protein homolog R1B-16-like [Solanum

Alignment

This contig is upended


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JMSF021P15+                          AATGGAGACAATTTCTCGTTGCCNTGATGAATGCTGAATTAGCAT
                      ____________________________________________________________
consensus                            AATGGAGACAATTTCTCGTTGCCNTGATGAATGCTGAATTAGCAT
 
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JMSF021P15+           CGCCTTTACAATCTGGAACTCGTTGTTTTTCCCCACCATTATGCTGCCCTGCTGGGGCTG
                      ____________________________________________________________
consensus             CGCCTTTACAATCTGGAACTCGTTGTTTTTCCCCACCATTATGCTGCCCTGCTGGGGCTG
 
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JMSF021P15+           GGAGTGTGAAGCGTGTTGGCGGTGGGAGGAAGCTGCGGCTGCGGCAAGTACTGTAGTTGT
                      ____________________________________________________________
consensus             GGAGTGTGAAGCGTGTTGGCGGTGGGAGGAAGCTGCGGCTGCGGCAAGTACTGTAGTTGT
 
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JMSF021P15+           TGTTTTCCTTCCAATTCCAATTCCTTGCAAGGCGGCTGCGACACACTCCATCTTCTCTTT
                      ____________________________________________________________
consensus             TGTTTTCCTTCCAATTCCAATTCCTTGCAAGGCGGCTGCGACACACTCCATCTTCTCTTT
 
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JMSF021P15+           GGACAAGTCTTTGTGGATGGCATCAATGTCTCTTATTGCTCCTTCCAAAATACAACCAAG
JMSF028O10+                                               TGCTCCTTTCAAAATACAACCAAG
                      ____________________________________________________________
consensus             GGACAAGTCTTTGTGGATGGCATCAATGTCTCTTATTGCTCCTTTCAAAATACAACCAAG
 
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JMSF021P15+           TTTCAAAGAATGCGAAGTTTCTCCTGCTTGTGGTTTTTCCACAAAAAGATCTGCAGCAAT
JMFF034M11+                          AGTTTCTCCTGCTTGTGGTTTTTCCACAAAAAGATCTGCAGCAAT
JMSF022K13+                          AGTTTCTCCTGCTTGTGGTTTTTCCACAAAAAGATCTGCAGCAAT
JMFS023F02+                          AGTTTCTCCTGATTGTGGTTTTTCCACAAAAAGATCTGCAGCAAT
JMSF028O10+           TTTCAAAGAATGCGAAGTTTCTCCTGCTTGTGGTTTTTCCACAAAAAGATTTGCAGCAAT
                      ____________________________________________________________
consensus             TTTCAAAGAATGCGAAGTTTCTCCTGCTTGTGGTTTTTCCACAAAAAGATCTGCAGCAAT
 
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JMSF021P15+           TCCCAAGTCTTCTTC---TTCTGCATCAATAGTCCTTTGTGGTTTTTCTCCAAAAAGACC
JMFF034M11+           TCCCAAGTCTTCTTC---TTCTGCATCAATAGTCCTTTGTGGTTTTTCTCCAAAAAGACC
JMSF022K13+           TCCCAAGTCTTCTTC---TTCTGCATCAATAGTCCTTTGTGGTTTTTCTCCAAAAAGACC
JMFS023F02+           TCCCAAGTCTTCTTC------TGCGTCAATAGTCCTCTGGGGGTTTTCCAAAAAAAGACC
JMSF028O10+           TTCCAAGTCGTCTTCNTCTTNTGCATCATTAGTCCTCTGTGGGTTTTCCCCAAAAAGACC
                      ____________________________________________________________
consensus             TCCCAAGTCTTCTTC---TTCTGCATCAATAGTCCTTTGTGGTTTTTCTCCAAAAAGACC
 
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JMSF021P15+           TGCTATTGCTGCTAATAACTCTCCCTCTTCCTCTTCCTCATAAAGATGTAGGATTTGGAA
JMFF034M11+           TGCTATTGCTGCTAATAACTCTCCCTCTTCCTCTTCCTCATAAAGATGTAGGATTTGGAA
JMSF022K13+           TGCTATTGCTGCTAATAACTCTCCCTCTTCCTCTTCCTCATAAAGATGTAGGATTTGGAA
JMFS023F02+           TGCTATTCCTGCAAGTAACTCTTCCATTTCCTCTATCTCATAAAGATGTACGATTTGGAA
JMSF028O10+           TGCTATTGCTGCTAATAACTCTTCCTCTTCCTCTTCCTCATAAAGATGTACGATTTGGAA
                      ____________________________________________________________
consensus             TGCTATTGCTGCTAATAACTCTCCCTCTTCCTCTTCCTCATAAAGATGTAGGATTTGGAA
 
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JMSF021P15+           TTCAATTTCGTCTTCCACTCGGAAAGCCACATCTCTGAGCTTAGTTTCCAAGTGTTTAAT
JMFF034M11+           TTCAATTTCGTCTTCCACTCGGAAAGCCACATCTCTGAGCTTAGTTTCCAAGTGTTTAAT
JMSF022K13+           TTCAATTTCGTCTTCCACTCGGAAAGCCACATCTCTGAGCTTAGTTTCCAAGTGTTTAAT
JMFS023F02+           TTCAATTTCATCTTCTACTCTGAAAGCCACGTCTCTGAGCTTAGTTTCCAAGTCTTTAAT
JMSF028O10+           TTCAATTTCATCTTCCACTCTGAAAGCCACATCTCTGAGCTTAGTTTCCAAGTCTTTAAT
                      ____________________________________________________________
consensus             TTCAATTTCGTCTTCCACTCGGAAAGCCACATCTCTGAGCTTAGTTTCCAAGTGTTTAAT
 
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JMSF021P15+           AGCTTGGATATCATCCATCCTGTTCTCATCGAACAGATCTATGAGATCACCAAGCTTCTG
JMFF034M11+           AGCTTGGATATCATCCATCCTGTTCTCATCGAACAGATCTATGAGATCACCAAGCTTCTG
JMSF022K13+           AGCTTGGATATCATCCATCCTGTTCTCATCGAACAGATCTATGAGATCACCAAGCTTCTG
JMFS023F02+           AGCTTGGATACCATCCATCCTGTTCTCATCGAACAGCTCTATCAGATCACCAAGTTTCTG
JMSF028O10+           AGCTTGGATACCATCCATCCGGTTCTCATCGAACACCTCTATCAGATCACCAAGCTTCTG
                      ____________________________________________________________
consensus             AGCTTGGATATCATCCATCCTGTTCTCATCGAACAGATCTATGAGATCACCAAGCTTCTG
 
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JMSF021P15+           GTGGAGATTTTGGATCAAGTTTTCATTGGCAGGGATGAGTTGGCTTTGTCGTACGATTGG
JMFF034M11+           GTGGAGATTTTGGATCAAGTTTTCATTGGCAGGGATGAGTTGGCTTTGTCGTACGATTGG
JMSF022K13+           GTGGAGATTTTGGATCAAGTTTTCATTGGCAGGGATGAGTTGGCTTTGTCGTACGATTGG
JMFS023F02+           GTGGAGGTTTTGGATCAAGTTTTTATTGGCAGGGATGAGTTGCTTTTGTCGTACGATTGG
JMSF028O10+           ATGGAGATTTTGGATAAACTTTTCATTGCCAGGGATGAGCTGCTTTCGTCGTACGATTGG
                      ____________________________________________________________
consensus             GTGGAGATTTTGGATCAAGTTTTCATTGGCAGGGATGAGTTGGCTTTGTCGTACGATTGG
 
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JMSF021P15+           GCGAGGCAGAGGTTGCAAGAACTCAAGCTCAATCGTCCTCAC                  
JMFF034M11+           GCGAGGCAGAGGTTGCAAGAACTCAAGCTCAATCGTCCTCACAAGAGAATTTACAGCAAC
JMSF022K13+           GCGAGGCAGAGGTTGCAAGAACTCAAGCTCAATCGTCCTCACAAGAGAATTTACAGCAAC
JMFS023F02+           GCGAGGCAGAGGTTGCAACAACTCAAGCTCAATCGTCCTCACAAGAGAATTTACAGCAAC
JMSF028O10+           GCGAGGCAGAGGTTGCAAGAACTCAAGCTCAATGGTCCTCACAAGAGAATTAACAGCAAC
                      ____________________________________________________________
consensus             GCGAGGCAGAGGTTGCAAGAACTCAAGCTCAATCGTCCTCACAAGAGAATTTACAGCAAC
 
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JMFF034M11+           ACAAGCCAT                                                   
JMSF022K13+           ACAAGCCAT                                                   
JMFS023F02+           ACAAGCCATTCTTCAATTC                                         
JMSF028O10+           ACAAGCCATTCTACAATTCTCGACCACTTAGTATGTATGTATGTATGTAGTGCGTATAGT
                      ____________________________________________________________
consensus             ACAAGCCATTCTTCAATTCTCGACCACTTAGTATGTATGTATGTATGTAGTGCGTATAGT
 
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JMSF028O10+           AATGTAATGTGATGTTTGGGTGAAGAATTGAAGCTTAATCAGCAGAACAAGAAGTAGCAA
                      ____________________________________________________________
consensus             AATGTAATGTGATGTTTGGGTGAAGAATTGAAGCTTAATCAGCAGAACAAGAAGTAGCAA
 
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JMSF028O10+           TTGCTGTGTAGCTCTGCTCAGNGGAAATGCAATAATCGGAAGACTTTTCTGATAGACTCC
                      ____________________________________________________________
consensus             TTGCTGTGTAGCTCTGCTCAGNGGAAATGCAATAATCGGAAGACTTTTCTGATAGACTCC