Contig 002291:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026D21Sequence568002291 (7)ref|XP_009776723.1|2e-72PREDICTED: probable ribosome-binding factor A, chloroplastic [Nicotiana sylvest658002291 (7)ref|XP_011088536.1|5e-80PREDICTED: probable ribosome-binding factor A, chloroplastic [Sesamum indicum]
JMFN017G07Sequence612002291 (7)ref|XP_009776723.1|1e-70PREDICTED: probable ribosome-binding factor A, chloroplastic [Nicotiana sylvest
JMSF028L03Sequence646002291 (7)ref|XP_009776723.1|1e-74PREDICTED: probable ribosome-binding factor A, chloroplastic [Nicotiana sylvest648002291 (7)ref|XP_011088536.1|8e-81PREDICTED: probable ribosome-binding factor A, chloroplastic [Sesamum indicum]
JMSF035K23Sequence690002291 (7)ref|XP_009776723.1|4e-83PREDICTED: probable ribosome-binding factor A, chloroplastic [Nicotiana sylvest659002291 (7)ref|XP_011088536.1|9e-81PREDICTED: probable ribosome-binding factor A, chloroplastic [Sesamum indicum]

Alignment

This contig is upended


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rJMSF035K23-            AAACTGGACAACTTGGTCTCAGTTGCAGCCTGGCAAATTTGAATTGTATTTCTCATAC
rJMSF028L03-                             CTCAGNTGCAGCCTGGCANATTTGAATTGGATTTCTCATAC
rJMFF026D21-                           GTCTCAGNTGCAGCCTGGCAAATTTGAATTGTATTTCTCATAC
                      ____________________________________________________________
consensus               AAACTGGACAACTTGGTCTCAGTTGCAGCCTGGCAAATTTGAATTGTATTTCTCATAC
 
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rJMSF035K23-          TTTCTGTCAGTTCTAAGAGCTTCAGCACACAACTATTCCACATAAAAAATCCCTTCATCA
rJMSF028L03-          TTTCTGTCAGNNCTAAGAGCTTCAGCACACAACTATNCCACATAAAAAATCCCTTCATCA
rJMFF026D21-          TTTCTGTCAGTTCTAAGAGCTTCAGCACACAACTATTCCACATAAAAAATCCCTTCATCA
                      ____________________________________________________________
consensus             TTTCTGTCAGTTCTAAGAGCTTCAGCACACAACTATTCCACATAAAAAATCCCTTCATCA
 
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rJMSF035K23-          TCAGGGTCCTCACCTTCCCAATCCTCATCATCCTCGCTCTGTTCAGATGACTCATTCTTG
rJMSF028L03-          TCAGGGTCCTCACCTTCCCAATCCTCATCATCCTCGCTCTGTTCAGATGACTCATTCTTG
rJMFF026D21-          TCAGGGTCCTCACCTTCCCAATCCTCATCATCCTCGCTCTGTTCAGATGACTCATTCTTG
                      ____________________________________________________________
consensus             TCAGGGTCCTCACCTTCCCAATCCTCATCATCCTCGCTCTGTTCAGATGACTCATTCTTG
 
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rJMSF035K23-          GCATTACCTTGAAGATCAGCTTCCTTTTTCTCGTTCTCGCGCTTTATTCTATCCAGTATA
rJMSF028L03-          GCATTACCTTGAAGATCAGCTTCCTTTTTCTCGTTCTCGCGCTTTATTCTATCCAGTATA
rJMFF026D21-          GCATTACCTTGAAGATCAGCTTCCTTTTTCTCGTTCTCGCGCTTTATTCTATCCAGTATA
JMSF035K23+                                         TCGTTCTCGCGCTTTATTCTATCCAGTATA
                      ____________________________________________________________
consensus             GCATTACCTTGAAGATCAGCTTCCTTTTTCTCGTTCTCGCGCTTTATTCTATCCAGTATA
 
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rJMSF035K23-          GCAATAACCCTGCTTCCTCTCTCAATAGACAGATCTTCAATAAATCGTATCTCTGGAGTA
rJMSF028L03-          GCAATAACCCTGCTTCCTCTCTCAATAGACAGATCTTCAATAAATCGTATCTCTGGAGTA
rJMFF026D21-          GCAATAACCCTGCTTCCTCTCTCAATANACAGATCTTCAATAAATCGTATCTCTGGAGTA
JMSF035K23+           GCAATAACCCTGCTTCCTCTCTCAATAGACAGATCTTCAATAAATCGTATCTCTGGAGTA
JMFN017G07+                                              TTCAATAAATCGTATCTCTGGAGTA
JMFF026D21+                               CTCAATAGACAGATCTNCAATAAATCGTATCTCTGGAGTA
JMSF028L03+                         TCCTCTCTCAATAGACAGATCTTCAATAAATCGTATCTCTGGAGTA
                      ____________________________________________________________
consensus             GCAATAACCCTGCTTCCTCTCTCAATAGACAGATCTTCAATAAATCGTATCTCTGGAGTA
 
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rJMSF035K23-          AGTCTCAACTTCATGCGCTTGCCCAGCTCGCTGCGTACATATTTTGCTTTTGACTTTAAT
rJMSF028L03-          AGTCTCAACTTCATGCGCTTGCCCAGCTCGCTGCGTACATATTTTGCTTTTGACTTTAAT
rJMFF026D21-          AGTCTCAACTTCATGCGCTTGCCCAGCTCGCTGCGTACATATTTTGCTTTTGACTTTAAT
JMSF035K23+           AGTCTCAACTTCATGCGCTTGCCCAGCTCGCTGCGTACATATTTTGCTTTTGACTTTAAT
JMFN017G07+           AGTCTCAACTTCATGCGCTTGCCCAGCTCGCTGCGTACATATTTTGCTTTTGACTTTAAT
JMFF026D21+           AGTCTCAACTTCATGCGCTTGCCCAGCTCGCTGCGTACATATTTTGCTTTTGACTTTAAT
JMSF028L03+           AGTCTCAACTTCATGCGCTTGCCCAGCTCGCTGCGTACATATTTTGCTTTTGACTTTAAT
                      ____________________________________________________________
consensus             AGTCTCAACTTCATGCGCTTGCCCAGCTCGCTGCGTACATATTTTGCTTTTGACTTTAAT
 
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rJMSF035K23-          CCTGCAATGGCCACTTCTTTTCCTCTTTTGTCCCCAAAAACAGAAACATAGACTTTAACA
rJMSF028L03-          CCTGCAATGGCCACTTCTTTTCCTCTTTTGTCCCCAAAAACAGAAACATAGACTTTAACA
rJMFF026D21-          CCTGCAATGGCCACTTCTTTTCCTCTTTTGTCCCCAAAAACAGAAACATAGACTTTAACA
JMSF035K23+           CCTGCAATGGCCACTTCTTTTCCTCTTTTGTCCCCAAAAACAGAAACATAGACTTTAACA
JMFN017G07+           CCTGCAATGGCCACTTCTTTTCCTCTTTTGTCCCCAAAAACAGAAACATAGACTTTAACA
JMFF026D21+           CCTGCAATGGCCACTTCTTTTCCTCTTTTGTCCCCAAAAACAGAAACATAGACTTTAACA
JMSF028L03+           CCTGCAATGGCCACTTCTTTTCCTCTTTTGTCCCCAAAAACAGAAACATAGACTTTAACA
                      ____________________________________________________________
consensus             CCTGCAATGGCCACTTCTTTTCCTCTTTTGTCCCCAAAAACAGAAACATAGACTTTAACA
 
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rJMSF035K23-          ACCTGCAAATCAGCAGAAACTTCAACGTCGCTGATAGTAGTAAGCGAGGAGAGGTACTGA
rJMSF028L03-          ACCTGCAAATCNGCAGAAACTTCAACGTCGCTGATAGTAGTAAGCGAGGAGAGGTACTGA
rJMFF026D21-          ACCTGCAAATCAGCAGAAACTTCAACGTCGCTGATAGTAGTAAGCGAGGAGAGGTACTGA
JMSF035K23+           ACCTGCAAATCAGCAGAAACTTCAACGTCGCTGATAGTAGTAAGCGAGGAGAGGTACTGA
JMFN017G07+           ACCTGCAAATCAGCAGAAACTTCAACGTCGCTGATAGTAGTAAGCGAGGAGAGGTACTGA
JMFF026D21+           ACCTGCAAATCAGCAGAAACTTCAACGTCGCTGATAGTAGTAAGCGAGGAGAGGTACTGA
JMSF028L03+           ACCTGCAAATCAGCAGAAACTTCAACGTCGCTGATAGTAGTAAGCGAGGAGAGGTACTGA
                      ____________________________________________________________
consensus             ACCTGCAAATCAGCAGAAACTTCAACGTCGCTGATAGTAGTAAGCGAGGAGAGGTACTGA
 
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rJMSF035K23-          TCAGCTCCGAGAGCGGCTTCCGGCAGTACAGCGTACTGTAAAACCTTATCCGTGAGCAGC
rJMSF028L03-          TCAGCTCCGAGAGCGGCTTCCGGCAGTACAGCGTACTGTAAAACCTTATCCGTGAGCAGC
rJMFF026D21-          TCAGCTCCGAGAGCGGCTTCCGGCAGTACAGCGTACTGTAAAACCTTATCCGTGAGCAGC
JMSF035K23+           TCAGCTCCGAGAGCGGCTTCCGGCAGTACAGCGTACTGTAAAACCTTATCCGTGAGCAGC
JMFN017G07+           TCAGCTCCGAGAGCGGCTTCCGGCAGTACAGCGTACTGTAAAACCTTATCCGTGAGCAGC
JMFF026D21+           TCAGCTCCGAGAGCGGCTTCCGGCAGTACAGCGTACTGTAAAACCTTATCCGTGAGCAGC
JMSF028L03+           TCAGCTCCGAGAGCGGCTTCCGGCAGTACAGCGTACTGTAAAACCTTATCCGTGAGCAGC
                      ____________________________________________________________
consensus             TCAGCTCCGAGAGCGGCTTCCGGCAGTACAGCGTACTGTAAAACCTTATCCGTGAGCAGC
 
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rJMSF035K23-          ATGTCGGAGAGCTCTCTCCTTATCTGCTTAGCCACCATTTTCACTCTCCGAGGATTGGCC
rJMSF028L03-          ATGTCGGAGAGCTCTCTCCTTATCTGCTTAGCCACCATTTTCACTCTCCGAGGATTGGCC
rJMFF026D21-          ATGTCGGAGAGCTCTCTCCTTATCTGCTTAGCCACCATTTTCACTCTCCGAGGATTGGCC
JMSF035K23+           ATGTCGGAGAGCTCTCTCCTTATCTGCTTAGCCACCATTTTCACTCTCCGAGGATTGGCC
JMFN017G07+           ATGTCGGAGAGCTCTCTCCTTATCTGCTTAGCCACCATTTTCACTCTCCGAGGATTGGCC
JMFF026D21+           ATGTCGGAGAGCTCTCTCCTTATCTGCTTAGCCACCATTTTCACTCTCCGAGGATTGGCC
JMSF028L03+           ATGTCGGAGAGCTCTCTCCTTATCTGCTTAGCCACCATTTTCACTCTCCGAGGATTGGCC
                      ____________________________________________________________
consensus             ATGTCGGAGAGCTCTCTCCTTATCTGCTTAGCCACCATTTTCACTCTCCGAGGATTGGCC
 
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rJMSF035K23-          ATGCATTTGACTAAACTACCCCTGCTGCCATGTCCGCCGCTGGAGGTGAATATCCGGCGC
rJMSF028L03-          ATGCATTTGACTAAACTACCCCTGCTGCCATGTCCGCCGCTGGAGGTGAATATNCGGCGC
rJMFF026D21-          ATGCATTTGACTAAACTACCCCTGCTGCCATGTCCGCCGCTGGAGGTGAATATCCGGCGC
JMSF035K23+           ATGCATTTGACTAAACTACCCCTGCTGCCATGTCCGCCGCTGGAGGTGAATATCCGGCGC
JMFN017G07+           ATGCATTTGACTAAACTACCCCTGCTGCCATGTCCGCCGCTGGAGGTGAATATCCGGCGC
JMFF026D21+           ATGCATTTGACTAAACTACCCCTGCTGCCATGTCCGCCGCTGGAGGTGAATATCCGGCGC
JMSF028L03+           ATGCATTTGACTAAACTACCCCTGCTGCCATGTCCGCCGCTGGAGGTGAATATCCGGCGC
                      ____________________________________________________________
consensus             ATGCATTTGACTAAACTACCCCTGCTGCCATGTCCGCCGCTGGAGGTGAATATCCGGCGC
 
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rJMSF035K23-          A                                                           
rJMSF028L03-          A                                                           
rJMFF026D21-          A                                                           
JMSF035K23+           AGGCGGAGAAGATTGGGCGGGGAAATCGACAGCGGAGGTGTGTTTGAGACTGTGATTGAA
JMFN017G07+           AGGCGGAGAAGATTGGGCGGGGAAATCGACAGCGGAGGTGTGTTTGAGACTGTGATTGAA
JMFF026D21+           AGGCGGAGAAGATTGGGCGGGGAAATCGACAGCGGAGGTGTGTTTGAGACTGTGATTGAA
JMSF028L03+           AGGCGGAGAAGATTGGGCGGGGAAATCGACAGCGGAGGTGTGTTTGAGACTGTGATTGAA
                      ____________________________________________________________
consensus             AGGCGGAGAAGATTGGGCGGGGAAATCGACAGCGGAGGTGTGTTTGAGACTGTGATTGAA
 
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JMSF035K23+           GATGAGCGTAGGTTAGGGAAAGGACGTAAGTGTGGATTTTGGATGAGAATATGCGGCATT
JMFN017G07+           GATGAGCGTAGGTTAGGGAAAGGACGTAAGTGTGGATTTTGGATGAGAATATGCGGCATT
JMFF026D21+           GATGAGCGTAGGTTAGGGAAAGGACGTAAGTGTGGATTTTGGATGAGAATATGCGGCATT
JMSF028L03+           GATGAGCGTAGGTTAGGGAAAGGACGTAAGTGTGGATTTTGGATGAGAATATGCGGCATT
                      ____________________________________________________________
consensus             GATGAGCGTAGGTTAGGGAAAGGACGTAAGTGTGGATTTTGGATGAGAATATGCGGCATT
 
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JMSF035K23+           ACAACGTCGTTTACTATTGTCTCCGATTATCTTCTCGCCGGCGCCGGTGAGGTATATGGA
JMFN017G07+           ACAACGTCGTTTACTATTGTCTCCGATTATCTTCTCGCCGGCGCCGGTGAGGTATATGGA
JMFF026D21+           ACAACGTCGTTTACTATTGTCTCCGATTATCTTCTCGCCGGCGCCGGT            
JMSF028L03+           ACAACGTCGTTTACTATTGTCTCCGATTATCTTCTCGCCGGCGCCGGTGAGGTATATGGA
                      ____________________________________________________________
consensus             ACAACGTCGTTTACTATTGTCTCCGATTATCTTCTCGCCGGCGCCGGTGAGGTATATGGA
 
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JMSF035K23+           GAGGAACGAGAAATTTTAGGATATCCGATGCCGATGTCGGAGGGTGTTTTTGGAAATA  
JMFN017G07+           GAGGAACGAGAAATTTTAGGATATCCGATGCCGATGTCGGAGGGTGT             
JMSF028L03+           GAGGAACGAGAAATTTTAGGATATCCGATGCCGATGTCGGAGGGTGTTTTTGGAAATACC
                      ____________________________________________________________
consensus             GAGGAACGAGAAATTTTAGGATATCCGATGCCGATGTCGGAGGGTGTTTTTGGAAATACC