Contig 002283:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016D06Sequence508002283 (5)784001365 (5)ref|XP_009621483.1|5e-68PREDICTED: transcription initiation factor TFIID subunit 12 isoform X2 [Nicotia
JMSF024B20Sequence660002283 (5)ref|XP_006341120.1|2e-08PREDICTED: transcription initiation factor TFIID subunit 12-like [Solanum tuber763001365 (5)ref|XP_009621483.1|1e-53PREDICTED: transcription initiation factor TFIID subunit 12 isoform X2 [Nicotia
JMSF027N15Sequence647002283 (5)ref|XP_006341120.1|2e-08PREDICTED: transcription initiation factor TFIID subunit 12-like [Solanum tuber730001365 (5)ref|XP_004246524.1|8e-58PREDICTED: transcription initiation factor TFIID subunit 12 [Solanum lycopersic
JMSF033G20Sequence659002283 (5)ref|XP_006341120.1|2e-08PREDICTED: transcription initiation factor TFIID subunit 12-like [Solanum tuber736001365 (5)ref|XP_009621483.1|9e-58PREDICTED: transcription initiation factor TFIID subunit 12 isoform X2 [Nicotia
JMSF034G20Sequence515002283 (5)694001365 (5)ref|XP_009621483.1|9e-52PREDICTED: transcription initiation factor TFIID subunit 12 isoform X2 [Nicotia

Alignment

This contig is upended


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JMSF024B20+                                                                      C
                      ____________________________________________________________
consensus                                                                        C
 
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JMSF024B20+           ACTCTGCTGTCTAATTGATGATGTCGTAATAGATCTCACTGGCTGAGGAGGAACCCCAGC
JMSF033G20+           ACTCTGCTGTCTAATTGATGATGTCGTAATAGATCTCACTGGCTGAGGAGGAACCCCAGC
JMSF027N15+                    TCTAATTGATGATGTCGTAATAGATCTCACTGGCTGAGGAGGAACCCCAGC
                      ____________________________________________________________
consensus             ACTCTGCTGTCTAATTGATGATGTCGTAATAGATCTCACTGGCTGAGGAGGAACCCCAGC
 
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JMSF024B20+           TGGTCGCATTGGCATACTCGAACCAAGCGACCCTGTAATTCCAATCCCTTGCATTCCTTG
JMSF033G20+           TGGTCGCATTGGCATACTCGAACCAAGCGACCCTGTAATTCCAATCCCTTGCATTCCTTG
JMSF027N15+           TGGTCGCATTGGCATACTCGAACCAAGCGACCCTGTAATTCCAATCCCTTGCATTCCTTG
                      ____________________________________________________________
consensus             TGGTCGCATTGGCATACTCGAACCAAGCGACCCTGTAATTCCAATCCCTTGCATTCCTTG
 
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JMSF024B20+           TACAGGTCTCCCCTGGGCTGAACTCGAACTAGGCAGAGAATCAGGCACACCGCGACCCAA
JMSF016D06+                                          GGCAGAGANTCAGGCACACCGCGACCCAA
JMSF034G20+                                    GAACTAGGCAGAGAATCAGGCACACCGCGACCCAA
JMSF033G20+           TACAGGTCTCCCCTGGGCTGAACTCGAACTAGGCAGAGAATCAGGCACACCGCGACCCAA
JMSF027N15+           TACAGGTCTCCCCTGGGCTGAACTCGAACTAGGCAGAGAATCAGGCACACCGCGACCCAA
                      ____________________________________________________________
consensus             TACAGGTCTCCCCTGGGCTGAACTCGAACTAGGCAGAGAATCAGGCACACCGCGACCCAA
 
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JMSF024B20+           CCCACCAAATTGCTGCCCAAAAGAAGGCGGAGCCAATGATGAAAAGGAGGCAGGCGGCGG
JMSF016D06+           CCCACCAAATTGCTGCCCAAAAGAAGGCGGAGCCAATGATGAAAAGGAGGCAGGCGGCGG
JMSF034G20+           CCCACCAAATTNCTGCCCAAAAGAAGNCGNNNCCAATGATGAAAAGGACGCAGGCGGCGG
JMSF033G20+           CCCACCAAATTGCTGCCCAAAAGAAGGCGGAGCCAATGATGAAAAGGAGGCAGGCGGCGG
JMSF027N15+           CCCACCAAATTGCTGCCCAAAAGAAGGCGGAGCCAATGATGAAAAGGAGGCAGGCGGCGG
                      ____________________________________________________________
consensus             CCCACCAAATTGCTGCCCAAAAGAAGGCGGAGCCAATGATGAAAAGGAGGCAGGCGGCGG
 
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JMSF024B20+           AGAAGGGCCAGGCTGGTGGGCAGGGACCCCAATTGCCAACCCACCTCTAGCAGGCGGCGG
JMSF016D06+           AGAAGGGCCAGGCTGGTGGGCAGGGACCCCAATTGCCAACCCACCTCTAGCAGGCGGCGG
JMSF034G20+           AGAAGNTCCAGGCTGGTGGGCAGGGACCCCAATTGCCAACCCACCTCTAGCAGNCGGCGG
JMSF033G20+           AGAAGGGCCAGGCTGGTGGGCAGGGACCCCAATTGCCAACCCACCTCTAGCAGGCGGCGG
JMSF027N15+           AGAAGGGCCAGGCTGGTGGGCAGGGACCCCAATTGCCAACCCACCTCTAGCAGGCGGCGG
                      ____________________________________________________________
consensus             AGAAGGGCCAGGCTGGTGGGCAGGGACCCCAATTGCCAACCCACCTCTAGCAGGCGGCGG
 
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JMSF024B20+           CACGGTTAGCGAAGAAGGAGGATGAGTCAAGTGCTGGAAAGGCGAGGGTTGTTGGCGGGA
JMSF016D06+           CACGGTTAGCGAAGAAGGAGGATGAGTCAAGTGCTGGAAAGGCGAGGGTTGTTGGCGGGA
JMSF034G20+           CACNGTTAGCGAAGAAGGAGGATGAGTCAAGTGCTGNAAAGNCNAGGGTTNTTGGCGGGA
JMSF033G20+           CACGGTTAGCGAAGAAGGAGGATGAGTCAAGTGCTGGAAAGGCGAGGGTTGTTGGCGGGA
JMSF027N15+           CACGGTTAGCGAAGAAGGAGGATGAGTCAAGTGCTGGAAAGGCGAGG---GTTGGCGGGA
                      ____________________________________________________________
consensus             CACGGTTAGCGAAGAAGGAGGATGAGTCAAGTGCTGGAAAGGCGAGGGTTGTTGGCGGGA
 
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JMSF024B20+           GCTAGCGAAAGAGGACGGGGGCTCTGAA-GCTGGCCTTGATTGAGGGTTTTGCGAGGCTG
JMSF016D06+           GCTAGCGAAAGAGGACGGGGGCTCTGAA-GCTGGCCTTGATTGAGGGTTTTGCGAGGCTG
JMSF034G20+           GCTAGCGAAAGAGGACGGGGGCTCTGAATGCTGCCCTNNATTGAGGGTTTTCCGAGGCTG
JMSF033G20+           GCTAGCGAAAGAGGACGGGGGCTCTGAA-GCTGGCCTTGATTGAGGGTTTTGCGAGGCTG
JMSF027N15+           GCTAGCGAAAGAGGACGGGGGCTCTGAA-GCTGGCCTTGATTGAGGGTTTTGCGAGGCTG
                      ____________________________________________________________
consensus             GCTAGCGAAAGAGGACGGGGGCTCTGAA-GCTGGCCTTGATTGAGGGTTTTGCGAGGCTG
 
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JMSF024B20+           GGGTCACGGATGTAGAAGCAGAGGGGTTTAGGGTTGGTTTCGTAGAAGATGCTGGCGTCG
JMSF016D06+           GGGTCACGGATGTAGAAGCAGAGGGGTTTAGGGTTGGTTTCGTAGAAGATGCTGGCGTCG
JMSF034G20+           GGGTCANGGATGTAGAAGCAGAGGGGTTTAGGGTTGGTTTCGTAGAAGATNCTGGCTTCG
JMSF033G20+           GGGTCACGGATGTAGAAGCAGAGGGGTTTAGGGTTGGTTTCGTAGAAGATGCTGGCGTCG
JMSF027N15+           GGGTCACGGATGTAGAAGCAGAGGGGTTTAGGGTTGGTTTCGTAGAAGATGCTGGCGTCG
                      ____________________________________________________________
consensus             GGGTCACGGATGTAGAAGCAGAGGGGTTTAGGGTTGGTTTCGTAGAAGATGCTGGCGTCG
 
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JMSF024B20+           AAGGAGGAGGGAGTGAGGAAGTAAGGGATGGTGCTGAGGAGGTAGATGCGGCAGAAGGTG
JMSF016D06+           AAGGAGGAGGGAGTGAGGAAGTAAGGGATGGTGCTGAGGAGGTAGATGCGGCAGAAGGTG
JMSF034G20+           AAGGAGGAGGGAGTGAGGAANTAAGGGATGGTGCTGAGGAGNTAGATGCGGCAGAAGGTG
JMSF033G20+           AAGGAGGAGGGAGTGAGGAAGTAAGGGATGGTGCTGAGGAGGTAGATGCGGCAGAAGGTG
JMSF027N15+           AAGGAGGAGGGAGTGAGGAAGTAAGGGATGGTGCTGAGGAGGTAGATGCGGCAGAAGGTG
                      ____________________________________________________________
consensus             AAGGAGGAGGGAGTGAGGAAGTAAGGGATGGTGCTGAGGAGGTAGATGCGGCAGAAGGTG
 
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JMSF024B20+           AAGGAGTAGGTGTTAGTGATGGAGGTGGCGGTTGTTGTTGCGGCGGTGACGACCGTTCGC
JMSF016D06+           AAGGAGTAGGTGTTAGTGATGGAGGTGGCGGTTGTTGTTGCGGCGGTGACGACCGTTCGC
JMSF034G20+           AAGGAGTAGGTGTTAGTGATGGAGGTGGCGGTTGTTGTTGCGGCGGTGACGACCGTTCGC
JMSF033G20+           AAGGAGTAGGTGTTAGTGATGGAGGTGGCGGTTGTTGTTGCGGCGGTGACGACCGTTCGC
JMSF027N15+           AAGGAGTAGGTGTTAGTGATGGAGGTGGCGGTTGTTGTTGCGGCGGTGACGACCGTTCGC
                      ____________________________________________________________
consensus             AAGGAGTAGGTGTTAGTGATGGAGGTGGCGGTTGTTGTTGCGGCGGTGACGACCGTTCGC
 
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JMSF024B20+           TTGGCGGCGGCGGTTGTTGCTCCATTGAAGTAAATTGGACTGCAAATCAGTAATACGGTC
JMSF016D06+           TTGGCGGCGGCGGTTGTTGCTCCATTGAAGTAAATTGGACTGCAAATCAGTAATACG   
JMSF034G20+           TNGGCGNCGGCGNTTGTTGCTCCATTGAAGTAANTTGGACTGCAAATCANTAATNCGGTC
JMSF033G20+           TTGGCGGCGGCGGTTGTTGCTCCATTGAAGTAAATTGGACTGCAAATCAGTAATACGGTC
JMSF027N15+           TTGGCGGCGGCGGTTGTTGCTCCATTGAAGTAAATTGGACTGCAAATCAGTAATACGGTC
                      ____________________________________________________________
consensus             TTGGCGGCGGCGGTTGTTGCTCCATTGAAGTAAATTGGACTGCAAATCAGTAATACGGTC