Contig 002283:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016D06Sequence508002283 (5)784001365 (5)ref|XP_009621483.1|5e-68PREDICTED: transcription initiation factor TFIID subunit 12 isoform X2 [Nicotia
JMSF024B20Sequence660002283 (5)ref|XP_006341120.1|2e-08PREDICTED: transcription initiation factor TFIID subunit 12-like [Solanum tuber763001365 (5)ref|XP_009621483.1|1e-53PREDICTED: transcription initiation factor TFIID subunit 12 isoform X2 [Nicotia
JMSF027N15Sequence647002283 (5)ref|XP_006341120.1|2e-08PREDICTED: transcription initiation factor TFIID subunit 12-like [Solanum tuber730001365 (5)ref|XP_004246524.1|8e-58PREDICTED: transcription initiation factor TFIID subunit 12 [Solanum lycopersic
JMSF033G20Sequence659002283 (5)ref|XP_006341120.1|2e-08PREDICTED: transcription initiation factor TFIID subunit 12-like [Solanum tuber736001365 (5)ref|XP_009621483.1|9e-58PREDICTED: transcription initiation factor TFIID subunit 12 isoform X2 [Nicotia
JMSF034G20Sequence515002283 (5)694001365 (5)ref|XP_009621483.1|9e-52PREDICTED: transcription initiation factor TFIID subunit 12 isoform X2 [Nicotia

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF024B20+ C
                      ____________________________________________________________
consensus C
 
. : . : . : . : . : . :
JMSF024B20+ ACTCTGCTGTCTAATTGATGATGTCGTAATAGATCTCACTGGCTGAGGAGGAACCCCAGC
JMSF033G20+ ACTCTGCTGTCTAATTGATGATGTCGTAATAGATCTCACTGGCTGAGGAGGAACCCCAGC
JMSF027N15+ TCTAATTGATGATGTCGTAATAGATCTCACTGGCTGAGGAGGAACCCCAGC
                      ____________________________________________________________
consensus ACTCTGCTGTCTAATTGATGATGTCGTAATAGATCTCACTGGCTGAGGAGGAACCCCAGC
 
. : . : . : . : . : . :
JMSF024B20+ TGGTCGCATTGGCATACTCGAACCAAGCGACCCTGTAATTCCAATCCCTTGCATTCCTTG
JMSF033G20+ TGGTCGCATTGGCATACTCGAACCAAGCGACCCTGTAATTCCAATCCCTTGCATTCCTTG
JMSF027N15+ TGGTCGCATTGGCATACTCGAACCAAGCGACCCTGTAATTCCAATCCCTTGCATTCCTTG
                      ____________________________________________________________
consensus TGGTCGCATTGGCATACTCGAACCAAGCGACCCTGTAATTCCAATCCCTTGCATTCCTTG
 
. : . : . : . : . : . :
JMSF024B20+ TACAGGTCTCCCCTGGGCTGAACTCGAACTAGGCAGAGAATCAGGCACACCGCGACCCAA
JMSF016D06+ GGCAGAGANTCAGGCACACCGCGACCCAA
JMSF034G20+ GAACTAGGCAGAGAATCAGGCACACCGCGACCCAA
JMSF033G20+ TACAGGTCTCCCCTGGGCTGAACTCGAACTAGGCAGAGAATCAGGCACACCGCGACCCAA
JMSF027N15+ TACAGGTCTCCCCTGGGCTGAACTCGAACTAGGCAGAGAATCAGGCACACCGCGACCCAA
                      ____________________________________________________________
consensus TACAGGTCTCCCCTGGGCTGAACTCGAACTAGGCAGAGAATCAGGCACACCGCGACCCAA
 
. : . : . : . : . : . :
JMSF024B20+ CCCACCAAATTGCTGCCCAAAAGAAGGCGGAGCCAATGATGAAAAGGAGGCAGGCGGCGG
JMSF016D06+ CCCACCAAATTGCTGCCCAAAAGAAGGCGGAGCCAATGATGAAAAGGAGGCAGGCGGCGG
JMSF034G20+ CCCACCAAATTNCTGCCCAAAAGAAGNCGNNNCCAATGATGAAAAGGACGCAGGCGGCGG
JMSF033G20+ CCCACCAAATTGCTGCCCAAAAGAAGGCGGAGCCAATGATGAAAAGGAGGCAGGCGGCGG
JMSF027N15+ CCCACCAAATTGCTGCCCAAAAGAAGGCGGAGCCAATGATGAAAAGGAGGCAGGCGGCGG
                      ____________________________________________________________
consensus CCCACCAAATTGCTGCCCAAAAGAAGGCGGAGCCAATGATGAAAAGGAGGCAGGCGGCGG
 
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JMSF024B20+ AGAAGGGCCAGGCTGGTGGGCAGGGACCCCAATTGCCAACCCACCTCTAGCAGGCGGCGG
JMSF016D06+ AGAAGGGCCAGGCTGGTGGGCAGGGACCCCAATTGCCAACCCACCTCTAGCAGGCGGCGG
JMSF034G20+ AGAAGNTCCAGGCTGGTGGGCAGGGACCCCAATTGCCAACCCACCTCTAGCAGNCGGCGG
JMSF033G20+ AGAAGGGCCAGGCTGGTGGGCAGGGACCCCAATTGCCAACCCACCTCTAGCAGGCGGCGG
JMSF027N15+ AGAAGGGCCAGGCTGGTGGGCAGGGACCCCAATTGCCAACCCACCTCTAGCAGGCGGCGG
                      ____________________________________________________________
consensus AGAAGGGCCAGGCTGGTGGGCAGGGACCCCAATTGCCAACCCACCTCTAGCAGGCGGCGG
 
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JMSF024B20+ CACGGTTAGCGAAGAAGGAGGATGAGTCAAGTGCTGGAAAGGCGAGGGTTGTTGGCGGGA
JMSF016D06+ CACGGTTAGCGAAGAAGGAGGATGAGTCAAGTGCTGGAAAGGCGAGGGTTGTTGGCGGGA
JMSF034G20+ CACNGTTAGCGAAGAAGGAGGATGAGTCAAGTGCTGNAAAGNCNAGGGTTNTTGGCGGGA
JMSF033G20+ CACGGTTAGCGAAGAAGGAGGATGAGTCAAGTGCTGGAAAGGCGAGGGTTGTTGGCGGGA
JMSF027N15+ CACGGTTAGCGAAGAAGGAGGATGAGTCAAGTGCTGGAAAGGCGAGG---GTTGGCGGGA
                      ____________________________________________________________
consensus CACGGTTAGCGAAGAAGGAGGATGAGTCAAGTGCTGGAAAGGCGAGGGTTGTTGGCGGGA
 
. : . : . : . : . : . :
JMSF024B20+ GCTAGCGAAAGAGGACGGGGGCTCTGAA-GCTGGCCTTGATTGAGGGTTTTGCGAGGCTG
JMSF016D06+ GCTAGCGAAAGAGGACGGGGGCTCTGAA-GCTGGCCTTGATTGAGGGTTTTGCGAGGCTG
JMSF034G20+ GCTAGCGAAAGAGGACGGGGGCTCTGAATGCTGCCCTNNATTGAGGGTTTTCCGAGGCTG
JMSF033G20+ GCTAGCGAAAGAGGACGGGGGCTCTGAA-GCTGGCCTTGATTGAGGGTTTTGCGAGGCTG
JMSF027N15+ GCTAGCGAAAGAGGACGGGGGCTCTGAA-GCTGGCCTTGATTGAGGGTTTTGCGAGGCTG
                      ____________________________________________________________
consensus GCTAGCGAAAGAGGACGGGGGCTCTGAA-GCTGGCCTTGATTGAGGGTTTTGCGAGGCTG
 
. : . : . : . : . : . :
JMSF024B20+ GGGTCACGGATGTAGAAGCAGAGGGGTTTAGGGTTGGTTTCGTAGAAGATGCTGGCGTCG
JMSF016D06+ GGGTCACGGATGTAGAAGCAGAGGGGTTTAGGGTTGGTTTCGTAGAAGATGCTGGCGTCG
JMSF034G20+ GGGTCANGGATGTAGAAGCAGAGGGGTTTAGGGTTGGTTTCGTAGAAGATNCTGGCTTCG
JMSF033G20+ GGGTCACGGATGTAGAAGCAGAGGGGTTTAGGGTTGGTTTCGTAGAAGATGCTGGCGTCG
JMSF027N15+ GGGTCACGGATGTAGAAGCAGAGGGGTTTAGGGTTGGTTTCGTAGAAGATGCTGGCGTCG
                      ____________________________________________________________
consensus GGGTCACGGATGTAGAAGCAGAGGGGTTTAGGGTTGGTTTCGTAGAAGATGCTGGCGTCG
 
. : . : . : . : . : . :
JMSF024B20+ AAGGAGGAGGGAGTGAGGAAGTAAGGGATGGTGCTGAGGAGGTAGATGCGGCAGAAGGTG
JMSF016D06+ AAGGAGGAGGGAGTGAGGAAGTAAGGGATGGTGCTGAGGAGGTAGATGCGGCAGAAGGTG
JMSF034G20+ AAGGAGGAGGGAGTGAGGAANTAAGGGATGGTGCTGAGGAGNTAGATGCGGCAGAAGGTG
JMSF033G20+ AAGGAGGAGGGAGTGAGGAAGTAAGGGATGGTGCTGAGGAGGTAGATGCGGCAGAAGGTG
JMSF027N15+ AAGGAGGAGGGAGTGAGGAAGTAAGGGATGGTGCTGAGGAGGTAGATGCGGCAGAAGGTG
                      ____________________________________________________________
consensus AAGGAGGAGGGAGTGAGGAAGTAAGGGATGGTGCTGAGGAGGTAGATGCGGCAGAAGGTG
 
. : . : . : . : . : . :
JMSF024B20+ AAGGAGTAGGTGTTAGTGATGGAGGTGGCGGTTGTTGTTGCGGCGGTGACGACCGTTCGC
JMSF016D06+ AAGGAGTAGGTGTTAGTGATGGAGGTGGCGGTTGTTGTTGCGGCGGTGACGACCGTTCGC
JMSF034G20+ AAGGAGTAGGTGTTAGTGATGGAGGTGGCGGTTGTTGTTGCGGCGGTGACGACCGTTCGC
JMSF033G20+ AAGGAGTAGGTGTTAGTGATGGAGGTGGCGGTTGTTGTTGCGGCGGTGACGACCGTTCGC
JMSF027N15+ AAGGAGTAGGTGTTAGTGATGGAGGTGGCGGTTGTTGTTGCGGCGGTGACGACCGTTCGC
                      ____________________________________________________________
consensus AAGGAGTAGGTGTTAGTGATGGAGGTGGCGGTTGTTGTTGCGGCGGTGACGACCGTTCGC
 
. : . : . : . : . : . :
JMSF024B20+ TTGGCGGCGGCGGTTGTTGCTCCATTGAAGTAAATTGGACTGCAAATCAGTAATACGGTC
JMSF016D06+ TTGGCGGCGGCGGTTGTTGCTCCATTGAAGTAAATTGGACTGCAAATCAGTAATACG
JMSF034G20+ TNGGCGNCGGCGNTTGTTGCTCCATTGAAGTAANTTGGACTGCAAATCANTAATNCGGTC
JMSF033G20+ TTGGCGGCGGCGGTTGTTGCTCCATTGAAGTAAATTGGACTGCAAATCAGTAATACGGTC
JMSF027N15+ TTGGCGGCGGCGGTTGTTGCTCCATTGAAGTAAATTGGACTGCAAATCAGTAATACGGTC
                      ____________________________________________________________
consensus TTGGCGGCGGCGGTTGTTGCTCCATTGAAGTAAATTGGACTGCAAATCAGTAATACGGTC