Contig 002281:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF041L15+                       GGGAGGATTAGTTTATCCTCTCTGTTCTAGCTGTCTGCTGCAAATAA
JMSF007K15-                                 AGTTTATCCTCTCTGTTCTAGCTGTCTGCTGCAAATAA
JMSF041L15-                        GGGAGGATTAGTTTATCCTCTCTGTTCTAGCTGTCTGCTGCAAATAA
rJMSF007K15+                                                       GTCTGCTGCAAATAA
                      ____________________________________________________________
consensus                          GGGAGGATTAGTTTATCCTCTCTGTTCTAGCTGTCTGCTGCAAATAA
 
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rJMSF041L15+          AAAAGCCAGAGAATTTATGGTGGCTGCAAAACAATAAGGTTTTATGTGAAGAATGACTTT
JMSF007K15-           AAAAGCCAGAGAATTTATGGTGGCTGCAAAACAATAAGGTTTTATGTGAAGAATGACTTT
JMSF041L15-           AAAAGCCAGAGAATTTATGGTGGCTGCAAAACAATAAGGTTTTATGTGAAGAATGACTTT
rJMSF007K15+          AAAAGCCAGAGAATTTATGGTGGCTGCAAANCAATAAGGTTTTATGTGAAGAATGACTTT
                      ____________________________________________________________
consensus             AAAAGCCAGAGAATTTATGGTGGCTGCAAAACAATAAGGTTTTATGTGAAGAATGACTTT
 
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rJMSF041L15+          GTTGGTTTGTTCCATTCATGGAAGTCTCCCAGAGTTTCTGCATCAGCCTAGCTAGGTGTA
JMSF007K15-           GTTGGTTTGTTCCATTCATGGAAGTCTCCCAGAGTTTCTGCATCAGCCTAGCTAGGTGTA
JMSF041L15-           GTTGGTTTGTTCCATTCATGGAAGTCTCCCAGAGTTTCTGCATCAGCCTAGCTAGGTGTA
rJMSF007K15+          GTTGGTTTGTTCCATTCATGGAAGTCTCCCAGAGTTTCTGCATCAGCCTAGCTAGGTGTA
                      ____________________________________________________________
consensus             GTTGGTTTGTTCCATTCATGGAAGTCTCCCAGAGTTTCTGCATCAGCCTAGCTAGGTGTA
 
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rJMSF041L15+          AAGATTTCATGTTTTCTGTGAGTTTCTGGTAAAGGGTATCATCGATCCTTTCTGTTCACG
JMSF007K15-           AAGATTTCATGTTTTCTGTGAGTTTCTGGTAAAGGGTATCATCGATCCTTTCTGTTCACG
JMSF041L15-           AAGATTTCATGTTTTCTGTGAGTTTCTGGTAAAGGGTATCATCGATCCTTTCTGTTCACG
rJMSF007K15+          AAGATTTCATGTTTTCTGTGAGTTTCTGGTAAAGGGTATCATCGATCCTTTCTGTTCACG
                      ____________________________________________________________
consensus             AAGATTTCATGTTTTCTGTGAGTTTCTGGTAAAGGGTATCATCGATCCTTTCTGTTCACG
 
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rJMSF041L15+          ATGGAGCCTTCTGACATCCCGGGAGGAGCAGAAGGGTGTAGCAGTAACGAGTCGGGGTGG
JMSF007K15-           ATGGAGCCTTCTGACATCCCGGGAGGAGCAGAAGGGTGTAGCAGCAACGAGTCGGGGTGG
JMSF041L15-           ATGGAGCCTTCTGACATCCCGGGAGGAGCAGAAGGGTGTAGCAGTAACGAGTCGGGGTGG
rJMSF007K15+          ATGGAGCCTTCTGACATCCCGGGAGGAGCAGAAGGGTGTAGCAGCAACGAGTCGGGGTGG
                      ____________________________________________________________
consensus             ATGGAGCCTTCTGACATCCCGGGAGGAGCAGAAGGGTGTAGCAGTAACGAGTCGGGGTGG
 
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rJMSF041L15+          ACAATGTATATTGCTTCAGTCAGCCAAGGATACGACGATCAAGATGGCTATGAAGACGAT
JMSF007K15-           ACAATGTATATTGCTTCAGTCAGCCAAGGATACGACGATCAAGATGGCTATGA       
JMSF041L15-           ACAATGTATATTGCTTCAGTCAGCCAAGGATACGACGATCAAGATGGCTATGAAGACGAT
rJMSF007K15+          ACAATGTATATTGCTTCAGTCAGCCAAGGATACGACGATCAAGATGGCTATGAAGACGAT
                      ____________________________________________________________
consensus             ACAATGTATATTGCTTCAGTCAGCCAAGGATACGACGATCAAGATGGCTATGAAGACGAT
 
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rJMSF041L15+          CATAGAGATTCAGAGAGGGTGAGGGGTAAGAATTTTGGCGGCGGTGTTGCAGGCACTGAA
JMSF041L15-           CATAGAGATTCAGAGAGGGTGAGGGGTAAGAATTTTGGCGGCGGTGTTGCAGGCACTGAA
rJMSF007K15+          CATAGAGATTCAGAGAGGGTGAGGGGTAAGAATTTTGGCGGCGGTGTTGCAGGCACTGAA
                      ____________________________________________________________
consensus             CATAGAGATTCAGAGAGGGTGAGGGGTAAGAATTTTGGCGGCGGTGTTGCAGGCACTGAA
 
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rJMSF041L15+          CATGGCGACAGCGATGATTCCATGGCTTCAGATGCCTCTTCGGGCCCGAGTTATCAAGAA
JMSF041L15-           CATGGCGACAGCGATGATTCCATGGCTTCAGATGCCTCTTCGGGCCCGAGTTATCAAGAA
rJMSF007K15+          CATGGCGACAGCGATGATTCCATGGCTTCAGATGCCTCTTCGGGCCCGAGTTATCAAGAA
                      ____________________________________________________________
consensus             CATGGCGACAGCGATGATTCCATGGCTTCAGATGCCTCTTCGGGCCCGAGTTATCAAGAA
 
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rJMSF041L15+          ATCTGCAGAGGCTTGGAGAGAAGCCATGGAAAGGAGAAACTCAAGGAGAAAGGCGCGGGG
JMSF041L15-           ATCTGCAGAGGCTTGGAGAGAAGCCATGGAAAGGAGAAACTCAAGGAGAAAGGCGCGGGG
rJMSF007K15+          ATCTGCAGAGGCTTGGAGAGAAGCCATGGAAAGGAGAAACTCAAGGAGAAAGGCGCGGGG
                      ____________________________________________________________
consensus             ATCTGCAGAGGCTTGGAGAGAAGCCATGGAAAGGAGAAACTCAAGGAGAAAGGCGCGGGG
 
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rJMSF041L15+          AAGTACTCAGTCAAGAAACACCAGAAAGAAGAAGGGGTTAAGGCTAGTAAGAACAGCAAA
JMSF041L15-           AAGTACTCAGTCAAGAAACACCAGAAAGAAGAAGGGGTTAAGGCTAGTAAGAACAGCAAA
rJMSF007K15+          AAGTACTCAGTCAAGAAACACCAGAAAGAAGAAGGGGTTAAGGCTAGTAAGAACAGCAAA
                      ____________________________________________________________
consensus             AAGTACTCAGTCAAGAAACACCAGAAAGAAGAAGGGGTTAAGGCTAGTAAGAACAGCAAA
 
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rJMSF041L15+          CTCGTAAGAGAAGATGCACATAGGGGAAAGAGTTCTTACGGTCAAAGCAGATCATTTCTA
JMSF041L15-           CTCGTAAGAGAAGATGCACATAGGGGAAAGAGTTCTTACGGTCAAAGCAGATCATTTCTA
rJMSF007K15+          CTCGTAAGAGAAGATGCACATAGGGGAAAGAGTTCTTACGGTCAAAGCAGATCATTTCTA
                      ____________________________________________________________
consensus             CTCGTAAGAGAAGATGCACATAGGGGAAAGAGTTCTTACGGTCAAAGCAGATCATTTCTA
 
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rJMSF041L15+          AGAAAAAAGTAACAATTCAGAAATGCCAA                               
JMSF041L15-           AGAAAAAAGTAACAATTCAGAAATGCCAACACCTGTCCAAGCAGTTCAATATTGCTTTGT
rJMSF007K15+          AGAAAAAAGTAACAATTCAGAAATGCCAACACCTGTCCAAGCAGTTCAATATTGCTTTGT
                      ____________________________________________________________
consensus             AGAAAAAAGTAACAATTCAGAAATGCCAACACCTGTCCAAGCAGTTCAATATTGCTTTGT
 
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JMSF041L15-           TTACC                                                       
rJMSF007K15+          TTACCTGTCGATGATGTCCATGGATTAACAGAACAGAAATCCCGCTGAATCTCCAGTTCA
JMSF027K13+              CCTGTCGATGATGTCCATGGATTAACAGAACAGAAATCCCGCTGAATCTCCAGTTCA
                      ____________________________________________________________
consensus             TTACCTGTCGATGATGTCCATGGATTAACAGAACAGAAATCCCGCTGAATCTCCAGTTCA
 
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rJMSF007K15+          AATGCTGTGGAATCAAGCAATCGAACCAACACTGTCAGTACAGTTCAT            
JMSF027K13+           AATGCTGTGGAATCAAGCAATCGAACCAACACTGTCAGTACAGTTCATAAAATGTCACGG
                      ____________________________________________________________
consensus             AATGCTGTGGAATCAAGCAATCGAACCAACACTGTCAGTACAGTTCATAAAATGTCACGG
 
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JMSF027K13+           TTTAACCATTGCATGTGCAAAAATCTCGTGTTTTTTGATGTCATCAGTTTCATATGCAGC
                      ____________________________________________________________
consensus             TTTAACCATTGCATGTGCAAAAATCTCGTGTTTTTTGATGTCATCAGTTTCATATGCAGC
 
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JMSF027K13+           ATATTTAGAATGTGTAAGAGTAAATTTTCATAAGAGAATTGCAGAGTTGGCAAAGAAAAG
                      ____________________________________________________________
consensus             ATATTTAGAATGTGTAAGAGTAAATTTTCATAAGAGAATTGCAGAGTTGGCAAAGAAAAG
 
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JMSF027K13+           TCGCAAATTTTAGCAAGAAGATGTTCAAGACATTCCAGCCCGTTGTTCGTTGAAGCAGTT
                      ____________________________________________________________
consensus             TCGCAAATTTTAGCAAGAAGATGTTCAAGACATTCCAGCCCGTTGTTCGTTGAAGCAGTT
 
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JMSF027K13+           AGTAACCCACTCTCCTTTCCAGCCTCTTCCAGGCATATGCAGGTAGGTCAGCTGAGTTTA
                      ____________________________________________________________
consensus             AGTAACCCACTCTCCTTTCCAGCCTCTTCCAGGCATATGCAGGTAGGTCAGCTGAGTTTA
 
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JMSF027K13+           TAGTCTTTTGGGCAGTTCAATCTTGAAGATCTCTATTCAAATCGGTGCTATAACTCAAGA
                      ____________________________________________________________
consensus             TAGTCTTTTGGGCAGTTCAATCTTGAAGATCTCTATTCAAATCGGTGCTATAACTCAAGA
 
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JMSF027K13+           AATAAACATGTGTTAGGGCGTTAGGCGGAGGCCTAGAGGGCCTTGCCACCAAGTCTAGAT
                      ____________________________________________________________
consensus             AATAAACATGTGTTAGGGCGTTAGGCGGAGGCCTAGAGGGCCTTGCCACCAAGTCTAGAT
 
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JMSF027K13+           TTGGAACGTGCTTGAATATAAAGAAATAAAGTTGCACGTTCCTCACTAGCTAAAACTTTT
                      ____________________________________________________________
consensus             TTGGAACGTGCTTGAATATAAAGAAATAAAGTTGCACGTTCCTCACTAGCTAAAACTTTT
 
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JMSF027K13+           GACGGGGAGTAAGTGTTTGATCCTGACAGCATGCTATTGTCGTTTCTAACTTCTCGATCA
                      ____________________________________________________________
consensus             GACGGGGAGTAAGTGTTTGATCCTGACAGCATGCTATTGTCGTTTCTAACTTCTCGATCA
 
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JMSF027K13+           CCTATCTCTTCCATACATTCTTCGGTGATTAGCAGATTCCATAATCACAAGAAGTGTTCC
                      ____________________________________________________________
consensus             CCTATCTCTTCCATACATTCTTCGGTGATTAGCAGATTCCATAATCACAAGAAGTGTTCC