| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS010F04 | Sequence | 605 | 002275 (7) | emb|CDP18860.1| | 4e-44 | unnamed protein product [Coffea canephora] | |||||
| JMFS012A11 | Sequence | 627 | 002275 (7) | emb|CAA71893.1| | 5e-18 | putative carbamoyl phosphate synthetase, large chain [Nicotiana tabacum] | |||||
| JMFS125A07 | Sequence | 576 | 002275 (7) | ref|XP_011074771.1| | 1e-119 | PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Sesamum ind | |||||
| JMFS149D06 | Sequence | 605 | 002275 (7) | emb|CDP18860.1| | 2e-79 | unnamed protein product [Coffea canephora] | |||||
| JMFS157B12 | Sequence | 512 | 002275 (7) | ref|XP_011074771.1| | 4e-93 | PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Sesamum ind | |||||
| JMSF027E10 | Sequence | 654 | 002275 (7) | emb|CAA71893.1| | 7e-19 | putative carbamoyl phosphate synthetase, large chain [Nicotiana tabacum] | 782 | 013989 (2) | emb|CDP18860.1| | 5e-109 | unnamed protein product [Coffea canephora] |
| JMSF034G19 | Sequence | 632 | 002275 (7) | emb|CAA71893.1| | 6e-20 | putative carbamoyl phosphate synthetase, large chain [Nicotiana tabacum] | 707 | 013989 (2) | emb|CDP18860.1| | 2e-90 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMFS125A07+ ATCCCAAC
____________________________________________________________
consensus ATCCCAAC
. : . : . : . : . : . :
JMFS125A07+ AAAGACTTTTCAACCAGAACCTGTGATGTCAAACTAGCAGCAAGCCCCGACTTACATATG
____________________________________________________________
consensus AAAGACTTTTCAACCAGAACCTGTGATGTCAAACTAGCAGCAAGCCCCGACTTACATATG
. : . : . : . : . : . :
JMFS125A07+ GCCTCGAATTCCTCTCTGTTGTAGGCAATCCCACCTCCAGTTCCACCCAGCGTGAATGCT
____________________________________________________________
consensus GCCTCGAATTCCTCTCTGTTGTAGGCAATCCCACCTCCAGTTCCACCCAGCGTGAATGCT
. : . : . : . : . : . :
JMFS125A07+ GGACGTATTATCAACGGGAACTCCCCTATCGTATTAGCAATCTCAAAACACTCCTCGAGA
JMFS157B12+ CGAGG
____________________________________________________________
consensus GGACGTATTATCAACGGGAACTCCCCTATCGTATTAGCAATCTCAAAACACTCCTCGAGG
. : . : . : . : . : . :
JMFS125A07+ GTTGTCCCGATCCCAGAAGGAGGTGTCTTGAGCCCAATATTGTTCATTGCCTGCTTGAAC
JMFS157B12+ GTAGTCCCAATCCCGGAAGGGGGTGTCTTTAGCCCAATGTTCTTCATAGCCTGCTTAAAC
____________________________________________________________
consensus GTTGTCCCGATCCCGGAAGGGGGTGTCTTTAGCCCAATGTTGTTCATTGCCTGCTTGAAC
. : . : . : . : . : . :
JMFS125A07+ AGATCCCTATCCTCCGCCTTCTTGATGCAATCAAGCTTCGCCCCAATCAACTCAACACCA
JMFS157B12+ AGATCCCTATCCTCTGCCTTCTTGATGGCATCGAGTTTCGCCCCAATCAACTCCACACCA
JMFS149D06+ TTCGCCCCAATCAACTCCACACCA
____________________________________________________________
consensus AGATCCCTATCCTCTGCCTTCTTGATGGCATCGAGTTTCGCCCCAATCAACTCCACACCA
. : . : . : . : . : . :
JMFS125A07+ TACTTCTCAAGCGCCCCGCTCTCAGCCAATGCCACTGCAAGGTTAAGAGCAGTCTGGCCA
JMFS157B12+ TACTTGTCAAGAACCCCGCTCTCGGCCAAAGCCACCGCGAGGTTGAGAGCCGTCTGGCCG
JMFS149D06+ TACTTGTCAAGAACNCCGCTCTCGGCCAAAGCCACCGCGAGGTTGAGAGCCGTCTGGCCG
____________________________________________________________
consensus TACTTGTCAAGAACCCCGCTCTCGGCCAAAGCCACCGCGAGGTTGAGAGCCGTCTGGCCG
. : . : . : . : . : . :
JMFS125A07+ CCCATGGTGGGCAGCAAAGCATCCGGTCTCTCCTTCTCGAGCACTTGCTCAACAATCTCG
JMFS157B12+ CCCATGGTGGGCAGCAAAGCATCCGGCCGCTCTTTCTCGAGCACCTGCTCCACAAGCTCG
JMFS149D06+ CCCATGGTGGGCAGCAAAGCATCCGGCCGCTCTTTCTCGAGCACCTGCTCCACAAGCTCG
JMFS010F04+ AGCACCTGCTCCACAAGCTCG
____________________________________________________________
consensus CCCATGGTGGGCAGCAAAGCATCCGGCCGCTCTTTCTCGAGCACCTGCTCCACAAGCTCG
. : . : . : . : . : . :
JMFS125A07+ GGAGTCAGTGGCTCAATATAAGTCCTATCCGCCATTTCTGGATCAGTCATAATAGTAGCA
JMFS157B12+ GGCGTCATAGGCTCAATATAAGTCCTGTCCGCCATTTCTGGGTCAGTCATAATGGTGGCA
JMFS149D06+ GGCGTCATAGGCTCAATATAAGTCCTGTCCGCCATTTCTGGGTCAGTCATAATGGTGGCA
JMFS010F04+ GGCGTCATAGGCTCAATATAAGTCCTGTCCGCCATTTCTGGGTCAGTCATAATGGTGGCA
____________________________________________________________
consensus GGCGTCATAGGCTCAATATAAGTCCTGTCCGCCATTTCTGGGTCAGTCATAATGGTGGCA
. : . : . : . : . : . :
JMFS125A07+ GGATTGGAGTTAATCAGAATCACCTCATACCCCTCTTCCCTGAGAGCCTTACAAGCTTGT
JMFS157B12+ GGGTTTGAGTTAATCAAAATCACCTCGTACCCTTCTTCCCTAAGCGCTTTACACGCCTGC
JMFS149D06+ GGGTTTGAGTTAATCAAAATCACCTCGTACCCTTCTTCCCTAAGCGCTTTACACGCCTGC
JMFS010F04+ GGGTTTGAGTTAATCAAAATCACCTCGTACCCTTCTTCCCTAAGCGCTTTACACGCCTGC
____________________________________________________________
consensus GGGTTTGAGTTAATCAAAATCACCTCGTACCCTTCTTCCCTAAGCGCTTTACACGCCTGC
. : . : . : . : . : . :
JMFS125A07+ GTCCCAGAATAATCAAACTCACAGGCTT
JMFS157B12+ GTCCCTGAATAATCAAACTCGCAGGCTTGCCCAATCACTATAGGCCCGGCGCCTAATATC
JMFS149D06+ GTCCCTGAATAATCAAACTCGCAGGCTTGCCCAATCACTATAGGCCCGGCGCCTAATATC
JMFS010F04+ GTCCCTGAATAATCAAACTCGCAGGCTTGCCCAATCACTATAGGCCCGGCGCCTAATATC
JMSF034G19+ AATAATCAAACTCGCAGGCTTGCCCAATCACTATAGGCCCGGCGCCTAATATC
JMFS012A11+ CAAACTCGCAGGCTTGCCCAATCACTATAGGCCCGGCGCCTAATATC
JMSF027E10+ GAATAATCAAACTCGCAGGCTTGCCCAATCACTATAGGCCAGGCGCCTAATATC
____________________________________________________________
consensus GTCCCTGAATAATCAAACTCGCAGGCTTGCCCAATCACTATAGGCCCGGCGCCTAATATC
. : . : . : . : . : . :
JMFS157B12+ AAAATCCTTTTGATATCCGTCCTCTTCCCCACCACCGTTTGCTTACTAGAACCCTCACTG
JMFS149D06+ AAAATCCTTTTGATATCCGTCCTCTTCCCCACCACCGTTTGCTTACTAGAACCCTCACTG
JMFS010F04+ AAAATCCTTTTGATATCCGTCCTCTTCCCCACCACCGTTTGCTTACTAGAACCCTCACTG
JMSF034G19+ AAAATCCTTTTGATATCCGTCCTCTTCCCCACCACCGTTTGCTTACTAGAACCCTCACTG
JMFS012A11+ AAAATCCTTTTGATATCCGTCCTCTTCCCCACCACCGTTTGCTTACTAGAACCCTCACTG
JMSF027E10+ AAAATCCTTTTGATATCCGTCCTCTTCCCCACCACCGTTTGCTTACTAGAACCCTCACTG
____________________________________________________________
consensus AAAATCCTTTTGATATCCGTCCTCTTCCCCACCACCGTTTGCTTACTAGAACCCTCACTG
. : . : . : . : . : . :
JMFS157B12+ CCCTGGCATCGAATCGGGCTCGTTCGG
JMFS149D06+ CCCTGGCATCGAATCGGGCTCGTTCGGGCCCAAACTTTGCCCGAACGCAAGACCACGGGC
JMFS010F04+ CCCTGGCATCGAATCGGGCTCGTTCGGGCCCAAACTTTGCCCGAACGCAAGACCACGGGC
JMSF034G19+ CCCTGGCATCGAATCGGGCTCGTTCGGGCCCAAACTTTGCCCGAACGCAAGACCACGGGC
JMFS012A11+ CCCTGGCATCGAATCGGGCTCGTTCGGGCCCAAACTTTGCCCGAACGCAAGACCACGGGC
JMSF027E10+ CCCTGGCATCGAATCGGGCTCGTTCGGGCCCAAACTTTGCCCGAACGCAAGACCACGGGC
____________________________________________________________
consensus CCCTGGCATCGAATCGGGCTCGTTCGGGCCCAAACTTTGCCCGAACGCAAGACCACGGGC
. : . : . : . : . : . :
JMFS149D06+ TGATATTGGAGGCTCAAGCATGATGATTTCTTCTTCGCGCTTGTTTTCCTAAACTGGGCA
JMFS010F04+ TGATATTGGAGGCT-AAGCATGATGATTTCTTCTTCGCGCTTGTTTTCCTAAACTGGGCA
JMSF034G19+ TGATATTGGAGGCTCAAGCATGATGATTTCTTCTTCGCGCTTGTTTTCCTAAACTGGGCA
JMFS012A11+ TGATATTGGAGGCTCAAGCATGATGATTTCTTCTTCGCGCTTGTTTTCCTAAACTGGGCA
JMSF027E10+ TGATATTGGAGGCTCAAGCATGATGATTTCTTCTTCGCGCTTGTTTTCCTAAACTGGGCA
____________________________________________________________
consensus TGATATTGGAGGCTCAAGCATGATGATTTCTTCTTCGCGCTTGTTTTCCTAAACTGGGCA
. : . : . : . : . : . :
JMFS149D06+ AAAACCCGAAAAGCATCTGATTTGGATAAATAGGGCTTAGCAGGCGCAAGGGTATAGGAC
JMFS010F04+ AAAACCCGAAAAGCATCTGATTTGGATAAATAGGGCTTAGCAGGCGCAAGGGTATAGGAC
JMSF034G19+ AAAACCCGAAAAGCATCTGATTTGGATAAATAGGGCTTAGCAGGCGCAAGGGTATAGGAC
JMFS012A11+ AAAACCCGAAAAGCATCTGATTTGGATAAATAGGGCTTAGCAGGCGCAAGGGTATAGGAC
JMSF027E10+ AAAACCCGAAAAGCATCTGATTTGGATAAATAGGGCTTAGCAGGCGCAAGGGTATAGGAC
____________________________________________________________
consensus AAAACCCGAAAAGCATCTGATTTGGATAAATAGGGCTTAGCAGGCGCAAGGGTATAGGAC
. : . : . : . : . : . :
JMFS149D06+ GAAGACGACGAAGAAACGAGCTTGGACACAA
JMFS010F04+ GAAGACGACGAAGAAACGAGCTTGGACACAACATTCTCACAGTGATTCATACAAAACCCC
JMSF034G19+ GAAGACGACGAAGAAACGAGCTTGGACACAACATTCTCACAGTGATTCATACAAAACCCC
JMFS012A11+ GAAGACGACGAAGAAACGAGCTTGGACACAACATTCTCACAGTGATTCATACAAAACCCC
JMSF027E10+ GAAGACGACGAAGAAACGAGCTTGGACACAACATTCTCACAGTGATTCATACAAAACCCC
____________________________________________________________
consensus GAAGACGACGAAGAAACGAGCTTGGACACAACATTCTCACAGTGATTCATACAAAACCCC
. : . : . : . : . : . :
JMFS010F04+ ATTTCTCACACTCTAAGTCTCCTCCCTAGTTCCAATGAAGTTTAGTACGAAGACCCTTTT
JMSF034G19+ ATTTCTCACACTCTAAGTCTCCTCCCTAGTTCCAATGAAGTTTAGTACGAAGACCCTTTT
JMFS012A11+ ATTTCTCACACTCTAAGTCTCCTCCCTAGTTCCAATGAAGTTTAGTACGAAGACCCTTTT
JMSF027E10+ ATTTCTCACACTCTAAGTCTCCTCCCTAGTTCCAATGAAGTTTAGTACGAAGACCCTTTT
____________________________________________________________
consensus ATTTCTCACACTCTAAGTCTCCTCCCTAGTTCCAATGAAGTTTAGTACGAAGACCCTTTT
. : . : . : . : . : . :
JMFS010F04+ GGGTTTAAGAAGCACTAGGGTTTTCGAGGGGTGAATGTGGCGGGT
JMSF034G19+ GGGTTTAAGAAGCACTAGGGTTTTCGAGGGGTGAATGTGGCGGGTAAAAACCGAGTCTTG
JMFS012A11+ GGGTTTAAGAAGCACTAGGGTTTTCGAGGGGTGAATGTGGCGGGTAAAAACCGAGTCTTG
JMSF027E10+ GGGTTTAAGAAGCACTAGGGTTTTCGAGGGGTGAATGTGGCGGGTAAAAACCGAGTCTTG
____________________________________________________________
consensus GGGTTTAAGAAGCACTAGGGTTTTCGAGGGGTGAATGTGGCGGGTAAAAACCGAGTCTTG
. : . : . : . : . : . :
JMSF034G19+ GAAGCTATATGGGGAAAGTTGTGGGAATATATAAAAAGGAAACGGAAATTGCAGAGAATA
JMFS012A11+ GAAGCTATATGGGGAAAGTTGTGGGAATATATAAAAAGGAAACGGAAATTGCAGAGAATA
JMSF027E10+ GAAGCTATATGGGGAAAGTTGTGGGAATATATAAAAAGGAAACGGAAATTGCAGAGAATA
____________________________________________________________
consensus GAAGCTATATGGGGAAAGTTGTGGGAATATATAAAAAGGAAACGGAAATTGCAGAGAATA
. : . : . : . : . : . :
JMSF034G19+ TCTGAGTTGGAGGTCAGCTAAAATGTTGTCTTGATAATTATTGGAGTAGATCAGTAGAGT
JMFS012A11+ TCTGAGTTGGAGGTCAGCTAAAATGTTGTCTTGATAATTATTGGAGTAGATCAGTAGAGT
JMSF027E10+ TCTGAGTTGGAGGTCAGCTAAAATGTTGTCTTGATAATTATTGGAGTAGATCAGTAGAGT
____________________________________________________________
consensus TCTGAGTTGGAGGTCAGCTAAAATGTTGTCTTGATAATTATTGGAGTAGATCAGTAGAGT
. : . : . : . : . : . :
JMSF034G19+ GGCAGAACTCAGAAGATGAGAGCCGCCGCTCAAAGGCC
JMFS012A11+ GGCAGAACTCAGAAGATGAGAGCCGCCGCTCAAAGGCC
JMSF027E10+ GGCAGAACTCAGAAGATGAGAGCCGCCGCTCAAAGGCCAAAGCAACAAACAACGTTATTC
____________________________________________________________
consensus GGCAGAACTCAGAAGATGAGAGCCGCCGCTCAAAGGCCAAAGCAACAAACAACGTTATTC