| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS143B08 | Sequence | 614 | 002271 (5) | emb|CDP09162.1| | 5e-25 | unnamed protein product [Coffea canephora] | |||||
| JMFS148A03 | Sequence | 585 | 002271 (5) | emb|CDP09162.1| | 8e-21 | unnamed protein product [Coffea canephora] | |||||
| JMSF019F23 | Sequence | 465 | 002271 (5) | emb|CDP09162.1| | 4e-08 | unnamed protein product [Coffea canephora] | 788 | 002891 (3) | ref|XP_009616257.1| | 9e-60 | PREDICTED: ATP-dependent zinc metalloprotease FTSH 9, chloroplastic-like isofor |
| JMSF026N08 | Sequence | 652 | 002271 (5) | emb|CDP09162.1| | 6e-30 | unnamed protein product [Coffea canephora] | 765 | 002891 (3) | ref|XP_009616257.1| | 2e-56 | PREDICTED: ATP-dependent zinc metalloprotease FTSH 9, chloroplastic-like isofor |
| JMSF028L07 | Sequence | 672 | 002271 (5) | emb|CDP09162.1| | 8e-33 | unnamed protein product [Coffea canephora] | 799 | 002891 (3) | ref|XP_009616257.1| | 1e-59 | PREDICTED: ATP-dependent zinc metalloprotease FTSH 9, chloroplastic-like isofor |
This contig is upended
. : . : . : . : . : . :
JMSF028L07+ GGAGCCATGGGT
____________________________________________________________
consensus GGAGCCATGGGT
. : . : . : . : . : . :
JMSF028L07+ TCTGACCCAGGCAATGGAATTCCTGGACCGAGCAATCTCATCACGATCATAACTATCCCC
JMFS143B08+ TCTCATCACGATCATAACTATCGCC
JMSF026N08+ AGGCAATGGAATTCCTGGACCGAGCAATCTCATCACGATCATAACTATCCCC
____________________________________________________________
consensus TCTGACCCAGGCAATGGAATTCCTGGACCGAGCAATCTCATCACGATCATAACTATCCCC
. : . : . : . : . : . :
JMSF028L07+ AATTGCAAAAACACTCCCACTTCCTGTGCTTGAACTATGGGTTGCCACCGCCATTTTGAC
JMFS143B08+ AATTGCAAAAACACTCCCACTTCCTGTGCTTGAACTATGGGTTGCCACCGCCATTTTGAC
JMFS148A03+ CACTCCCACTTCCTGTGCTTGAACTATGGGTTGCCACCGCCATTTTGAC
JMSF026N08+ AATTGCAAAAACACTCCCACTTCCTGTGCTTGAACTATGGGTTGCCACCGCCATTTTGAC
____________________________________________________________
consensus AATTGCAAAAACACTCCCACTTCCTGTGCTTGAACTATGGGTTGCCACCGCCATTTTGAC
. : . : . : . : . : . :
JMSF028L07+ CACCACCAGTCCCCTTTCCCTTGACTTTCTTTCCGAGAAGAACCCGAACTTGAACCCGAT
JMFS143B08+ CACCACCAGTCCCCTTTCCCTTGACTTTCTTTCCGAGAAGAACCCGAACTTGAACCCGAT
JMFS148A03+ CACCACCAGTCCCCTTTCCCTTGACTTTCTTTCCGAGAAGAACCCGAACTTGAACCCGAT
JMSF026N08+ CACCACCAGTCCCCTTTCCCTTGACTTTCTTTCCGAGAAGAACCCGAACTTGAACCCGAT
____________________________________________________________
consensus CACCACCAGTCCCCTTTCCCTTGACTTTCTTTCCGAGAAGAACCCGAACTTGAACCCGAT
. : . : . : . : . : . :
JMSF028L07+ CCCGACCCTGAAACCGGAGAAGTATTACTTTCCGTCGTAGTAGCTTCGTTTGTATCGTTG
JMFS143B08+ CCCGACCCTGAAACCGGAGAAGTATTACTTTCCGTCGTAGTAGCTTCGTTTGTATCGTTG
JMFS148A03+ CCCGACCCTGAAACCGGAGAAGTATTACTTTCCGTCGTAGTAGCTTCGTTTGTATCGTTG
JMSF019F23+ GGAGAAGTATTACTTTCCGTCGTAGTAGCTTCGTTTGTATCGTTG
JMSF026N08+ CCCGACCCTGAAACCGGAGAAGTATTACTTTCCGTCGTAGTAGCTTCGTTTGTATCGTTG
____________________________________________________________
consensus CCCGACCCTGAAACCGGAGAAGTATTACTTTCCGTCGTAGTAGCTTCGTTTGTATCGTTG
. : . : . : . : . : . :
JMSF028L07+ GAATCAGTGCCTTGTTCACAAGAACTGTTTGCCCTAACTCTAATCTCCCTATCTCTTAGG
JMFS143B08+ GAATCAGTGCCTTGTTCACAAGAACTGTTTGCCCTAACTCTAATCTCCCTATCTCTTAGG
JMFS148A03+ GAATCAGTGCCTTGTTCACAAGAACTGTTTGCCCTAACTCTAATCTCCCTATCTCTTAGG
JMSF019F23+ GAATCAGTGCCTTGTTCACAAGAACTGTTTGCCCTAACTCTAATCTCCCTATCTCTTAGG
JMSF026N08+ GAATCAGTGCCTTGTTCACAAGAACTGTTTGCCCTAACTCTAATCTCCCTATCTCTTAGG
____________________________________________________________
consensus GAATCAGTGCCTTGTTCACAAGAACTGTTTGCCCTAACTCTAATCTCCCTATCTCTTAGG
. : . : . : . : . : . :
JMSF028L07+ TATCTGTTCTTCGAACGGGTCCCCGGAAGTTCCCAATTCACCGAAACCCTAGGTGGAGCT
JMFS143B08+ TATCTGTTCTTCGAACGGGTCCCCGGAAGTTCCCAATTCACCGAAACCCTAGGTGGAGCT
JMFS148A03+ TATCTGTTCTTCGAACGGGTCCCCGGAAGTTCCCAATTCACCGAAACCCTAGGTGGAGCT
JMSF019F23+ TATCTGTTCTTCGAACGGGTCCCCGGAAGTTCCCAATTCACCGAAACCCTAGGTGGAGCT
JMSF026N08+ TATCTGTTCTTCGAACGGGTCCCCGGAAGTTCCCAATTCACCGAAACCCTAGGTGGAGCT
____________________________________________________________
consensus TATCTGTTCTTCGAACGGGTCCCCGGAAGTTCCCAATTCACCGAAACCCTAGGTGGAGCT
. : . : . : . : . : . :
JMSF028L07+ CCTGGCGGCGTAGTATTAACAATCAAACGACTCGAATTCCTCTGTAAACTCCAACACCGA
JMFS143B08+ CCTGGCGGCGTAGTATTAACAATCAAACGACTCGAATTCCTCTGTAAACTCCAACACCGA
JMFS148A03+ CCTGGCGGCGTAGTATTAACAATCAAACGACTCGAATTCCTCTGTAAACTCCAACACCGA
JMSF019F23+ CCTGGCGGCGTAGTATTAACAATCAAACGACTCGAATTCCTCTGTAAACTCCAACACCGA
JMSF026N08+ CCTGGCGGCGTAGTATTAACAATCAAACGACTCGAATTCCTCTGTAAACTCCAACACCGA
____________________________________________________________
consensus CCTGGCGGCGTAGTATTAACAATCAAACGACTCGAATTCCTCTGTAAACTCCAACACCGA
. : . : . : . : . : . :
JMSF028L07+ CTACAGCAGGCAACGCTCTGCCTGTAAACATACTTGTGATTAAAGTGCCAATTTAACGAA
JMFS143B08+ CTACAGCAGGCAACGCTATGCCTGTAAACATACTTGTGATTAAAGTGCCAATTTAACGAA
JMFS148A03+ CTACAGCAGGCAACGCTCTGCCTGTAAACATACTTGTGATTAAAGTGCCAATTTAACGAA
JMSF019F23+ CTACAGCAGGCAACGCTCTGCCTGTAAACATACTTGTGATTAAAGTGCCAATTTAACGAA
JMSF026N08+ CTACAGCAGGCAACGCTCTGCCTGTAAACATACTTGTGATTAAAGTGCCAATTTAACGAA
____________________________________________________________
consensus CTACAGCAGGCAACGCTCTGCCTGTAAACATACTTGTGATTAAAGTGCCAATTTAACGAA
. : . : . : . : . : . :
JMSF028L07+ ATTTGGGAGTGAATTATGGGCGGGAGACCTTCTACGGCTGCCATTCCAGATGGAGAAAGC
JMFS143B08+ ATTTGGGAGTGAATTATGGGCGGGAGACCTTCTACGGCTGCCATTCCAGATGGAGAAAGC
JMFS148A03+ ATTTGGGAGTGAATTATGGGCGGGAGACCTTCTACGGCTGCCATTCCAGATGGAGAAAGC
JMSF019F23+ ATTTGGGAGTGAATTATGGGCGGGAGACCTTCTACGGCTGCCATTCCAGATGGAGAAAGC
JMSF026N08+ ATTTGGGAGTGAATTATGGGCGGGAGACCTTCTACGGCTGCCATTCCAGATGGAGAAAGC
____________________________________________________________
consensus ATTTGGGAGTGAATTATGGGCGGGAGACCTTCTACGGCTGCCATTCCAGATGGAGAAAGC
. : . : . : . : . : . :
JMSF028L07+ AGAGAAAAAGACAACAAAATCGGAGTCGGATAAGAAGTCGTGTATTTTACATATACAGAA
JMFS143B08+ AGAGAAAAAGACAACAAAATCGGAGTCGGATAAGAAGTCGTGTATTTTACATATACAGAA
JMFS148A03+ AGAGAAAAAGACAACAAAATCGGAGTCGGATAAGAAGTCGTGTATTTTACATATACAGAA
JMSF019F23+ AGAGAAAAAGACAACAAAATCGGAGTCGGATAAGAAGTCGTGTATTTTACATATACAGAA
JMSF026N08+ AGAGAAAAAGACAACAAAATCGGAGTCGGATAAGAAGTCGTGTATTTTACATATACAGAA
____________________________________________________________
consensus AGAGAAAAAGACAACAAAATCGGAGTCGGATAAGAAGTCGTGTATTTTACATATACAGAA
. : . : . : . : . : . :
JMSF028L07+ GAAGGGATTGAAGAAGAGCAGAGAAATCAGATATGGAGGTCGAGGTCGAGGTTGAG
JMFS143B08+ GAAGGGATTGAAGAAGAGCAGAGAAATCAGATATGGAGGTCGAGGTCGA
JMFS148A03+ GAAGGGATTGAAGAAGAGCAGAGAAATCAGATATGGAGGTCGAGGTCGAGGTTGAG
JMSF019F23+ GAAGGGATTGAAGAAGAGCAGAGAAATCAGATATGGAGGTCGAGGTCGAGGTTGAG
JMSF026N08+ GAAGGGATTGAAGAAGAGCAGAGAAATCAGATATGGAGGTCGAGGTCGAGGTTGAGGTCC
____________________________________________________________
consensus GAAGGGATTGAAGAAGAGCAGAGAAATCAGATATGGAGGTCGAGGTCGAGGTTGAGGTCC