Contig 002270:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026M12Sequence656002270 (2)ref|XP_006359754.1|6e-79PREDICTED: F-box/LRR-repeat protein 4-like isoform X1 [Solanum tuberosum] ref|X222004305 (2)
JMSF032K21Sequence656002270 (2)ref|XP_006359754.1|6e-79PREDICTED: F-box/LRR-repeat protein 4-like isoform X1 [Solanum tuberosum] ref|X646004305 (2)ref|XP_009626357.1|8e-12PREDICTED: F-box/LRR-repeat protein 20-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF032K21+ TGAAATCCGATCACATTCAGCAATCATCAATTTCTTTAAGGTATGACACAAAGGCC
JMSF026M12+ TGAAATCCGATCACATTCAGCAATCATCAATTTCTTTAAGGTATGACACAAAGGCC
                      ____________________________________________________________
consensus TGAAATCCGATCACATTCAGCAATCATCAATTTCTTTAAGGTATGACACAAAGGCC
 
. : . : . : . : . : . :
JMSF032K21+ CTAAAGCTAGGGACTTCAAACCCAAGTCCGATATCAAGCAACAACCCTGCAAATTCAAAC
JMSF026M12+ CTAAAGCTAGGGACTTCAAACCCAAGTCCGATATCAAGCAACAACCCTGCAAATTCAAAC
                      ____________________________________________________________
consensus CTAAAGCTAGGGACTTCAAACCCAAGTCCGATATCAAGCAACAACCCTGCAAATTCAAAC
 
. : . : . : . : . : . :
JMSF032K21+ TCTCCAAAGAATTGGCTGTCCCAATAGATCTAAGCCCTTCATCAGTAACCCTTCGACAGT
JMSF026M12+ TCTCCAAAGAATTGGCTGTCCCAATAGATCTAAGCCCTTCATCAGTAACCCTTCGACAGT
                      ____________________________________________________________
consensus TCTCCAAAGAATTGGCTGTCCCAATAGATCTAAGCCCTTCATCAGTAACCCTTCGACAGT
 
. : . : . : . : . : . :
JMSF032K21+ AACTCAAGTCCAAAACCCTCAAATTGTGCGCAAAATTAACCAGTGAAGAAACCCCAGCAT
JMSF026M12+ AACTCAAGTCCAAAACCCTCAAATTGTGCGCAAAATTAACCAGTGAAGAAACCCCAGCAT
                      ____________________________________________________________
consensus AACTCAAGTCCAAAACCCTCAAATTGTGCGCAAAATTAACCAGTGAAGAAACCCCAGCAT
 
. : . : . : . : . : . :
JMSF032K21+ CTCCTACACCACTTCTTTTCCTCAATAAAACCGAGTTTAAATCACAACAGCCCTTTGCAA
JMSF026M12+ CTCCTACACCACTTCTTTTCCTCAATAAAACCGAGTTTAAATCACAACAGCCCTTTGCAA
                      ____________________________________________________________
consensus CTCCTACACCACTTCTTTTCCTCAATAAAACCGAGTTTAAATCACAACAGCCCTTTGCAA
 
. : . : . : . : . : . :
JMSF032K21+ TAGCACGCAGACCCTCATCATCAAAATCATCAAAGCTCAGATTATCATCCGTTTCATAAT
JMSF026M12+ TAGCACGCAGACCCTCATCATCAAAATCATCAAAGCTCAGATTATCATCCGTTTCATAAT
                      ____________________________________________________________
consensus TAGCACGCAGACCCTCATCATCAAAATCATCAAAGCTCAGATTATCATCCGTTTCATAAT
 
. : . : . : . : . : . :
JMSF032K21+ AAAGTTGAGTTTTTTCCTTGAAATTCAGGTTCAATGACTGAATTATTGGGCACGTCTGGG
JMSF026M12+ AAAGTTGAGTTTTTTCCTTGAAATTCAGGTTCAATGACTGAATTATTGGGCACGTCTGGG
                      ____________________________________________________________
consensus AAAGTTGAGTTTTTTCCTTGAAATTCAGGTTCAATGACTGAATTATTGGGCACGTCTGGG
 
. : . : . : . : . : . :
JMSF032K21+ CCAAAAATTCGACATGGGAATTCGAGATTACCTCAGAACATTCGAATTTAAGAAGATTTG
JMSF026M12+ CCAAAAATTCGACATGGGAATTCGAGATTACCTCAGAACATTCGAATTTAAGAAGATTTG
                      ____________________________________________________________
consensus CCAAAAATTCGACATGGGAATTCGAGATTACCTCAGAACATTCGAATTTAAGAAGATTTG
 
. : . : . : . : . : . :
JMSF032K21+ GGTACCTGGGAAGGAAGTTTCGGAGAAGGTTGGGCTCGAAAACGCGGAGATTTGAAGATG
JMSF026M12+ GGTACCTGGGAAGGAAGTTTCGGAGAAGGTTGGGCTCGAAAACGCGGAGATTTGAAGATG
                      ____________________________________________________________
consensus GGTACCTGGGAAGGAAGTTTCGGAGAAGGTTGGGCTCGAAAACGCGGAGATTTGAAGATG
 
. : . : . : . : . : . :
JMSF032K21+ TCATGCCCTCGATTATGAACCATTGCTTGCAAACTAGAGAACATGACTTTCTGTCATTTC
JMSF026M12+ TCATGCCCTCGATTATGAACCATTGCTTGCAAACTAGAGAACATGACTTTCTGTCATTTC
                      ____________________________________________________________
consensus TCATGCCCTCGATTATGAACCATTGCTTGCAAACTAGAGAACATGACTTTCTGTCATTTC
 
. : . : . : . : . : . :
JMSF032K21+ GGTCTTGGATCCGGTGGAAAATCAAGGCCAGTACATCATCTCCTAGTCTCTCCATTGCCC
JMSF026M12+ GGTCTTGGATCCGGTGGAAAATCAAGGCCAGTACATCATCTCCTAGTCTCTCCATTGCCC
                      ____________________________________________________________
consensus GGTCTTGGATCCGGTGGAAAATCAAGGCCAGTACATCATCTCCTAGTCTCTCCATTGCCC