Contig 002269:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN008L20Sequence145002269 (2)
JMSF026K18Sequence684002269 (2)ref|XP_010907549.1|1e-12PREDICTED: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplas679018230ref|XP_004247627.1|6e-07PREDICTED: probable nucleolar protein 5-2 [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF026K18-                                          GATCACTCACTCTGCGCCTGGATTTTAGT
                      ____________________________________________________________
consensus                                            GATCACTCACTCTGCGCCTGGATTTTAGT
 
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JMSF026K18-           TCAAGGAAGTCTCAACTCCTTTCTGACAAGTACCGCAACTCTTCTCCCTATCTCCCATTC
                      ____________________________________________________________
consensus             TCAAGGAAGTCTCAACTCCTTTCTGACAAGTACCGCAACTCTTCTCCCTATCTCCCATTC
 
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JMFN008L20+                                                                    TCG
JMSF026K18-           CTTCTATGTTGGAATGTTTGCTGATTTAATTGATTATTTGTGAGCGACACGTTTCAATCG
                      ____________________________________________________________
consensus             CTTCTATGTTGGAATGTTTGCTGATTTAATTGATTATTTGTGAGCGACACGTTTCAATCG
 
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JMFN008L20+           CTTTCTATGAGCGACACGAGACAGCAGGCGGTGGCTTCTCTATATTTTTGTCTGCATCAG
JMSF026K18-           CTTTCTATGAGCGACACGAGACTACAGGCGGTGGCTTCTCTATATTTTTGTCTGCATCAG
                      ____________________________________________________________
consensus             CTTTCTATGAGCGACACGAGACTGCAGGCGGTGGCTTCTCTATATTTTTGTCTGCATCAG
 
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JMFN008L20+           ATTTCAATCTCAAAATTATCTGCATCGGAGCTTTTCTAGGGCTCCATCTCCTCTCGCCGG
JMSF026K18-           ATTTCATTCTCAAAATTATC----TCGGAGCTTTTCTAGGGCTCCATCTCCTCTCACC-G
                      ____________________________________________________________
consensus             ATTTCATTCTCAAAATTATCTGCATCGGAGCTTTTCTAGGGCTCCATCTCCTCTCGCCGG
 
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JMFN008L20+           AAGATCGAAGCCATGCCGAAAG                                      
JMSF026K18-           AAGATCGAAGCCATGCCGAAAGGGTCTTAAAGGATGGTTGGCTTGTTGGAGCAGCAGTTC
                      ____________________________________________________________
consensus             AAGATCGAAGCCATGCCGAAAGGGTCTTAAAGGATGGTTGGCTTGTTGGAGCAGCAGTTC
 
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JMSF026K18-           TTGGGTTTCCTGCTAAATCAACAATTAAAGAGGTAATCAAGCCCGAGTTGCTTAAGGGGT
                      ____________________________________________________________
consensus             TTGGGTTTCCTGCTAAATCAACAATTAAAGAGGTAATCAAGCCCGAGTTGCTTAAGGGGT
 
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JMSF026K18-           TTGCGCTTATCAATAGGTATAATCCATTACTAATTTGCGATGTGTTTTCAATGTTTTGAC
                      ____________________________________________________________
consensus             TTGCGCTTATCAATAGGTATAATCCATTACTAATTTGCGATGTGTTTTCAATGTTTTGAC
 
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JMSF026K18-           TAGAATTATAATCCATTCCACCATAGTTGGGCTTTCTAATTTCTGTATTTATACCACCAT
                      ____________________________________________________________
consensus             TAGAATTATAATCCATTCCACCATAGTTGGGCTTTCTAATTTCTGTATTTATACCACCAT
 
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JMSF026K18-           AGCCTTTAATTTGTCACCTCAATATCTTTTTGTGATGCTGTTTTAATATGCAGTCTACAT
                      ____________________________________________________________
consensus             AGCCTTTAATTTGTCACCTCAATATCTTTTTGTGATGCTGTTTTAATATGCAGTCTACAT
 
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JMSF026K18-           TACTGGAAGCTCTTATGCTAACATCAAGGTTACAACACCTGATGATATGCTGCTAGCTGA
                      ____________________________________________________________
consensus             TACTGGAAGCTCTTATGCTAACATCAAGGTTACAACACCTGATGATATGCTGCTAGCTGA
 
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JMSF026K18-           GAGAATATTGAACACGTGATTCAATTATGCATAATAAAATTGATCCCATATTTTGTATCC
                      ____________________________________________________________
consensus             GAGAATATTGAACACGTGATTCAATTATGCATAATAAAATTGATCCCATATTTTGTATCC