Contig 002267:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026I22Sequence395002267 (2)ref|XP_009778744.1|5e-06PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 isoform X1 [Nico648019332ref|XP_004252009.1|4e-47PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X1 [Solanum lycop
JMSF040P18Sequence628002267 (2)ref|XP_010112862.1|8e-18hypothetical protein L484_014712 [Morus notabilis] gb|EXC34985.1| hypothetical p859011252 (3)ref|XP_009629875.1|9e-73PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Nicotiana tom

Alignment

This contig is upended


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JMSF040P18+                                                  TTCTATGTGCTAAATTTTCAT
                      ____________________________________________________________
consensus                                                    TTCTATGTGCTAAATTTTCAT
 
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JMSF040P18+           ACTTGTCTCGGTAGTGTCTGTCAACATGGCGTGCATAGTCTCTGGAACGATGATCATTAT
                      ____________________________________________________________
consensus             ACTTGTCTCGGTAGTGTCTGTCAACATGGCGTGCATAGTCTCTGGAACGATGATCATTAT
 
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JMSF040P18+           CTCTCCTTGAATGATCTGAATAATGTTTATCTCTAGAGTCCCGGAGAGAATGAGAAGATG
                      ____________________________________________________________
consensus             CTCTCCTTGAATGATCTGAATAATGTTTATCTCTAGAGTCCCGGAGAGAATGAGAAGATG
 
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JMSF040P18+           ATTTTGAATAATATCTATCATCATTATCTTCATTCTTGCCAGGTCGTGAATAGTCATCAT
                      ____________________________________________________________
consensus             ATTTTGAATAATATCTATCATCATTATCTTCATTCTTGCCAGGTCGTGAATAGTCATCAT
 
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JMSF040P18+           GCTCAAGGTGCCTATGAGAACTTCTAGAAGATTGCTTATCAGAATGTTTACGTGACTCAC
                      ____________________________________________________________
consensus             GCTCAAGGTGCCTATGAGAACTTCTAGAAGATTGCTTATCAGAATGTTTACGTGACTCAC
 
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JMSF040P18+           TGCTCCTGGCCTGTTGTCTCCAGTCTCTACCTGAATCCCTTTCATCATCTGGCCTTCTGT
                      ____________________________________________________________
consensus             TGCTCCTGGCCTGTTGTCTCCAGTCTCTACCTGAATCCCTTTCATCATCTGGCCTTCTGT
 
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JMSF040P18+           GATCATCAACAGTTTTTTCAGGATTCTTCCTTCTTTGAATTGGACTGGAACTCCTACTAC
                      ____________________________________________________________
consensus             GATCATCAACAGTTTTTTCAGGATTCTTCCTTCTTTGAATTGGACTGGAACTCCTACTAC
 
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JMSF040P18+           GGACAGGACTACCGTCGGCTGATGCTGAGCCACCAACTGGAGACCGGCGCCGATATTTTC
JMSF026I22+                                    TGAGCCACCAACTGGAGACCGGCGCCGATATTTTC
                      ____________________________________________________________
consensus             GGACAGGACTACCGTCGGCTGATGCTGAGCCACCAACTGGAGACCGGCGCCGATATTTTC
 
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JMSF040P18+           GATTAGTTGTGTCGGTCGACAGCCTACGGAATGCACCTTTAGCATCAAATTGATCACCGG
JMSF026I22+           GATTAGTTGTGTCGGTCGACAGCCTACGGAATGCACCTTTAGCATCAAATTGATCACCGG
                      ____________________________________________________________
consensus             GATTAGTTGTGTCGGTCGACAGCCTACGGAATGCACCTTTAGCATCAAATTGATCACCGG
 
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JMSF040P18+           AAGATGTTTGTCCGTTTGAGTCCATGTTATAGCCAAAAACT                   
JMSF026I22+           AAGATGTTTGTCCGTTTGAGTCCATGTTATAGCCAAAAACTGAATCCACAAGTATTCCAC
                      ____________________________________________________________
consensus             AAGATGTTTGTCCGTTTGAGTCCATGTTATAGCCAAAAACTGAATCCACAAGTATTCCAC
 
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JMSF026I22+           AGCTAAAATTAAACATTCAAAACCAAGTTTTACAGGTTTACAATGTATATATCATATGAT
                      ____________________________________________________________
consensus             AGCTAAAATTAAACATTCAAAACCAAGTTTTACAGGTTTACAATGTATATATCATATGAT
 
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JMSF026I22+           CCGGAAGTTCATAAAAAAATGGATTAGACGAACGAACCTTNTGAGTTGTTCGCTTTTGTT
                      ____________________________________________________________
consensus             CCGGAAGTTCATAAAAAAATGGATTAGACGAACGAACCTTNTGAGTTGTTCGCTTTTGTT
 
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JMSF026I22+           TATTCCCTNGGCTCTGTATCCGACTTCCTGTTTAGGGTTTCGATTTCCGCTTTGAAAAGA
                      ____________________________________________________________
consensus             TATTCCCTNGGCTCTGTATCCGACTTCCTGTTTAGGGTTTCGATTTCCGCTTTGAAAAGA
 
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JMSF026I22+           AGCTGAAAATGGTAAATGAGTTCTGAAATATTTAAAATATTTCCTTTCAAATTTTCATTC
                      ____________________________________________________________
consensus             AGCTGAAAATGGTAAATGAGTTCTGAAATATTTAAAATATTTCCTTTCAAATTTTCATTC