Contig 002262:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044P07Sequence515002262 (11)ref|XP_009609092.1|9e-40PREDICTED: transcription factor bHLH149-like [Nicotiana tomentosiformis]579002262 (11)ref|XP_009609092.1|2e-33PREDICTED: transcription factor bHLH149-like [Nicotiana tomentosiformis]
JMFN004N22Sequence484002262 (11)ref|XP_009609092.1|8e-29PREDICTED: transcription factor bHLH149-like [Nicotiana tomentosiformis]
JMFN041H24Sequence626002262 (11)ref|XP_009609092.1|1e-36PREDICTED: transcription factor bHLH149-like [Nicotiana tomentosiformis]
JMSF022M08Sequence654002262 (11)ref|XP_009609092.1|3e-38PREDICTED: transcription factor bHLH149-like [Nicotiana tomentosiformis]787002262 (11)ref|XP_009609092.1|9e-81PREDICTED: transcription factor bHLH149-like [Nicotiana tomentosiformis]
JMSF026C17Sequence665002262 (11)ref|XP_010313623.1|4e-40PREDICTED: transcription factor bHLH149 [Solanum lycopersicum]814002262 (11)ref|XP_009609092.1|1e-80PREDICTED: transcription factor bHLH149-like [Nicotiana tomentosiformis]
JMSF027P12Sequence639002262 (11)ref|XP_009609092.1|3e-39PREDICTED: transcription factor bHLH149-like [Nicotiana tomentosiformis]735007137 (5)dbj|BAF00815.1|2e-73putative multispanning membrane protein [Arabidopsis thaliana]
JMSF031C01Sequence642002262 (11)ref|XP_009609092.1|2e-38PREDICTED: transcription factor bHLH149-like [Nicotiana tomentosiformis]693002262 (11)ref|XP_009609092.1|2e-79PREDICTED: transcription factor bHLH149-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF044P07-                                      GGTGAATAAACCAATAAATAAGATATTGTTAA
                      ____________________________________________________________
consensus                                         GGTGAATAAACCAATAAATAAGATATTGTTAA
 
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rJMFF044P07-          CCACAAATATAAATTTXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAGAAGAAGAAGAAGA
                      ____________________________________________________________
consensus             CCACAAATATAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAAGAAGAAGAAGA
 
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rJMFF044P07-          AGGTAGTGGCTAAAATGGAGGGAATATGGGGAGATCAAACGTGGAAAAGGGATTATGTAT
rJMSF031C01-                                                                  GTAT
rJMSF026C17-                                                                  GTAT
                      ____________________________________________________________
consensus             AGGTAGTGGCTAAAATGGAGGGAATATGGGGAGATCAAACGTGGAAAAGGGATTATGTAT
 
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rJMFF044P07-          ACCATAAAATAAAAGAAAATAAAATAAAAAATACAAGAAAATAAAAGAACTCTCAATTAT
rJMSF031C01-          ACAATAAAATAAAAGAAAATAAAATAAAAAATACAAGAAAATAAAAGAACTCTCAATTAT
rJMSF026C17-          ACAATAAAATAAAAGAAAATAAAAT-AAAAATACAAGAAAATAAAAGAACTCTCAATTAT
rJMSF022M08-                                          ACAAGAAAATAAAAGAACTCTCAATTAT
                      ____________________________________________________________
consensus             ACAATAAAATAAAAGAAAATAAAATAAAAAATACAAGAAAATAAAAGAACTCTCAATTAT
 
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rJMFF044P07-          TAACAAAAGATTCTAAAAATATAAAAATAAAAAATATAACACCTCAGCGCAGTCACGAGC
rJMSF031C01-          TAACAAAAGATTCTAAAAATATAAAAATAAAAAATATAACACCTCAGCGCAGTCACGAGC
rJMSF026C17-          TAACAAAAGATTCTAAAAATATAAAAATAAAAAATATAACACCTCAGCGCAGTCACGAGC
rJMSF022M08-          TAACAAAAGATTCTAAAAATATAAAAATAAAAAATATAACACCTCAGCGCAGTCACGAGC
                      ____________________________________________________________
consensus             TAACAAAAGATTCTAAAAATATAAAAATAAAAAATATAACACCTCAGCGCAGTCACGAGC
 
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rJMFF044P07-          CACTTAGCCAAGGCTTATGACTGTTCTGAGCCAAGCCGGTCGGGATTAGCCGGTAGTCCG
rJMSF031C01-          CACTTAGCCAAGGCTTATGACTGTTCTGAGCCAAGCCGGTCGGGATTAGCCGGTAGTCCG
rJMSF026C17-          CACTTAGCCAAGGCTTATGACTGTTCTGAGCCAAGCCGGTCGGGATTAGCCGGTAGTCCG
rJMSF022M08-          CACTTAGCCAAGGCTTATGACTGTTCTGAGCCAAGCCGGTCGGGATTAGCCGGTAGTCCG
                      ____________________________________________________________
consensus             CACTTAGCCAAGGCTTATGACTGTTCTGAGCCAAGCCGGTCGGGATTAGCCGGTAGTCCG
 
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rJMFF044P07-          ACTCCGGCACCGTTGAGAAGCCCTGTGAGAACGCTCATGGCTCTAACTTGCATCTCCAGA
rJMSF031C01-          ACTCCGGCACCGTTGAGAAGCCCTGTGAGAACGCTCATGGCTCTAACTTGCATCTCCAGA
rJMSF026C17-          ACTCCGGCACCGTTGAGAAGCCCTGTGAGAACGCTCATGGCTCTAACTTGCATCTCCAGA
rJMSF022M08-          ACTCCGGCACCGTTGAGAAGCCCTGTGAGAACGCTCATGGCTCTAACTTGCATCTCCAGA
                      ____________________________________________________________
consensus             ACTCCGGCACCGTTGAGAAGCCCTGTGAGAACGCTCATGGCTCTAACTTGCATCTCCAGA
 
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rJMFF044P07-          GCTGCAATATAATCAGTAGCTTCTTCTAGAAGATTCGGGAACGAGAGTTTCCGGCAACCG
rJMSF031C01-          GCTGCAATATAATCAGTAGCTTCTTCTAGAAGATTCGGGAACGAGAGTTTCCGGCAACCG
rJMSF026C17-          GCTGCAATATAATCAGTAGCTTCTTCTAGAAGATTCGGGAACGAGAGTTTCCGGCAACCG
rJMSF022M08-          GCTGCAATATAATCAGTAGCTTCTTCTAGAAGATTCGGGAACGAGAGTTTCCGGCAACCG
                      ____________________________________________________________
consensus             GCTGCAATATAATCAGTAGCTTCTTCTAGAAGATTCGGGAACGAGAGTTTCCGGCAACCG
 
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rJMFF044P07-          GGAACTAACCGCCCGAGAACTCGGGCCTTCCTTTGCAGCGGCGGCAACCTCTTCTTAGTC
rJMSF031C01-          GGAACTAACCGCCCGAGAACTCGGGCCTTCCTTTGCAGCGGCGGCAACCTCTTCTTAGTC
rJMSF026C17-          GGAACTAACCGCCCGAGAACTCGGGCCTTCCTTTGCAGCGGCGGCAACCTCTTCTTAGTC
rJMSF022M08-          GGAACTAACCGCCCGAGAACTCGGGCCTTCCTTTGCAGCGGCGGCAACCTCTTCTTAGTC
JMSF026C17+                                                                  TAGTC
                      ____________________________________________________________
consensus             GGAACTAACCGCCCGAGAACTCGGGCCTTCCTTTGCAGCGGCGGCAACCTCTTCTTAGTC
 
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rJMFF044P07-          GCCGGTTTCTTCGGCCGGATATCGCCGGCGGCTACCACCTTGGCTCTCTTATGCTTTTTG
rJMSF031C01-          GCCGGTTTCTTCGGCCGGATATCGCCGGCGGCTACCACCTTGGCTCTCTTATGCTTTTTG
rJMSF026C17-          GCCGGTTTCTTCGGCCGGATATCGCCGGCGGCTACCACCTTGGCTCTCTTATGCTTTTTG
rJMSF022M08-          GCCGGTTTCTTCGGCCGGATATCGCCGGCGGCTACCACCTTGGCTCTCTTATGCTTTTTG
JMSF022M08+                 TTCTTCGGCCGGATATCGCCGGCGGCTACCACCTNGGCTCTCTTATGCTTTTTG
JMSF031C01+                             ATATCGCCGGCGGCTACCACCTNGGCTCTCTTATGCTTTTTG
JMSF027P12+                                TCGCCGGCGGCTACCACCTTGGCTCTCTTATGCTTTTTG
JMFN041H24+                      CGGCCGGATATCGCCGGCGGCTACCACCTTGGCTCTCTTATGCTTTTGT
JMFF044P07+                 TTCTTCGGCCGGATATCGCCGGCGGCTACCACCTTGGCTCTCTTATGCTTTTTG
JMSF026C17+           GCCGGTTTCTTCGGCCGGATATCGCCGGCGGCTACCACCTTGGCTCTCTTATGCTTTTTG
                      ____________________________________________________________
consensus             GCCGGTTTCTTCGGCCGGATATCGCCGGCGGCTACCACCTTGGCTCTCTTATGCTTTTTG
 
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rJMFF044P07-          TTGATCT                                                     
rJMSF031C01-          TTGATCTGTCTGAGTCTCAAACTAAGCCGTCCGGTGAGAATCGCTCTGCTCCAGCGTGTC
rJMSF026C17-          TTGATCTGTCTGAGTCTCAAACTAAGCCGTCCGGTGAGAATCGCTCTGCTCCAGCGTGTC
rJMSF022M08-          TTGATCTGTCTGAGTCTCAAACTAAGCCGTCCGGTGAGAATCGCTCTGCTCCAGCGTGTC
JMSF022M08+           TTGATCTGTCTGAGTCTCAAACTAAGCCGTCCGGTGAGAATCGCTCTGCTCCAGCGTGTC
JMSF031C01+           TTGATCTGTCTGAGTCTCAAACTAAGCCGTCCGGTGAGAATCGCTCTGCTCCAGCGTGTC
JMSF027P12+           TTGATCTGTCTGAGTCTCAAACTAAGCCGTCCGGTGAGAATCGCTCTGCTCCAGCGTGTC
JMFN004N22+                                  AAGCCGTCCGGTGAGAATCGCTCTGCTCCAGCGTGTC
JMFN041H24+           GATTTCTGTCTGAGTCTCAAACTAAGCCGTCCGGTGAGAATCGCTCTGCTCCAGCGTGTC
JMFF044P07+           TTGATCTGTCTGAGTCTCAAACTAAGCCGTCCGGTGAGAATCGCTCTGCTCCAGCGTGTC
JMSF026C17+           TTGATCTGTCTGAGTCTCAAACTAAGCCGTCCGGTGAGAATCGCTCTGCTCCAGCGTGTC
                      ____________________________________________________________
consensus             TTGATCTGTCTGAGTCTCAAACTAAGCCGTCCGGTGAGAATCGCTCTGCTCCAGCGTGTC
 
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rJMSF031C01-          TTCCCCTTGGCGGCGACGGCGAGGACCTTGTCCGCAGTCTCCCGAACAGTGCGGCCAGCA
rJMSF026C17-          TTCCCCTTGGCGGCGACGGCGAGGACCTTGTCCGCAGTCTCCCGAACAGTGCGGCCAGCA
rJMSF022M08-          TTCCCCTTGGCGGCGACGGCGAGGACCTTGTCCGCAGTCTCCCGAACAGTGCGGCCAGCA
JMSF022M08+           TTCCCCTTGGCGGCGACGGCGAGGACCTTGTCCGCAGTCTCCCGAACAGTGCGGCCAGCA
JMSF031C01+           TTCCCCTTGGCGGCGACGGCGAGGACCTTGTCCGCAGTCTCCCGAACAGTGCGGCCAGCA
JMSF027P12+           TTCCCCTTGGCGGCGACGGCGAGGACCTTGTCCGCAGTCTCCCGAACAGTGCGGCCAGCA
JMFN004N22+           TTCCCCTTGGCGGCGACGGCGAGGACCTTGTCCGCAGTCTCCCGAACAGTGCGGCCAGCA
JMFN041H24+           TTCCCCTTGGCGGCGACGGCGAGGACCTTGTCCGCAGTCTCCCGAACAGTGCGGCCAGCA
JMFF044P07+           TTCCCCTTGGCGGCGACGGCGAGGACCTTGTCCGCAGTCTCCCGAACAGTGCGGCCAGCA
JMSF026C17+           TTCCCCTTGGCGGCGACGGCGAGGACCTTGTCCGCAGTCTCCCGAACAGTGCGGCCAGCA
                      ____________________________________________________________
consensus             TTCCCCTTGGCGGCGACGGCGAGGACCTTGTCCGCAGTCTCCCGAACAGTGCGGCCAGCA
 
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rJMSF031C01-          ACAGCGGGAGATGGCGCCTCATTTCTCCGGCGGACCTGACGGAGGGCCTCCAGAAGCTTC
rJMSF026C17-          ACAGCGGGAGATGGCGCCTCATTTCTCCGGCGGACCTGACGGAGGGCCTCCAGAAGCTTC
rJMSF022M08-          ACAGCGGGAGATGGCGCCTCATTTCTCCGGCGGACCTGACGGAGGGCCTCCAGAAGCTTC
JMSF022M08+           ACAGCGGGAGATGGCGCCTCATTTCTCCGGCGGACCTGACGGAGGGCCTCCAGAAGCTTC
JMSF031C01+           ACAGCGGGAGATGGCGCCTCATTTCTCCGGCGGACCTGACGGAGGGCCTCCAGAAGCTTC
JMSF027P12+           ACAGCGGGAGATGGCGCCTCATTTCTCCGGCGGACCTGACGGAGGGCCTCCAGAAGCTTC
JMFN004N22+           ACAGCGGGAGATGGCGCCTCATTTCTCCGGCGGACCTGACGGAGGGCCTCCAGAAGCTTC
JMFN041H24+           ACAGCGGGAGATGGCGCCTCATTTCTCCGGCGGACCTGACGGAGGGCCTCCAGAAGCTTC
JMFF044P07+           ACAGCGGGAGATGGCGCCTCATTTCTCCGGCGGACCTGACGGAGGGCCTCCAGAAGCTTC
JMSF026C17+           ACAGCGGGAGATGGCGCCTCATTTCTCCGGCGGACCTGACGGAGGGCCTCCAGAAGCTTC
                      ____________________________________________________________
consensus             ACAGCGGGAGATGGCGCCTCATTTCTCCGGCGGACCTGACGGAGGGCCTCCAGAAGCTTC
 
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rJMSF031C01-          GACGAGTAGATCTGCTGCTCGTCCTGGGTCCTCCACCTGAGTACATCGACGCCGGTAGGT
rJMSF026C17-          GACGAGTAGATCTGCTGCTCGTCCTGGGTCCTCCACCTGAGTACATCGACGCCGGTAGGT
rJMSF022M08-          GACGAGTAGATCTGCTGCTCGTCCTGGGTCCTCCACCTGAGTACATCGACGCCGGTAGGT
JMSF022M08+           GACGAGTAGATCTGCTGCTCGTCCTGGGTCCTCCACCTGAGTACATCGACGCCGGTAGGT
JMSF031C01+           GACGAGTAGATCTGCTGCTCGTCCTGGGTCCTCCACCTGAGTACATCGACGCCGGTAGGT
JMSF027P12+           GACGAGTAGATCTGCTGCTCGTCCTGGGTCCTCCACCTGAGTACATCGACGCCGGTAGGT
JMFN004N22+           GACGAGTAGATCTGCTGCTCGTCCTGGGTCCTCCACCTGAGTACATCGACGCCGGTAGGT
JMFN041H24+           GACGAGTAGATCTGCTGCTCGTCCTGGGTCCTCCACCTGAGTACATCGACGCCGGTAGGT
JMFF044P07+           GACGAGTAGATCTGCTGCTCGTCCTGGGTCCTCCACCTGAGTACATCGACGCCGGTAGGT
JMSF026C17+           GACGAGTAGATCTGCTGCTCGTCCTGGGTCCTCCACCTGAGTACATCGACGCCGGTAGGT
                      ____________________________________________________________
consensus             GACGAGTAGATCTGCTGCTCGTCCTGGGTCCTCCACCTGAGTACATCGACGCCGGTAGGT
 
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rJMSF031C01-          TGCGGCTGATTCTGGTCAGA                                        
rJMSF026C17-          TGCGGCTGATTCTGGTCAGACTCGCCGATTTTTCTCCGCTTTTTCCGCGATCGGTTGGAG
rJMSF022M08-          TGCGGCTGATTCTGGTCAGACTCGCCGATTTTTCTCCGCTTTTTCCGCGATCGGTTGGAG
JMSF022M08+           TGCGGCTGATTCTGGTCAGACTCGCCGATTTTTCTCCGCTTTTTCCGCGATCGGTTGGAG
JMSF031C01+           TGCGGCTGATTCTGGTCAGACTCGCCGATTTTTCTCCGCTTTTTCCGCGATCGGTTGGAG
JMSF027P12+           TGCGGCTGATTCTGGTCAGACTCGCCGATTTTTCTCCGCTTTTTCCGCGATCGGTTGGAG
JMFN004N22+           TGCGGCTGATTCTGGTCAGACTCGCCGATTTTTCTCCGCTTTTTCCGCGATCGGTTGGAG
JMFN041H24+           TGCGGCTGATTCTGGTCAGACTCGCCGATTTTTCTCCGCTTTTTCCGCGATCGGTTGGAG
JMFF044P07+           TGCGGCTGATTCTGGTCAGACTCGCCGATTTTTCTCCGCTTTTTCCGCGATCGGTTGGAG
JMSF026C17+           TGCGGCTGATTCTGGTCAGACTCGCCGATTTTTCTCCGCTTTTTCCGCGATCGGTTGGAG
                      ____________________________________________________________
consensus             TGCGGCTGATTCTGGTCAGACTCGCCGATTTTTCTCCGCTTTTTCCGCGATCGGTTGGAG
 
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rJMSF026C17-          TTGACATCGGGATTCGCTATCGAAGACGATAACTCCATCATTCTATCAATCAGTCAAGTT
rJMSF022M08-          TTGACATCGGGATTCGCTATCGAAGACGATAACTCCATCATTCTATCAATCAGTCANGTT
JMSF022M08+           TTGACATCGGGATTCGCTATCGAAGACGATAACTCCATCATTCTATCAATCAGTCAAGTT
JMSF031C01+           TTGACATCGGGATTCGCTATCGAAGACGATAACTCCATCATTCTATCAATCAGTCAAGTT
JMSF027P12+           TTGACATCGGGATTCGCTATCGAAGACGATAACTCCATCATTCTATCAATCAGTCAAGTT
JMFN004N22+           TTGACATCGGGATTCGCTATCGAAGACGATAACTCGATCATTCTATCAATCAGTCAAGTT
JMFN041H24+           TTGACATCGGGATTCGCTATCGAAGACGATAACTCCATCATTCTATCAATCAGTCAAGTT
JMFF044P07+           TTGACATCGGGATTCGCTATCGAAGACGATAACTCCATCATTCTATCAATCAGTCAAGTT
JMSF026C17+           TTGACATCGGGATTCGCTATCGAAGACGATAACTCCATCATTCTATCAATCAGTCAAGTT
                      ____________________________________________________________
consensus             TTGACATCGGGATTCGCTATCGAAGACGATAACTCCATCATTCTATCAATCAGTCAAGTT
 
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rJMSF026C17-          TATATGCACAGTACTCTGCCTCT                                     
rJMSF022M08-          TATATGCACAGTACTCTGCCTCTCTTCGTGGTATTGCAG                     
JMSF022M08+           TATATGCACAGTACTCTGCCTCTCTTCGTGGTATTGCAGGTTGAGAGAAGGATATATTGA
JMSF031C01+           TATATGCACAGTACTCTGCCTCTCTTCGTGGTATTGCAGGTTGAGAGAAGGATATATTGA
JMSF027P12+           TATATGCACAGTACTCTGCCTCTCTTCGTGGTATTGCAGGTTGAGAGAAGGATATATTGA
JMFN004N22+           TATATGCACAGTACTCTGCCTCTCTTCGTGGTATTGCAGGTTGAGAGAAGGATATATTGA
JMFN041H24+           TATATGCACAGTACTCTGCCTCTCTTCGTGGTATTGCAGGTTGAGAGAAGGATATATTGA
JMFF044P07+           TATATGCACAGTACTCTGCCTCTCTTCGTGGTATTGCAGGTTGAGAGAAGGATATATTGA
JMSF026C17+           TATATGCACAGTACTCTGCCTCTCTTCGTGGTATTGCAGGTTGAGAGAAGGATATATTGA
                      ____________________________________________________________
consensus             TATATGCACAGTACTCTGCCTCTCTTCGTGGTATTGCAGGTTGAGAGAAGGATATATTGA
 
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JMSF022M08+           AGATTCAAATGCTCCTTGCTTTGTTTACTCCGGCAGCGGCGGAATAGGTGGTGGCTGCGC
JMSF031C01+           AGATTCAAATGCTCCTTGCTTTGTTTACTCCGGCAGCGGCGGAATAGGTGGTGGCTGCGC
JMSF027P12+           AGATTCAAATGCTCCTTGCTTTGTTTACTCCGGCAGCGGCGGAATAGGTGGTGGCTGCGC
JMFN004N22+           AGATTCAAATGCTCCTTGCTTTGTTTACTCCGGCAGCGGCGGAATAGGTGGTGGCTGCGC
JMFN041H24+           AGATTCAAATGCTCCTTGCTTTGTTTACTCCGGCAGCGGCGGAATAGGTGGTGGCTGCGC
JMFF044P07+           AGATTCAAATG                                                 
JMSF026C17+           AGATTCAAATGCTCCTTGCTTTGTTTACTCCGGCAGCGGCGGAATAGGTGGTGGCTGCGC
                      ____________________________________________________________
consensus             AGATTCAAATGCTCCTTGCTTTGTTTACTCCGGCAGCGGCGGAATAGGTGGTGGCTGCGC
 
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JMSF022M08+           CGGTTGCGAATTGAGTAAAGGAAGGCTTGAACTGAAGAGAGAGAGAATGAGAGAGAGAGA
JMSF031C01+           CGGTTGCGAATTGAGTAAAGGAAGGCTTGAACTGAAGAGAGAGAGAATGAGAGAGAGAGA
JMSF027P12+           CGGTTGCGAATTGAGTAAAGGAAGGCTTGAACTGAAGAGAGAGAGAATGAGAGAGAGAGA
JMFN004N22+           CGGTTGCGAATTGAGTAAAGGAAGGCT                                 
JMFN041H24+           CGGTTGCGAATTGAGTAAAGGAAGGCTTGAACTGAAGAGAGAGAGAATGAGAGAGAGAGA
JMSF026C17+           CGGTTGCGAATTGAGTAAAGGAAGGCTTGAACTGAAGAGAGAGAGAATGAGAGAGAGAGA
                      ____________________________________________________________
consensus             CGGTTGCGAATTGAGTAAAGGAAGGCTTGAACTGAAGAGAGAGAGAATGAGAGAGAGAGA
 
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JMSF022M08+           GACGAATGGTGCGTTTTTGTAGTGGAAAAGAGGAGAGAGGGAGAGATAGAGAGAAGAACC
JMSF031C01+           GACGAATGGTGCGTTTTTGTAGTGGAAAAGAGGAGAGAGGGAGAGATAGAGAGAAGAACC
JMSF027P12+           GACGAATGGTGCGTTTTTGTAGTGGAAAAGAGGAGAGAGGGAGAGATAGAGAGAAGAACC
JMFN041H24+           GACGAATGGTGCGTTTTTGTAGTGGAAAAGAGGAGAG                       
JMSF026C17+           GACGAATGGTGCGTTTTTGTAGTGGAAAAGAGGAGAGAGGGAGAGATAGAGAGAACAACC
                      ____________________________________________________________
consensus             GACGAATGGTGCGTTTTTGTAGTGGAAAAGAGGAGAGAGGGAGAGATAGAGAGAAGAACC