Contig 002252:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF025E10Sequence404002252 (3)728020397ref|XP_006353466.1|6e-33PREDICTED: protein tesmin/TSO1-like CXC 5-like [Solanum tuberosum]
JMSF033J23Sequence409002252 (3)701007183 (2)ref|XP_006353466.1|6e-47PREDICTED: protein tesmin/TSO1-like CXC 5-like [Solanum tuberosum]
JMSF037H14Sequence342002252 (3)634007183 (2)ref|XP_006353466.1|2e-34PREDICTED: protein tesmin/TSO1-like CXC 5-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF033J23+                   GNTGNGNCCTNTTTGGNGGGNAATCCCCTCCCTCNCTTTTNTCCNTTCAAAA
                      ____________________________________________________________
consensus                     GNTGNGNCCTNTTTGGNGGGNAATCCCCTCCCTCNCTTTTNTCCNTTCAAAA
 
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JMSF033J23+           CNATAATAATTNGCCGCCGNAAAAAAAAATAAAAATACNCNGNTTAAATTAAATAACNCT
JMSF037H14+                               AAAAAAAAATAAAAATNCCCNGNTTAAATTAAATAACCCT
JMSF025E10+                               AAAAAAAAATAAAAATACNCNGNTTAAATTAAATAACNCT
                      ____________________________________________________________
consensus             CNATAATAATTNGCCGCCGNAAAAAAAAATAAAAATACCCNGNTTAAATTAAATAACCCT
 
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JMSF033J23+           TCACAGNTTCCCCACTCCGAAACTCCCAGAAATTCAAATTCCCAATTCCAAAACNGTATT
JMSF037H14+           TCNCNGNTTCCCCNCTCCGAAACTCCCNGAAATTCAAATTCCCAATTCCAAAACNGTATT
JMSF025E10+           TCACAGATTCCCCNCTCCGAAACTCCCNGAAATTCAAATTCCCAATTCCAAAACNGTATT
                      ____________________________________________________________
consensus             TCACAGATTCCCCACTCCGAAACTCCCAGAAATTCAAATTCCCAATTCCAAAACNGTATT
 
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JMSF033J23+           TGGAAATTTCAAATTCGATATCGAAACAGNGTCATCACTCATCACGCAGNTCAGATTCAA
JMSF037H14+           TGGAAATTTCAAATTCGATATNGAAACAGNGTCATCNCTCATCNCGCAGNTCAGNTTCAA
JMSF025E10+           TGGAAATTTCAAATTCGATATNGAAACAGTGTCATCACTCATCACGCAGNTCAGATTCAA
                      ____________________________________________________________
consensus             TGGAAATTTCAAATTCGATATCGAAACAGTGTCATCACTCATCACGCAGNTCAGATTCAA
 
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JMSF033J23+           AGGNG-AAAAAAAAAATCCTCCGAATGTCGGCTTCAAAATCTTCAGTTTATCGACCTCAA
JMSF037H14+           AGGGGAAAAAAAAAAATCCTCCGAATGTCGGCTTCAAAATCTTCAGTTTATCGACCTCAA
JMSF025E10+           AGGNG-AAAAAAAAAATCCTCCGAATGTCGGCTTCAAAATCTTCAGTTTATCGACCTCAA
                      ____________________________________________________________
consensus             AGGGG-AAAAAAAAAATCCTCCGAATGTCGGCTTCAAAATCTTCAGTTTATCGACCTCAA
 
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JMSF033J23+           TCTACTGAAAAATCGATCTATATAGCACACAAATACCCGCGCAAATCCTTGTATGCGTGT
JMSF037H14+           TCTACTGAAAAATCGATCTATATAGCACACAAATACCCGCGCAAATCCTTGTATGCGTGT
JMSF025E10+           TCTACTGAAAAATCGATCTATATAGCACACAAATACCCGCGCAAATCCTTGTATGCGTGT
                      ____________________________________________________________
consensus             TCTACTGAAAAATCGATCTATATAGCACACAAATACCCGCGCAAATCCTTGTATGCGTGT
 
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JMSF033J23+           GTATGTATATGCGGAGAGAGAAAATGAGGGATTTTCTGAAGAAGAGCAAGTAGGCTT   
JMSF037H14+           GTATGTATATGCGGAGAGAGAAAATGAGGGATTTTCTGAAGAAGAGCAAGTAGGCTT   
JMSF025E10+           GTATGTATATGCGGAGAGAGAAAATGAGGGATTTTCTGAAGAAGAGCAAGTAGGCTTGTC
                      ____________________________________________________________
consensus             GTATGTATATGCGGAGAGAGAAAATGAGGGATTTTCTGAAGAAGAGCAAGTAGGCTTGTC