Contig 002248:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS028B03Sequence653002248 (2)ref|XP_009785255.1|4e-33PREDICTED: rop guanine nucleotide exchange factor 14 [Nicotiana sylvestris] ref
JMSF024M06Sequence669002248 (2)ref|XP_009587339.1|6e-36PREDICTED: rop guanine nucleotide exchange factor 14 [Nicotiana tomentosiformis746016104ref|XP_009587339.1|1e-76PREDICTED: rop guanine nucleotide exchange factor 14 [Nicotiana tomentosiformis

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS028B03+                                                                 AGCTCA
JMSF024M06+                                                          TTTCCACAGCTCA
                      ____________________________________________________________
consensus                                                            TTTCCACAGCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS028B03+           CCAAAAACAGATGCTGAAAGACTTGATATGGCATTTGACAATGCGAGTGCGGTTGAAAGG
JMSF024M06+           CCAAAAACAGATGCTGAAAGACTTGATATGGCATTTGACAATGCGAGTGCGGTTGAAAGG
                      ____________________________________________________________
consensus             CCAAAAACAGATGCTGAAAGACTTGATATGGCATTTGACAATGCGAGTGCGGTTGAAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS028B03+           CCATTGGTGCCTCCCGTCATGTCCTCCCCGAGCAACAACTTCGAGAATTTCACTTTCATG
JMSF024M06+           CCATTGGTGCCTCCCGTCATGTCCTCCCCGAGCAACAACTTCGAGAATTTCACTTTCATG
                      ____________________________________________________________
consensus             CCATTGGTGCCTCCCGTCATGTCCTCCCCGAGCAACAACTTCGAGAATTTCACTTTCATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS028B03+           GCTTCCATATCGGAATACTCAAAGGTCTGCTGTGAAGCCACCGCCTTCTCCTTGACACCG
JMSF024M06+           GCTTCCATATCGGAATACTCAAAGGTCTGCTGTGAAGCCACCGCCTTCTCCTTGACACCG
                      ____________________________________________________________
consensus             GCTTCCATATCGGAATACTCAAAGGTCTGCTGTGAAGCCACCGCCTTCTCCTTGACACCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS028B03+           AAATGTTGAGGGCTCGCGGAGAATTCCCACGTTTCAGGTCCATGGCTGCTGTCCTTCTTC
JMSF024M06+           AAATGTTGAGGGCTCGCGGAGAATTCCCACGTTTCAGGTCCATGGCTGCTGTCCTTCTTC
                      ____________________________________________________________
consensus             AAATGTTGAGGGCTCGCGGAGAATTCCCACGTTTCAGGTCCATGGCTGCTGTCCTTCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS028B03+           ACCGTCGTCCTCTGAGACGAGAGCGACATGAAAGCCGTGTTGCTAGAAGTGCTGCTCGAA
JMSF024M06+           ACCGTCGTCCTCTGAGACGAGAGCGACATGAAAGCCGTGTTGCTAGAAGTGCTGCTCGAA
                      ____________________________________________________________
consensus             ACCGTCGTCCTCTGAGACGAGAGCGACATGAAAGCCGTGTTGCTAGAAGTGCTGCTCGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS028B03+           TCATCATCGAACAAGGAGTCGGTAACGCTTTTGTCACATCTGCTGGTGGAGCTTTCATTG
JMSF024M06+           TCATCATCGAACAAGGAGTCGGTAACGCTTTTGTCACATCTGCTGGTGGAGCTTTCATTG
                      ____________________________________________________________
consensus             TCATCATCGAACAAGGAGTCGGTAACGCTTTTGTCACATCTGCTGGTGGAGCTTTCATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS028B03+           TCATAGGACTGGTGGCTTTGCTTGATGCAGCTCTCAAGCCCATCATAAGTTTTAATCTTT
JMSF024M06+           TCATAGGACTGGTGGCTTTGCTTGATGCAGCTCTCAAGCCCATCATAAGTTTTAATCTTT
                      ____________________________________________________________
consensus             TCATAGGACTGGTGGCTTTGCTTGATGCAGCTCTCAAGCCCATCATAAGTTTTAATCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS028B03+           TGTTCATCAAAGTCAAAACTTATCTCTCTTTCTCTTGTACAACAGGCCAGTCTGCTTCTC
JMSF024M06+           TGTTCATCAAAGTCAAAACTTATCTCTCTTTCTCTTGTACAACAGGCCAGTCTGCTTCTC
                      ____________________________________________________________
consensus             TGTTCATCAAAGTCAAAACTTATCTCTCTTTCTCTTGTACAACAGGCCAGTCTGCTTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS028B03+           AGGAGAGTCATCCCTCCTCGTGAATAACAGATTCCTTCAAATACCAGACCTGGGTGATGA
JMSF024M06+           AGGAGAGTCATCCCTCCTCGTGAATAACAGATTCCTTCAAATAC----CCTGGGTGATGA
                      ____________________________________________________________
consensus             AGGAGAGTCATCCCTCCTCGTGAATAACAGATTCCTTCAAATACCAGACCTGGGTGATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS028B03+           GAAAATGGAGTTAACTCAAGAACACCTTCAAAATGCGACAGCGAAAAAGATCACCAATTC
JMSF024M06+           GAAAATGGAGTTAACTCAAGAACACCTTCAAAATGCGACAGCGAAAAAGATCACCAATTC
                      ____________________________________________________________
consensus             GAAAATGGAGTTAACTCAAGAACACCTTCAAAATGCGACAGCGAAAAAGATCACCAATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS028B03+           ACCATCAGCTTTCTAGAGAGAGAGAGAGAGATTGGGC                       
JMSF024M06+           ACCATCAGCTTTCTAGAGAGAGAGAGAGAGATTGGGCTTTGGGCGCGGAATGCGAGTGTC
                      ____________________________________________________________
consensus             ACCATCAGCTTTCTAGAGAGAGAGAGAGAGATTGGGCTTTGGGCGCGGAATGCGAGTGTC