Contig 002245:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024K09Sequence666002245 (9)gb|AAV88073.1|1e-80hypothetical protein 9 [Ipomoea batatas]668002245 (9)gb|AAV88073.1|4e-82hypothetical protein 9 [Ipomoea batatas]
JMSF024L09Sequence665002245 (9)gb|AAV88073.1|1e-80hypothetical protein 9 [Ipomoea batatas]692002245 (9)gb|AAV88073.1|3e-81hypothetical protein 9 [Ipomoea batatas]
JMSF025A09Sequence605002245 (9)gb|AAV88073.1|9e-89hypothetical protein 9 [Ipomoea batatas]696002245 (9)gb|AAV88073.1|3e-81hypothetical protein 9 [Ipomoea batatas]
JMSF029D23Sequence651002245 (9)gb|AAV88073.1|2e-88hypothetical protein 9 [Ipomoea batatas]671002245 (9)gb|AAV88073.1|4e-79hypothetical protein 9 [Ipomoea batatas]
JMSF038N24Sequence678002245 (9)gb|AAV88073.1|2e-88hypothetical protein 9 [Ipomoea batatas]712017231ref|XP_009763911.1|2e-50PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like [Nicotiana sylvestris

Alignment

This contig is upended


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rJMSF029D23-                                                             ATATCTGCA
rJMSF024L09-                                              TTTGACAGATTCACCATATCTGCA
rJMSF025A09-                                             ATTTGACAGATTCACCATATCTGCA
                      ____________________________________________________________
consensus                                                ATTTGACAGATTCACCATATCTGCA
 
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rJMSF029D23-          CAAGAAATGATGAGGGTAGTTAAAGATCACATTCCATTTTCTTCACAAGAATTTTGCAAT
rJMSF024L09-          CAAGAAATGATGAGGGTAGTTAAAGATCACATTCCATTTTCTTCACAAGAATTTTGCAAT
rJMSF025A09-          CAAGAAATGATGAGGGTAGTTAAAGATCACATTCCATTTTCTTCACAAGAATTTTGCAAT
rJMSF024K09-            AGAAATGATGAGGGTAGTTAAAGATCACATTCCATTTTCTTCACAAGAATTTTGCAAT
JMSF038N24+                                                     TCACAAGAATTTTGCAAT
JMSF024L09+                                                                TTGCAAT
JMSF024K09+                                                               TTTGCAAT
                      ____________________________________________________________
consensus             CAAGAAATGATGAGGGTAGTTAAAGATCACATTCCATTTTCTTCACAAGAATTTTGCAAT
 
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rJMSF029D23-          TTACATACCTCAGAAAGTGACTAAACTATTGAACCAAACAAAAATTCATTTTTTTTAGTC
rJMSF024L09-          TTACATACCTCAGAAAGTGACTAAACTATTGAACCAAACAAAAATTCATTTTTTTTAGTC
rJMSF025A09-          TTACATACCTCAGAAAGTGACTAAACTATTGAACCAAACAAAAATTCATTTTTTTTAGTC
rJMSF024K09-          TTACATACCTCAGAAAGTGACTAAACTATTGAACCAAACAAAAATTCATTTTTTTTAGTC
JMSF029D23+                    TCAGAAAGTGACTAAACTATTGAACCAAACAAAAATTCATTTTTTTTAGTC
JMSF025A09+                                                                  TAGTC
JMSF038N24+           TTACATACCTCAGAAAGTGACTAAACTATTGAACCAAACAAAAATTCATTTTTTTTAGTC
JMSF024L09+           TTACATACNTCAGAAAGTGACTAAACTATTGAACCAAACAAAAATTCATTTTTTTTAGTC
JMSF024K09+           TTACATACCTCAGAAAGTGACTAAACTATTGAACCAAACAAAAATTCATTTTTTTTAGTC
                      ____________________________________________________________
consensus             TTACATACCTCAGAAAGTGACTAAACTATTGAACCAAACAAAAATTCATTTTTTTTAGTC
 
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rJMSF029D23-          AAAACCCTTTTGGACCAGACTCCTTCAAATCCACAGGTTGCTCAGCCATGGAGAGGCAAT
rJMSF024L09-          AAAACCCTTTTGGACCAGACTCCTTCAAATCCACAGGTTGCTCAGCCATGGAGAGGCAAT
rJMSF025A09-          AAAACCCTTTTGGACCAGACTCCTTCAAATCCACAGGTTGCTCAGCCATGGAGAGGCAAT
rJMSF024K09-          AAAACCCTTTTGGACCAGACTCCTTCAAATCCACAGGTTGCTCAGCCATGGAGAGGCAAT
JMSF029D23+           AAAACCCTTTTGGACCAGACTCCTTCAAATCCACAGGTTGCTCAGCCATGGAGAGGCAAT
JMSF025A09+           AAAACCCTTTTGGACCAGACTCCTTCAAATCCACAGGTTGCTCAGCCATGGAGAGGCAAT
JMSF038N24+           AAAACCCTTTTGGACCAGACTCCTTCAAATCCACAGGTTGCTCAGCCATGGAGAGGCAAT
JMSF024L09+           AAAACCCTTTTGGACCAGACTCCTTCAAATCCACAGGTTGCTCAGCCATGGAGAGGCAAT
JMSF024K09+           AAAACCCTTTTGGACCAGACTCCTTCAAATCCACAGGTTGCTCAGCCATGGAGAGGCAAT
                      ____________________________________________________________
consensus             AAAACCCTTTTGGACCAGACTCCTTCAAATCCACAGGTTGCTCAGCCATGGAGAGGCAAT
 
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rJMSF029D23-          ACTTAGCAATTTCTCTGAACTTTGGCACACTCCTCAGGTCGACCTTAGTACCATCTTTGA
rJMSF024L09-          ACTTAGCAATTTCTCTGAACTTTGGCACACTCCTCAGGTCGACCTTAGTACCATCTTTGA
rJMSF025A09-          ACTTAGCAATTTCTCTGAACTTTGGCACACTCCTCAGGTCGACCTTAGTACCATCTTTGA
rJMSF024K09-          ACTTAGCAATTTCTCTGAACTTTGGCACACTCCTCAGGTCGACCTTAGTACCATCTTTGA
JMSF029D23+           ACTTAGCAATTTCTCTGAACTTTGGCACACTCCTCAGGTCGACCTTAGTACCATCTTTGA
JMSF025A09+           ACTTAGCAATTTCTCTGAACTTTGGCACACTCCTCAGGTCGACCTTAGTACCATCTTTGA
JMSF038N24+           ACTTAGCAATTTCTCTGAACTTTGGCACACTCCTCAGGTCGACCTTAGTACCATCTTTGA
JMSF024L09+           ACTTAGCAATTTCTCTGAACTTTGGCACACTCCTCAGGTCGACCTTAGTACCATCTTTGA
JMSF024K09+           ACTTAGCAATTTCTCTGAACTTTGGCACACTCCTCAGGTCGACCTTAGTACCATCTTTGA
                      ____________________________________________________________
consensus             ACTTAGCAATTTCTCTGAACTTTGGCACACTCCTCAGGTCGACCTTAGTACCATCTTTGA
 
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rJMSF029D23-          GAGTGATGACAATGTCACCCCACTCCCCGATGAACCTAGGCACGACCTGAACATCCTTGA
rJMSF024L09-          GAGTGATGACAATGTCACCCCACTCCCCGATGAACCTAGGCACGACCTGAACATCCTTGA
rJMSF025A09-          GAGTGATGACAATGTCACCCCACTCCCCGATGAACCTAGGCACGACCTGAACATCCTTGA
rJMSF024K09-          GAGTGATGACAATGTCACCCCACTCCCCGATGAACCTAGGCACGACCTGAACATCCTTGA
JMSF029D23+           GAGTGATGACAATGTCACCCCACTCCCCGATGAACCTAGGCACGACCTGAACATCCTTGA
JMSF025A09+           GAGTGATGACAATGTCACCCCACTCCCCGATGAACCTAGGCACGACCTGAACATCCTTGA
JMSF038N24+           GAGTGATGACAATGTCACCCCACTCCCCAATGAACCTAGGCACGACCTGAACATCCTTGA
JMSF024L09+           GAGTGATGACAATGTCACCCCACTCCCCGATGAACCTAGGCACGACCTGAACATCCTTGA
JMSF024K09+           GAGTGATGACAATGTCACCCCACTCCCCGATGAACCTAGGCACGACCTGAACATCCTTGA
                      ____________________________________________________________
consensus             GAGTGATGACAATGTCACCCCACTCCCCGATGAACCTAGGCACGACCTGAACATCCTTGA
 
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rJMSF029D23-          TGACTTTGTACGAGAAATCGCTTCTGTCCTGCCCAGTCAGGCCGGAGATCACGGTGACCC
rJMSF024L09-          TGACTTTGTACGAGAAATCGCTTCTGTCCTGCCCAGTCAGGCCGGAGATCACGGTGACCC
rJMSF025A09-          TGACTTTGTACGAGAAATCGCTTCTGTCCTGCCCAGTCAGGCCGGAGATCACGGTGACCC
rJMSF024K09-          TGACTTTGTACGAGAAATCGCTTCTGTCCTGCCCAGTCAGGCCGGAGATCACGGTGACCC
JMSF029D23+           TGACTTTGTACGAGAAATCGCTTCTGTCCTGCCCAGTCAGGCCGGAGATCACGGTGACCC
JMSF025A09+           TGACTTTGTACGAGAAATCGCTTCTGTCCTGCCCAGTCAGGCCGGAGATCACGGTGACCC
JMSF038N24+           TGACTTTGTACGAGAAATCGCTTCTGTCCTGCCCAGTCAGGCCGGAGATCACGGTGACCC
JMSF024L09+           TGACTTTGTACGAGAAATCGCTTCTGTCCTGCCCAGTCAGGCCGGAGATCACGGTGACCC
JMSF024K09+           TGACTTTGTACGAGAAATCGCTTCTGTCCTGCCCAGTCAGGCCGGAGATCACGGTGACCC
                      ____________________________________________________________
consensus             TGACTTTGTACGAGAAATCGCTTCTGTCCTGCCCAGTCAGGCCGGAGATCACGGTGACCC
 
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rJMSF029D23-          GCAGATTGGTGAATCTGTAGCGGAGAAAGAAGGCTCTGAAAACTGCGGCGAGAGTGAGCG
rJMSF024L09-          GCAGATTGGTGAATCTGTAGCGGAGAAAGAAGGCTCTGAAAACTGCGGCGAGAGTGAGCG
rJMSF025A09-          GCAGATTGGTGAATCTGTAGCGGAGAAAGAAGGCTCTGAAAACTGCGGCGAGAGTGAGCG
rJMSF024K09-          GCAGATTGGTGAATCTGTAGCGGAGAAAGAAGGCTCTGAAAACTGCGGCGAGAGTGAGCG
JMSF029D23+           GCAGATTGGTGAATCTGTAGCGGAGAAAGAAGGCTCTGAAAACTGCGGCGAGAGTGAGCG
JMSF025A09+           GCAGATTGGTGAATCTGTAGCGGAGAAAGAAGGCTCTGAAAACTGCGGCGAGAGTGAGCG
JMSF038N24+           GCAGATTGGTGAATCTGTAGCGGAGAAAGAAGGCTCTGAAAACTGCGGCGAGAGTGAGCG
JMSF024L09+           GCAGATTGGTGAATCTGTAGCGGAGAAAGAAGGCTCTGAAAACTGCGGCGAGAGTGAGCG
JMSF024K09+           GCAGATTGGTGAATCTGTAGCGGAGAAAGAAGGCTCTGAAAACTGCGGCGAGAGTGAGCG
                      ____________________________________________________________
consensus             GCAGATTGGTGAATCTGTAGCGGAGAAAGAAGGCTCTGAAAACTGCGGCGAGAGTGAGCG
 
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rJMSF029D23-          GCAGCCAGAGAAGAGTGAAACCCAGAAGGAGGTTGGCTACGAGGTCGCCGTAGTGGGCTC
rJMSF024L09-          GCAGCCAGAGAAGAGTGAAACCCAGAAGGAGGTTGGCTACGAGGTCGCCGTAGTGGGCTC
rJMSF025A09-          GCAGCCAGAGAAGAGTGAAACCCAGAAGGAGGTTGGCTACGAGGTCGCCGTAGTGGGCTC
rJMSF024K09-          GCAGCCAGAGAAGAGTGAAACCCAGAAGGAGGTTGGCTACGAGGTCGCCGTAGTGGGCTC
JMSF029D23+           GCAGCCAGAGAAGAGTGAAACCCAGAAGGAGGTTGGCTACGAGGTCGCCGTAGTGGGCTC
JMSF025A09+           GCAGCCAGAGAAGAGTGAAACCCAGAAGGAGGTTGGCTACGAGGTCGCCGTAGTGGGCTC
JMSF038N24+           GCAGCCAGAGAAGAGTGAAACCCAGAAGGAGGTTGGCTACGAGGTCGCCGTAGTGGGCTC
JMSF024L09+           GCAGCCAGAGAAGAGTGAAACCCAGAAGGAGGTTGGCTACGAGGTCGCCGTAGTGGGCTC
JMSF024K09+           GCAGCCAGAGAAGAGTGAAACCCAGAAGGAGGTTGGCTACGAGGTCGCCGTAGTGGGCTC
                      ____________________________________________________________
consensus             GCAGCCAGAGAAGAGTGAAACCCAGAAGGAGGTTGGCTACGAGGTCGCCGTAGTGGGCTC
 
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rJMSF029D23-          CGCCGTCGAAAAAGACGGTTTCTTGGGAGGATTTGGCGGTGGCGGCGGCGGCGGCGGATG
rJMSF024L09-          CGCCGTCGAAAAAGACGGTTTCTTGGGAGGATTTGGCGGTGGCGGCGGCGGCGGCGGATG
rJMSF025A09-          CGCCGTCGAAAAAGACGGTTTCTTGGGAGGATTTGGCGGTGGCGGCGGCGGCGGCGGATG
rJMSF024K09-          CGCCGTCGAAAAAGACGGTTTCTTGGGAGGATTTGGCGGTGGCGGCGGCGGCGGCGGATG
JMSF029D23+           CGCCGTCGAAAAAGACGGTTTCTTGGGAGGATTTGGCGGTGGCGGCGGCGGCGGCGGATG
JMSF025A09+           CGCCGTCGAAAAAGACGGTTTCTTGGGAGGATTTGGCGGTGGCGGCGGCGGCGGCGGATG
JMSF038N24+           CGCCGTCGAAAAAGACGGTTTCTTGGGAGGATTTGGCGGTGGCGGCGGCGGCGGCGGATG
JMSF024L09+           CGCCGTCGAAAAAGACGGTTTCTTGGGAGGATTTGGCGGTGGCGGCGGCGGCGGCGGATG
JMSF024K09+           CGCCGTCGAAAAAGACGGTTTCTTGGGAGGATTTGGCGGTGGCGGCGGCGGCGGCGGATG
                      ____________________________________________________________
consensus             CGCCGTCGAAAAAGACGGTTTCTTGGGAGGATTTGGCGGTGGCGGCGGCGGCGGCGGATG
 
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rJMSF029D23-          GCTTGGAGGAGACGTGGAGTCTGGTGATAGGTCTGGTGGATTTTGAGGCGTGGGAAGTGA
rJMSF024L09-          GCTTGGAGGAGACGTGGAGTCTGGTGATAGGTCTGGTGGATTTTGAGGCGTGGGAAGTGA
rJMSF025A09-          GCTTGGAGGAGACGTGGAGTCTGGTGATAGGTCTGGTGGATTTTGAGGCGTGGGAAGTGA
rJMSF024K09-          GCTTGGAGGAGACGTGGAGTCTGGTGATAGGTCTGGTGGATTTTGAGGCGTGGGAAGTGA
JMSF029D23+           GCTTGGAGGAGACGTGGAGTCTGGTGATAGGTCTGGTGGATTTTGAGGCGTGGGAAGTGA
JMSF025A09+           GCTTGGAGGAGACGTGGAGTCTGGTGATAGGTCTGGTGGATTTTGAGGCGTGGGAAGTGA
JMSF038N24+           GCTTGGAGGAGACGTGGAGTCTGGTGATAGGTCTGGTGGATTTTGAGGCGTGGGAAGTGA
JMSF024L09+           GCTTGGAGGAGACGTGGAGTCTGGTGATAGGTCTGGTGGATTTTGAGGCGTGGGAAGTGA
JMSF024K09+           GCTTGGAGGAGACGTGGAGTCTGGTGATAGGTCTGGTGGATTTTGAGGCGTGGGAAGTGA
                      ____________________________________________________________
consensus             GCTTGGAGGAGACGTGGAGTCTGGTGATAGGTCTGGTGGATTTTGAGGCGTGGGAAGTGA
 
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rJMSF029D23-          ATGGCGGGTTGGGAATTGCGCAAAGATAACGGTGGTGGTTGTGGNAGCTGATGGTGGTGG
rJMSF024L09-          ATGGCGGGTTGGGAATTGCGCAGAGATAACGGTGGTGGTTGTGGGAGCTGATGGTGGTGG
rJMSF025A09-          ATGGCGGGTTGGGAATTGCGCAGAGATAACGGTGGTGGTTGTGGGAGCTGATGGTGGTGG
rJMSF024K09-          ATGGCGGGTTGGGAATTGCGCAGAGATAACGGTGGTGGTTGTGGGAGCTGATGGTGGTGG
JMSF029D23+           ATGGCGGGTTGGGAATTGCGCAGAGATAACGGTGGTGGTTGTGGGAGCTGATGGTGGTGG
JMSF025A09+           ATGGCGGGTTGGGAATTGCGCAGAGATAACGGTGGTGGTTGTGGGAGCTGATGGTGGTGG
JMSF038N24+           ATGGCGGGTTGGGAATTGCGCAGAGATAACGGTGGTGGTTGTGGGAGCTGATGGTGGTGG
JMSF024L09+           ATGGCGGGTTGGGAATTGCGCAGAGATAACGGTGGTGGTTGTGGGAGCTGATGGTGGTGG
JMSF024K09+           ATGGCGGGTTGGGAATTGCGCAGAGATAACGGTGGTGGTTGTGGGAGCTGATGGTGGTGG
                      ____________________________________________________________
consensus             ATGGCGGGTTGGGAATTGCGCAGAGATAACGGTGGTGGTTGTGGGAGCTGATGGTGGTGG
 
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rJMSF029D23-          CG                                                          
rJMSF024L09-          CGGCCGGA                                                    
rJMSF025A09-          CGGCCGGA                                                    
rJMSF024K09-          CGGCCGGAGA                                                  
JMSF029D23+           CGGCCGGAGAGAGGAGTCGAGAGGCAGAGGTGGTGGCGGCCATGGCCGGTTTATCCGTTC
JMSF025A09+           CGGCCGGAGAGAGGAGTCGAGAGGCAGAGGTGGTGGCGGCCATGGCCGGTTTATCCGTTC
JMSF038N24+           CGGCCGGAGAGAGGAGTCGAGAGGCAGAGGTGGTGGCGGCCATGGCCGGTTTATCCGTTC
JMSF024L09+           CGGCCG--GAGAGGAGTCGAGAGGCAGAGGTGGTGGCGGCCATGGCCGGTTTATCCGTTC
JMSF024K09+           CGGCCG--GAGAGGAGTCGAGAGGCAGAGGTGGTGGCGGCCATGGCCGGTTTATCCGTTC
                      ____________________________________________________________
consensus             CGGCCGGAGAGAGGAGTCGAGAGGCAGAGGTGGTGGCGGCCATGGCCGGTTTATCCGTTC