Contig 002234:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004A12Sequence230002234 (2)ref|XP_008384730.1|6e-13PREDICTED: peroxidase 4-like isoform X2 [Malus domestica]413018107ref|XP_007009190.1|2e-11Disease resistance protein RPP8 [Theobroma cacao] gb|EOY18000.1| Disease resista
JMSF023F17Sequence690002234 (2)ref|XP_008384729.1|1e-98PREDICTED: peroxidase 4-like isoform X1 [Malus domestica]

Alignment

This contig is upended


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JMSF023F17+                                         TGATAAAGCAACCATATCCCTAGCAGAGAG
                      ____________________________________________________________
consensus                                           TGATAAAGCAACCATATCCCTAGCAGAGAG
 
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JMSF023F17+           ACCTTTGTTTTGGAACCTTGTGATGAGATTGTTGAGCGTTGCTGTCGGAGGTGGGATTAC
                      ____________________________________________________________
consensus             ACCTTTGTTTTGGAACCTTGTGATGAGATTGTTGAGCGTTGCTGTCGGAGGTGGGATTAC
 
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JMSF023F17+           ACCGCTGTTGGCTGCAGACAGGCTGGCTGTTTTGGAGTCTCTCCTTCCGAGTTTCACATT
                      ____________________________________________________________
consensus             ACCGCTGTTGGCTGCAGACAGGCTGGCTGTTTTGGAGTCTCTCCTTCCGAGTTTCACATT
 
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JMSF023F17+           CCAGTTTGGTCCTCCAAGCAAAACAACCGAGTCACGAGCAGCAATAGTGACAATATCTGC
                      ____________________________________________________________
consensus             CCAGTTTGGTCCTCCAAGCAAAACAACCGAGTCACGAGCAGCAATAGTGACAATATCTGC
 
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JMSF023F17+           ACAAGACACAACGCCTGGACATACTTTTTCAACTGCCGATTTGATGCTGTCAATGACATT
                      ____________________________________________________________
consensus             ACAAGACACAACGCCTGGACATACTTTTTCAACTGCCGATTTGATGCTGTCAATGACATT
 
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JMSF023F17+           GAACCCCCTAACAGAATTGTTGTTAGGACCAGCAGTTTTTTCTCCAGTAAAGGAAGAGGT
                      ____________________________________________________________
consensus             GAACCCCCTAACAGAATTGTTGTTAGGACCAGCAGTTTTTTCTCCAGTAAAGGAAGAGGT
 
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JMSF023F17+           ATCGTCTAGAAGAATGGATCCATCGCAACCTTGGACAAAGCAATCATGGAAGTGGAGGCG
                      ____________________________________________________________
consensus             ATCGTCTAGAAGAATGGATCCATCGCAACCTTGGACAAAGCAATCATGGAAGTGGAGGCG
 
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JMSF004A12+                GCGAAGCACCCATACGCTTTTCCTTGTTGACTGCAGATTTTACGACTGATTTTAC
JMSF023F17+           AAGGAGCGAAGCACCCATACGCTTTTCCTTGTTGACTGCAGATTTTACGACTGATTTTAC
                      ____________________________________________________________
consensus             AAGGAGCGAAGCACCCATACGCTTTTCCTTGTTGACTGCAGATTTTACGACTGATTTTAC
 
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JMSF004A12+           AGTAGCAAGCAACTTGGGACAACTCTTGGAGTAGAAATTGGTGGAGAGCTGCGCAGAAGT
JMSF023F17+           AGTAGCAAGCAACTTGGGACAACTCTTGGAGTAGAAATTGGTGGAGAGCTGCGCAGAAGT
                      ____________________________________________________________
consensus             AGTAGCAAGCAACTTGGGACAACTCTTGGAGTAGAAATTGGTGGAGAGCTGCGCAGAAGT
 
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JMSF004A12+           GCTACCCGACAACATGGAAATAACAAGAACAATCAAAACGACCATCATTCTTGCTCTTGT
JMSF023F17+           GCTACCCGACAACATGGAAATAACAAGAACAATCAAAACGACCATCATTCTTGCTCTTGT
                      ____________________________________________________________
consensus             GCTACCCGACAACATGGAAATAACAAGAACAATCAAAACGACCATCATTCTTGCTCTTGT
 
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JMSF004A12+           TGTCCAACAAGATGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAAAAGCAACC        
JMSF023F17+           TGTCCAACAAGATGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAAAAGCAACCATTGTACA
                      ____________________________________________________________
consensus             TGTCCAACAAGATGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAAAAGCAACCATTGTACA
 
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JMSF023F17+           AATCAAATGCAAACAAGGTTGTTTAGTAGATAATTAACGAGATAATAATGCGTGTGTATC
                      ____________________________________________________________
consensus             AATCAAATGCAAACAAGGTTGTTTAGTAGATAATTAACGAGATAATAATGCGTGTGTATC