Contig 002233:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023E08Sequence680002233 (2)ref|XP_006355400.1|6e-69PREDICTED: AMSH-like ubiquitin thioesterase 3-like [Solanum tuberosum]743012625 (2)ref|XP_011009866.1|3e-123PREDICTED: AMSH-like ubiquitin thioesterase 3 isoform X2 [Populus euphratica]
JMSF024I17Sequence681002233 (2)ref|XP_006355400.1|1e-69PREDICTED: AMSH-like ubiquitin thioesterase 3-like [Solanum tuberosum]773012625 (2)ref|XP_011009857.1|5e-124PREDICTED: AMSH-like ubiquitin thioesterase 3 isoform X1 [Populus euphratica]

Alignment

This contig is upended


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JMSF024I17+                                                  GAAGAGGTAAAGAGAGAGATA
JMSF023E08+                                                   AAGAGGTAAAGAGAGAGATA
                      ____________________________________________________________
consensus                                                    GAAGAGGTAAAGAGAGAGATA
 
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JMSF024I17+           GCTTTNGGAACTGCAAGTCTATGGAATTCAATGATGAAACTTGAGGGTGATCATTGTTCT
JMSF023E08+           GCTTTNGGAACTGCAAGTCTATGGAATTCAATGATGAAACTTGAGGGTGATCATTGTTCT
                      ____________________________________________________________
consensus             GCTTTNGGAACTGCAAGTCTATGGAATTCAATGATGAAACTTGAGGGTGATCATTGTTCT
 
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JMSF024I17+           GCTTCCATGAAGAAGTTGTGCTGCTGACAGCCCACTTATTGTCATAGCCTGAAGATGCTT
JMSF023E08+           GCTCCCATGAAGAAGTTGTGCTGCTGACAGCCCACTTATTGTCATAGCCTGAAGATGCTT
                      ____________________________________________________________
consensus             GCTTCCATGAAGAAGTTGTGCTGCTGACAGCCCACTTATTGTCATAGCCTGAAGATGCTT
 
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JMSF024I17+           TATTGTCCAATGCGGGCCGCCCTAAAGAATTCCTTGATGATACAGTTGGAGTAATTTCGG
JMSF023E08+           TATTGTCCAATGCGGGCCGCCCTAAAGAATTCCTTGATGATACAGTTGGAGTAATTTCGG
                      ____________________________________________________________
consensus             TATTGTCCAATGCGGGCCGCCCTAAAGAATTCCTTGATGATACAGTTGGAGTAATTTCGG
 
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JMSF024I17+           AACACTCAAGTTGATAAGGTTGAGCTGTCACTTGACGTTTTTCCAGTTCATTCACTTGAC
JMSF023E08+           AACACTCAAGTTGATAAGGTTGAGCTGTCACTTGACGTTTTTCCAGTTCATTCACTTGAC
                      ____________________________________________________________
consensus             AACACTCAAGTTGATAAGGTTGAGCTGTCACTTGACGTTTTTCCAGTTCATTCACTTGAC
 
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JMSF024I17+           GTAGGAACGTTGGCTTTAGAGCCTCTAGCTCATCTAGCACTCTTAAAAGTGTCTTTCTTG
JMSF023E08+           GTAGGAACGTTGGCTTTAGAGCCTCTAGCTCATCTAGCACTCTTAAAAGTGTCTTTCTTG
                      ____________________________________________________________
consensus             GTAGGAACGTTGGCTTTAGAGCCTCTAGCTCATCTAGCACTCTTAAAAGTGTCTTTCTTG
 
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JMSF024I17+           AAGATGTTCTTTCTTTTGGATACAGAGCCAGGTAATCTCGATGGCAGGGTATAGTTTCAG
JMSF023E08+           AAGATGTTCTTTCTTTTGGATACAGAGCCAGGTAATCTCGATGGCAGGGTATAGTTTCAG
                      ____________________________________________________________
consensus             AAGATGTTCTTTCTTTTGGATACAGAGCCAGGTAATCTCGATGGCAGGGTATAGTTTCAG
 
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JMSF024I17+           TCAACAAACTGGAATATCTAAGCAGCATTATATACAAATCAATAATGTTCTTCTCTCCCC
JMSF023E08+           TCAACAAACTGGAATATCTAAGCAGCATTATATACAAATCAATAATGTTCTTCTCTCCCC
                      ____________________________________________________________
consensus             TCAACAAACTGGAATATCTAAGCAGCATTATATACAAATCAATAATGTTCTTCTCTCCCC
 
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JMSF024I17+           GGTAGATATTTGCCTGCCGGAGTATATTATCCGCGATCCGATAGTAATTGCGAAGTGGTA
JMSF023E08+           GGTAGATATTTGCCTGCCGGAGTATATTATCCGCGATCCGATAGTAATTGCGAAGTGGTA
                      ____________________________________________________________
consensus             GGTAGATATTTGCCTGCCGGAGTATATTATCCGCGATCCGATAGTAATTGCGAAGTGGTA
 
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JMSF024I17+           TTCGATTGTCGACGTCGACCTTCCGGGTCATGACACTGACGTTGATCGACGGCCGACTCA
JMSF023E08+           TTCGATTGTCGACGTCGACCTTCCGGGTCATGACACTGACGTTGATCGACGGCCGACTCA
                      ____________________________________________________________
consensus             TTCGATTGTCGACGTCGACCTTCCGGGTCATGACACTGACGTTGATCGACGGCCGACTCA
 
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JMSF024I17+           TGTTTAAGGACTCCGAATAATACCGAAGTTAATTTCCCGGTTAATATACGGCGAGTTTAA
JMSF023E08+           TGTTTAAGGACTCCGAATAATACCGAAGTTAATTTCCCGGTTAATATACGGCGAGTTTAA
                      ____________________________________________________________
consensus             TGTTTAAGGACTCCGAATAATACCGAAGTTAATTTCCCGGTTAATATACGGCGAGTTTAA
 
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JMSF024I17+           GGTAGCCTGGCCGCAAAGACTTGAGCAGAAACTAATTTGGTTTAATTTGCCTCTCTGTT 
JMSF023E08+           GGTAGCCTGGCCGCAAAGACTTGAGCAGAAACTAATTTGGTTTAATTTGCCTCTCTGTTG
                      ____________________________________________________________
consensus             GGTAGCCTGGCCGCAAAGACTTGAGCAGAAACTAATTTGGTTTAATTTGCCTCTCTGTTG