Contig 002229:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS080H05Sequence615002229 (2)ref|XP_008221484.1|1e-85PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Prunus mume
JMSF023C10Sequence679002229 (2)emb|CDP00236.1|2e-36unnamed protein product [Coffea canephora]802013904 (2)ref|XP_007044457.1|3e-74WRKY domain class transcription factor [Theobroma cacao] gb|EOY00289.1| WRKY dom

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS080H05+ GTCAGACCGATCCAGACCATGGCCA
                      ____________________________________________________________
consensus GTCAGACCGATCCAGACCATGGCCA
 
. : . : . : . : . : . :
JMFS080H05+ TGGTCTGCATGCAAAGCATTGGCCCTCTTTTCAGCAGGCCTTCCCGTGATCATAGGAGCT
                      ____________________________________________________________
consensus TGGTCTGCATGCAAAGCATTGGCCCTCTTTTCAGCAGGCCTTCCCGTGATCATAGGAGCT
 
. : . : . : . : . : . :
JMFS080H05+ ATTTTATCATCACGACGCAAGATATGAGTTCTATTGACTGAAGCTGTTGCTGATGTATCC
                      ____________________________________________________________
consensus ATTTTATCATCACGACGCAAGATATGAGTTCTATTGACTGAAGCTGTTGCTGATGTATCC
 
. : . : . : . : . : . :
JMFS080H05+ GGTAAAAAATTGGCGAACTCCACAAGCAAGTCAGTGTGTTCATGAAGAAGAGAAGAAACC
                      ____________________________________________________________
consensus GGTAAAAAATTGGCGAACTCCACAAGCAAGTCAGTGTGTTCATGAAGAAGAGAAGAAACC
 
. : . : . : . : . : . :
JMFS080H05+ TCTTGGTAAACCTCTGAGATTGATTTGTTTTCCTTTCTATACATATTCAGAATGTCAAGG
                      ____________________________________________________________
consensus TCTTGGTAAACCTCTGAGATTGATTTGTTTTCCTTTCTATACATATTCAGAATGTCAAGG
 
. : . : . : . : . : . :
JMFS080H05+ AAACATTTATATACAGAATCATCACCTTGAAATCTAGTCTTTATCTTGTTTACAAAACAT
                      ____________________________________________________________
consensus AAACATTTATATACAGAATCATCACCTTGAAATCTAGTCTTTATCTTGTTTACAAAACAT
 
. : . : . : . : . : . :
JMFS080H05+ ATTGCTTCTTCAAATTCAACAGGTTTTTTGATTGGAGGTGGTTGTAGTTCATCATCAGAT
                      ____________________________________________________________
consensus ATTGCTTCTTCAAATTCAACAGGTTTTTTGATTGGAGGTGGTTGTAGTTCATCATCAGAT
 
. : . : . : . : . : . :
JMFS080H05+ TGAAGGGTGATCTCATATCCCTTTGGCAAAAAGGTATTAAATCCCAAAATTAGGTTTTGA
JMSF023C10+ TCCCAAAATTAGGTTTTGA
                      ____________________________________________________________
consensus TGAAGGGTGATCTCATATCCCTTTGGCAAAAAGGTATTAAATCCCAAAATTAGGTTTTGA
 
. : . : . : . : . : . :
JMFS080H05+ TGCCCTTTAAACAGATCCTTCACCCTTGCTATGACACCAGATGTGTCAACTCTTTGAGCC
JMSF023C10+ TGCCCTTTAAACAGATCCTTCACCCTTGCTATGACACCAGATGTGTCAACTCTTTGAGCC
                      ____________________________________________________________
consensus TGCCCTTTAAACAGATCCTTCACCCTTGCTATGACACCAGATGTGTCAACTCTTTGAGCC
 
. : . : . : . : . : . :
JMFS080H05+ TTGAAATCTTTCATAACTTCAAGAAACTCATCATATTTGTCTCTTTTGTCTCGAAAGATG
JMSF023C10+ TTGAAATCTTTCATAACTTCAAGAAACTCATCATATTTGTCTCTTTTGTCTCGAAAGATG
                      ____________________________________________________________
consensus TTGAAATCTTTCATAACTTCAAGAAACTCATCATATTTGTCTCTTTTGTCTCGAAAGATG
 
. : . : . : . : . : . :
JMFS080H05+ TCCTTCACATTCTTGAGATATGCAAGGGCATCACTTGTTGTTAGCTT
JMSF023C10+ TCCTTCACATTCTTGAGATATGCAAGGGCATCACTTGTTGTTAGCTTCTGCATGCCGTTT
                      ____________________________________________________________
consensus TCCTTCACATTCTTGAGATATGCAAGGGCATCACTTGTTGTTAGCTTCTGCATGCCGTTT
 
. : . : . : . : . : . :
JMSF023C10+ CCACTCATCATCTGCTGTTGCACAGGCAGTTCAGCACGAGAGGAGTTAGTAGGGCGTTTA
                      ____________________________________________________________
consensus CCACTCATCATCTGCTGTTGCACAGGCAGTTCAGCACGAGAGGAGTTAGTAGGGCGTTTA
 
. : . : . : . : . : . :
JMSF023C10+ ACAGGGCTCATGTACAGTTCATCTCCAGACCTCTTCATCCTTCTCCGTTAATTAACTCCG
                      ____________________________________________________________
consensus ACAGGGCTCATGTACAGTTCATCTCCAGACCTCTTCATCCTTCTCCGTTAATTAACTCCG
 
. : . : . : . : . : . :
JMSF023C10+ TTACTCCTCACAAAATCATGCTTTTATTTCACTCTAATAAAAACACTCGAATTAACAGCA
                      ____________________________________________________________
consensus TTACTCCTCACAAAATCATGCTTTTATTTCACTCTAATAAAAACACTCGAATTAACAGCA
 
. : . : . : . : . : . :
JMSF023C10+ TAATCAAAATCCGAGAGAGATCTTCCAATGCACCGAGAAGCTTCGAATTCTGGAGCGAAG
                      ____________________________________________________________
consensus TAATCAAAATCCGAGAGAGATCTTCCAATGCACCGAGAAGCTTCGAATTCTGGAGCGAAG
 
. : . : . : . : . : . :
JMSF023C10+ GAACACACACAGAGCTTCGAACTTCGAAAACAGTATCTGTACGTAAAGAATTTTCGTTTT
                      ____________________________________________________________
consensus GAACACACACAGAGCTTCGAACTTCGAAAACAGTATCTGTACGTAAAGAATTTTCGTTTT
 
. : . : . : . : . : . :
JMSF023C10+ ATTCAATTTTTTTTTATTAATTTGCTTTCACGTATATGTATGGTGAGCTCTTCTGTGTGG
                      ____________________________________________________________
consensus ATTCAATTTTTTTTTATTAATTTGCTTTCACGTATATGTATGGTGAGCTCTTCTGTGTGG
 
. : . : . : . : . : . :
JMSF023C10+ AGCAGACAGAAAGAGAAAGGAGAGAGAGAGGAGAGAGAGAGAGATTGTATGTATACATGT
                      ____________________________________________________________
consensus AGCAGACAGAAAGAGAAAGGAGAGAGAGAGGAGAGAGAGAGAGATTGTATGTATACATGT
 
. : . : . : . : . : . :
JMSF023C10+ ATGTATCGCCTTAGCTGTATGTATCTATGTGAGGGGAAATCGCTATAGACAGCACCGCCC
                      ____________________________________________________________
consensus ATGTATCGCCTTAGCTGTATGTATCTATGTGAGGGGAAATCGCTATAGACAGCACCGCCC