Contig 002229:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS080H05Sequence615002229 (2)ref|XP_008221484.1|1e-85PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Prunus mume
JMSF023C10Sequence679002229 (2)emb|CDP00236.1|2e-36unnamed protein product [Coffea canephora]802013904 (2)ref|XP_007044457.1|3e-74WRKY domain class transcription factor [Theobroma cacao] gb|EOY00289.1| WRKY dom

Alignment

This contig is upended


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JMFS080H05+                                              GTCAGACCGATCCAGACCATGGCCA
                      ____________________________________________________________
consensus                                                GTCAGACCGATCCAGACCATGGCCA
 
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JMFS080H05+           TGGTCTGCATGCAAAGCATTGGCCCTCTTTTCAGCAGGCCTTCCCGTGATCATAGGAGCT
                      ____________________________________________________________
consensus             TGGTCTGCATGCAAAGCATTGGCCCTCTTTTCAGCAGGCCTTCCCGTGATCATAGGAGCT
 
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JMFS080H05+           ATTTTATCATCACGACGCAAGATATGAGTTCTATTGACTGAAGCTGTTGCTGATGTATCC
                      ____________________________________________________________
consensus             ATTTTATCATCACGACGCAAGATATGAGTTCTATTGACTGAAGCTGTTGCTGATGTATCC
 
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JMFS080H05+           GGTAAAAAATTGGCGAACTCCACAAGCAAGTCAGTGTGTTCATGAAGAAGAGAAGAAACC
                      ____________________________________________________________
consensus             GGTAAAAAATTGGCGAACTCCACAAGCAAGTCAGTGTGTTCATGAAGAAGAGAAGAAACC
 
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JMFS080H05+           TCTTGGTAAACCTCTGAGATTGATTTGTTTTCCTTTCTATACATATTCAGAATGTCAAGG
                      ____________________________________________________________
consensus             TCTTGGTAAACCTCTGAGATTGATTTGTTTTCCTTTCTATACATATTCAGAATGTCAAGG
 
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JMFS080H05+           AAACATTTATATACAGAATCATCACCTTGAAATCTAGTCTTTATCTTGTTTACAAAACAT
                      ____________________________________________________________
consensus             AAACATTTATATACAGAATCATCACCTTGAAATCTAGTCTTTATCTTGTTTACAAAACAT
 
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JMFS080H05+           ATTGCTTCTTCAAATTCAACAGGTTTTTTGATTGGAGGTGGTTGTAGTTCATCATCAGAT
                      ____________________________________________________________
consensus             ATTGCTTCTTCAAATTCAACAGGTTTTTTGATTGGAGGTGGTTGTAGTTCATCATCAGAT
 
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JMFS080H05+           TGAAGGGTGATCTCATATCCCTTTGGCAAAAAGGTATTAAATCCCAAAATTAGGTTTTGA
JMSF023C10+                                                    TCCCAAAATTAGGTTTTGA
                      ____________________________________________________________
consensus             TGAAGGGTGATCTCATATCCCTTTGGCAAAAAGGTATTAAATCCCAAAATTAGGTTTTGA
 
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JMFS080H05+           TGCCCTTTAAACAGATCCTTCACCCTTGCTATGACACCAGATGTGTCAACTCTTTGAGCC
JMSF023C10+           TGCCCTTTAAACAGATCCTTCACCCTTGCTATGACACCAGATGTGTCAACTCTTTGAGCC
                      ____________________________________________________________
consensus             TGCCCTTTAAACAGATCCTTCACCCTTGCTATGACACCAGATGTGTCAACTCTTTGAGCC
 
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JMFS080H05+           TTGAAATCTTTCATAACTTCAAGAAACTCATCATATTTGTCTCTTTTGTCTCGAAAGATG
JMSF023C10+           TTGAAATCTTTCATAACTTCAAGAAACTCATCATATTTGTCTCTTTTGTCTCGAAAGATG
                      ____________________________________________________________
consensus             TTGAAATCTTTCATAACTTCAAGAAACTCATCATATTTGTCTCTTTTGTCTCGAAAGATG
 
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JMFS080H05+           TCCTTCACATTCTTGAGATATGCAAGGGCATCACTTGTTGTTAGCTT             
JMSF023C10+           TCCTTCACATTCTTGAGATATGCAAGGGCATCACTTGTTGTTAGCTTCTGCATGCCGTTT
                      ____________________________________________________________
consensus             TCCTTCACATTCTTGAGATATGCAAGGGCATCACTTGTTGTTAGCTTCTGCATGCCGTTT
 
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JMSF023C10+           CCACTCATCATCTGCTGTTGCACAGGCAGTTCAGCACGAGAGGAGTTAGTAGGGCGTTTA
                      ____________________________________________________________
consensus             CCACTCATCATCTGCTGTTGCACAGGCAGTTCAGCACGAGAGGAGTTAGTAGGGCGTTTA
 
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JMSF023C10+           ACAGGGCTCATGTACAGTTCATCTCCAGACCTCTTCATCCTTCTCCGTTAATTAACTCCG
                      ____________________________________________________________
consensus             ACAGGGCTCATGTACAGTTCATCTCCAGACCTCTTCATCCTTCTCCGTTAATTAACTCCG
 
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JMSF023C10+           TTACTCCTCACAAAATCATGCTTTTATTTCACTCTAATAAAAACACTCGAATTAACAGCA
                      ____________________________________________________________
consensus             TTACTCCTCACAAAATCATGCTTTTATTTCACTCTAATAAAAACACTCGAATTAACAGCA
 
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JMSF023C10+           TAATCAAAATCCGAGAGAGATCTTCCAATGCACCGAGAAGCTTCGAATTCTGGAGCGAAG
                      ____________________________________________________________
consensus             TAATCAAAATCCGAGAGAGATCTTCCAATGCACCGAGAAGCTTCGAATTCTGGAGCGAAG
 
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JMSF023C10+           GAACACACACAGAGCTTCGAACTTCGAAAACAGTATCTGTACGTAAAGAATTTTCGTTTT
                      ____________________________________________________________
consensus             GAACACACACAGAGCTTCGAACTTCGAAAACAGTATCTGTACGTAAAGAATTTTCGTTTT
 
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JMSF023C10+           ATTCAATTTTTTTTTATTAATTTGCTTTCACGTATATGTATGGTGAGCTCTTCTGTGTGG
                      ____________________________________________________________
consensus             ATTCAATTTTTTTTTATTAATTTGCTTTCACGTATATGTATGGTGAGCTCTTCTGTGTGG
 
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JMSF023C10+           AGCAGACAGAAAGAGAAAGGAGAGAGAGAGGAGAGAGAGAGAGATTGTATGTATACATGT
                      ____________________________________________________________
consensus             AGCAGACAGAAAGAGAAAGGAGAGAGAGAGGAGAGAGAGAGAGATTGTATGTATACATGT
 
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JMSF023C10+           ATGTATCGCCTTAGCTGTATGTATCTATGTGAGGGGAAATCGCTATAGACAGCACCGCCC
                      ____________________________________________________________
consensus             ATGTATCGCCTTAGCTGTATGTATCTATGTGAGGGGAAATCGCTATAGACAGCACCGCCC