| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006G14 | Sequence | 488 | 002225 (4) | ref|XP_009589638.1| | 4e-16 | PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana tomentosiformis] | 741 | 001074 (5) | ref|XP_009804899.1| | 9e-86 | PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana sylvestris] |
| JMFF008D21 | Sequence | 590 | 002225 (4) | ref|XP_009589638.1| | 3e-26 | PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana tomentosiformis] | 720 | 001074 (5) | ref|XP_009804899.1| | 3e-58 | PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana sylvestris] |
| JMFF013K20 | Sequence | 480 | 002225 (4) | ref|XP_009589638.1| | 4e-17 | PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana tomentosiformis] | 659 | 001074 (5) | ref|XP_009589638.1| | 2e-53 | PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana tomentosiformis] |
| JMSF022K16 | Sequence | 686 | 002225 (4) | ref|XP_009589638.1| | 2e-39 | PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana tomentosiformis] | 816 | 001074 (5) | ref|XP_009804899.1| | 7e-81 | PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF022K16+ TGATGGTTCCGGTTGATACCTTGACG
____________________________________________________________
consensus TGATGGTTCCGGTTGATACCTTGACG
. : . : . : . : . : . :
JMFF008D21+ TGATAGAGTCGTATGC
JMSF022K16+ GTTATTGACGCCTTTCACGAACAAAACGACGTCGTTCTCGGTCGTGATAGAGTCGTATGC
____________________________________________________________
consensus GTTATTGACGCCTTTCACGAACAAAACGACGTCGTTCTCGGTCGTGATAGAGTCGTATGC
. : . : . : . : . : . :
JMFF008D21+ CAGAAAATTCCACTGGAGTAGAGGCGGTTGTGAATTTTTCGGGGAAGAAGTGAAATTGAT
JMSF022K16+ CAGAAAATTCCACTGGAGTAGAGGCGGTTGTGAATTTTTCGGGGAAGAAGTGAAATTGAT
____________________________________________________________
consensus CAGAAAATTCCACTGGAGTAGAGGCGGTTGTGAATTTTTCGGGGAAGAAGTGAAATTGAT
. : . : . : . : . : . :
JMFF008D21+ CAGAGAAGACGAGAGAGTCAAAATCGGCTGCTTCGTCACCTTTCTCCGGCGAGCGTTCCC
JMFF006G14+ CCC
JMFF013K20+ CCC
JMSF022K16+ CAGAGAAGACGAGAGAGTCAAAATCGGCTGCTTCGTCACCTTTCTCCGGCGAGCGTTCCC
____________________________________________________________
consensus CAGAGAAGACGAGAGAGTCAAAATCGGCTGCTTCGTCACCTTTCTCCGGCGAGCGTTCCC
. : . : . : . : . : . :
JMFF008D21+ TGGATACTCGCACTTGAACAGTGACCGATCAGGGAACGGCAACACTCCGACGGGGATCGC
JMFF006G14+ TGGATACTCGCACTTGAACAGTGACCGATCAGGGAACGGCAACACTCCGACGGGGATCGC
JMFF013K20+ TGGATACTCGCACTTGAACAGTGACCGATCAGGGAACGGCAACACTCCGACGGGGATCGC
JMSF022K16+ TGGATACTCGCACTTGAACAGTGACCGATCAGGGAACGGCAACACTCCGACGGGGATCGC
____________________________________________________________
consensus TGGATACTCGCACTTGAACAGTGACCGATCAGGGAACGGCAACACTCCGACGGGGATCGC
. : . : . : . : . : . :
JMFF008D21+ CGGCGAGGTTTCTCCCTGCTCGAAGAGGCAGACGTAGGGGTCATCTTCATCCCAAGACAG
JMFF006G14+ CGGCGAGGTTTCTCCCTGCTCGAAGAGGCAGACGTAGGGGTCATCTTCATCCCAAGACAG
JMFF013K20+ CGGCGAGGTTTCTCCCTGCTCGAAGAGGCAGACGTAGGGGTCATCTTCATCCCAAGACAG
JMSF022K16+ CGGCGAGGTTTCTCCCTGCTCGAAGAGGCAGACGTAGGGGTCATCTTCATCCCAAGACAG
____________________________________________________________
consensus CGGCGAGGTTTCTCCCTGCTCGAAGAGGCAGACGTAGGGGTCATCTTCATCCCAAGACAG
. : . : . : . : . : . :
JMFF008D21+ CGGAGAATATTCCGGCGAGGCGACCACAAATACCTCATAGTCCGGAACCGCGACGGAGAC
JMFF006G14+ CGGAGAATATTCCGGCGAGGCGACCACAAATACCTCATAGTCCGGAACCGCGACGGAGAC
JMFF013K20+ CGGAGAATATTCCGGCGAGGCGACCACAAATACCTCATAGTCCGGAACCGCGACGGAGAC
JMSF022K16+ CGGAGAATATTCCGGCGAGGCGACCACAAATACCTCATAGTCCGGAACCGCGACGGAGAC
____________________________________________________________
consensus CGGAGAATATTCCGGCGAGGCGACCACAAATACCTCATAGTCCGGAACCGCGACGGAGAC
. : . : . : . : . : . :
JMFF008D21+ CGCCGGAATCGACGGCGCGGTGGGGACCACTCGACGACCAGGGGCGGCTCCCAGTCTGAA
JMFF006G14+ CGCCGGAATCGACGGCGCGGTGGGGACCACTCGACGACCAGGGGCGGCTCCCAGTCTGAA
JMFF013K20+ CGCCGGAATCGACGGCGCGGTGGGGACCACTCGACGACCAGGGGCGGCTCCCAGTCTGAA
JMSF022K16+ CGCCGGAATCGACGGCGCGGTGGGGACCACTCGACGACCAGGGGCGGCTCCCAGTCTGAA
____________________________________________________________
consensus CGCCGGAATCGACGGCGCGGTGGGGACCACTCGACGACCAGGGGCGGCTCCCAGTCTGAA
. : . : . : . : . : . :
JMFF008D21+ ATTCTCAGTGATGAGTTTATTGGCCGTAAAGTCGGCGGCGCTTTTGGTGGTTCGGGGCTG
JMFF006G14+ ATTCTCAGTGATGAGTTTATTGGCCGTAAAGTCGGCGGCGCTTTTGGTGGTTCGGGGCTG
JMFF013K20+ ATTCTCAGTGATGAGTTTATTGGCCGTAAAGTCGGCGGCGCTTTTGGTGGTTCGGGGCTG
JMSF022K16+ ATTCTCAGTGATGAGTTTATTGGCCGTAAAGTCGGCGGCGCTTTTGGTGGTTCGGGGCTG
____________________________________________________________
consensus ATTCTCAGTGATGAGTTTATTGGCCGTAAAGTCGGCGGCGCTTTTGGTGGTTCGGGGCTG
. : . : . : . : . : . :
JMFF008D21+ AGCGACGCCGGAAAAGTGAACGGCGTAGTGAGAAACGGCGGCGTGATAGATGCAACGGTT
JMFF006G14+ AGCGACGCCGGAAAAGTGAACGGCGTAGTGAGAAACGGCGGCGTGATAGATGCAACGGTT
JMFF013K20+ AGCGACGCCGGAAAAGTGAACGGCGTAGTGAGAAACGGCGGCGTGATAGACGCAACGGTT
JMSF022K16+ AGCGACGCCGGAAAAGTGAACGGCGTAGTGAGAAACGGCGGCGTGATAGATGCAACGGTT
____________________________________________________________
consensus AGCGACGCCGGAAAAGTGAACGGCGTAGTGAGAAACGGCGGCGTGATAGATGCAACGGTT
. : . : . : . : . : . :
JMFF008D21+ GTAGAGCAAGCCGAAGAAGATGAGAAGCGAAACGACGACGTACGCGGAATTCCCACGACC
JMFF006G14+ GTAGAGCAAGCCGAAGAAGATGAGAAGCGAAACGACGACGTACGCGGAATTCCCACGACC
JMFF013K20+ GTAGAGCAAGCCGAAGAAGATGAGAAGCGAAACGACGACGTACGCGGAATTCCCACGACC
JMSF022K16+ GTAGAGCAAGCCGAAGAAGATGAGAAGCGAAACGACGACGTACGCGGAATTCCCACGACC
____________________________________________________________
consensus GTAGAGCAAGCCGAAGAAGATGAGAAGCGAAACGACGACGTACGCGGAATTCCCACGACC
. : . : . : . : . : . :
JMFF008D21+ CTTTCTGGCCATTGAGAATCCGGGAGGCGTTAAT
JMFF006G14+ CTTTCTGGCCATTGAGAATCCGGGAGGCGTTAATGGAAGAATGAAAC
JMFF013K20+ CTTTCTGGCCATTGAGAATCCGGGAGGCGTTAATGGAAGAATGAAAC
JMSF022K16+ CTTTCTGGCCATTGAGAATCCGGGAGGCGTTAATGGAAGAATGAAACAGAGATGCTGCTC
____________________________________________________________
consensus CTTTCTGGCCATTGAGAATCCGGGAGGCGTTAATGGAAGAATGAAACAGAGATGCTGCTC