Contig 002223:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS074G01Sequence609002223 (3)
JMSF022J18Sequence660002223 (3)362009947 (3)gb|KDP24475.1|1e-22hypothetical protein JCGZ_25039 [Jatropha curcas]
JMSF025B01Sequence680002223 (3)ref|NP_001233919.1|2e-104LAX1 protein [Solanum lycopersicum] ref|XP_010325706.1| PREDICTED: LAX1 protein 641009947 (3)ref|XP_011077572.1|3e-88PREDICTED: auxin transporter-like protein 2 [Sesamum indicum]

Alignment

This contig is upended


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JMSF025B01+                                                          CAACAAGCTCCAA
                      ____________________________________________________________
consensus                                                            CAACAAGCTCCAA
 
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JMSF025B01+           ATATGTATGTCCATGTCCTCTNGTCTAACCGGTCATTTATGTAGTATATGTTACTAGCAC
                      ____________________________________________________________
consensus             ATATGTATGTCCATGTCCTCTNGTCTAACCGGTCATTTATGTAGTATATGTTACTAGCAC
 
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JMSF025B01+           AAGCAATGAGTTGTATGACAGATCCAAAGAGAAGGAATGTACAGTTGAAGGCAAGGCCCA
                      ____________________________________________________________
consensus             AAGCAATGAGTTGTATGACAGATCCAAAGAGAAGGAATGTACAGTTGAAGGCAAGGCCCA
 
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JMSF025B01+           CTGCTTTCCAGTATGGACCCAACAATCCATCAAGCACTTCAAACCACTGAATAACATGGT
                      ____________________________________________________________
consensus             CTGCTTTCCAGTATGGACCCAACAATCCATCAAGCACTTCAAACCACTGAATAACATGGT
 
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JMSF025B01+           TTTTAAAGCTTACACCTTCTTTCTCTTTCCTGCTTCTGTACTCTATGTAGAGTACACTTA
                      ____________________________________________________________
consensus             TTTTAAAGCTTACACCTTCTTTCTCTTTCCTGCTTCTGTACTCTATGTAGAGTACACTTA
 
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JMSF025B01+           TGAGATAAGCTGTCCAGCTTCCCAGCAGTCCATAGAACACTTGAAGCACAATCCCTGATA
                      ____________________________________________________________
consensus             TGAGATAAGCTGTCCAGCTTCCCAGCAGTCCATAGAACACTTGAAGCACAATCCCTGATA
 
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JMSF025B01+           GCATACCAAGTTGTGAAAAGGAATATGGCAGTGTCAAGAGGACCTGTGCCACTTGGTTGG
                      ____________________________________________________________
consensus             GCATACCAAGTTGTGAAAAGGAATATGGCAGTGTCAAGAGGACCTGTGCCACTTGGTTGG
 
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JMSF025B01+           AAGCACAGCTGAACCAAGCATCCCAAGCAGAGCCGCCATGCCAGAGAAAGCTCTTCATAC
JMSF022J18+                                                                      C
                      ____________________________________________________________
consensus             AAGCACAGCTGAACCAAGCATCCCAAGCAGAGCCGCCATGCCAGAGAAAGCTCTTCATAC
 
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JMSF025B01+           TGAACAAGGACTGTTCTTCATCTTTGTTCTCAGCTTCTTCTTTGGCGCCGCCATCATGTT
JMFS074G01+                                     TTCTCAGCTTCTTCTTTGGCGCCGCCATCATGTT
JMSF022J18+           TGAACAAGGACTGTTCTTCATCTTTGTTCTCAGCTTCTTCTTNGGCGCCGCCATCATGTT
                      ____________________________________________________________
consensus             TGAACAAGGACTGTTCTTCATCTTTGTTCTCAGCTTCTTCTTTGGCGCCGCCATCATGTT
 
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JMSF025B01+           CCAAGACAATAGCTTCCTCTGCTTGCTTCTGGGGCAACATTGTTGTGTTTCGATTTTATC
JMFS074G01+           CCAAGACAATAGCTTCCTCTGCTTGCTTCTGGGGCAACATTGTTGTGTTTCGATTTTATC
JMSF022J18+           CCAAGACAATAGCTTCCTCTGCTTGCTTCTGGGGCAACATTGTTGTGTTTCGATTTTATC
                      ____________________________________________________________
consensus             CCAAGACAATAGCTTCCTCTGCTTGCTTCTGGGGCAACATTGTTGTGTTTCGATTTTATC
 
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JMSF025B01+           CCAGAAAAAGAAACCTCTTGTTCTCGAGACGTCTCTTTCTTCAACCCAGATCTCAACG-A
JMFS074G01+           CCAGAAAAAGAAACCTCTTGTTCTCGAGACGTCTCTTTCTTCAACCCAGATCTCAACGAA
JMSF022J18+           CCAGAAAAAGAAACCTCTTGTTCTCGAGACGTCTCTTTCTTCAACCTAGATCTCAACG-A
                      ____________________________________________________________
consensus             CCAGAAAAAGAAACCTCTTGTTCTCGAGACGTCTCTTTCTTCAACCCAGATCTCAACG-A
 
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JMSF025B01+           AAAAAATTCTCTCTTTCTCTCTCTTTCTGATTTGTGCTTTCTTTTGAGAACCTTTCTTCT
JMFS074G01+           AAAAAATTCTCTCTTTCTCTCTCTTTCTGATTTGTGCTTTCTTTTGAGAACCTTTCTTCT
JMSF022J18+           AAAAAATTCTCTCTTTCTCTCTCTTTCTGATTTGTGCTTTCTTTTGAGAACCTTTCTTCT
                      ____________________________________________________________
consensus             AAAAAATTCTCTCTTTCTCTCTCTTTCTGATTTGTGCTTTCTTTTGAGAACCTTTCTTCT
 
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JMSF025B01+           TGTTTGC                                                     
JMFS074G01+           TGTTTGCAGCGAAAACAGTGAAAGCACGGATATAAAAAAAGGCTCAAAGGTTCTTTAATT
JMSF022J18+           TGTTTGCAGCGAAAACAGTGAAAGCACGGATATAAAAAAAGGCTCAAAGGTTCTTTAATT
                      ____________________________________________________________
consensus             TGTTTGCAGCGAAAACAGTGAAAGCACGGATATAAAAAAAGGCTCAAAGGTTCTTTAATT
 
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JMFS074G01+           TTCGCCAGGAATTCAAACACCCACCATAGAGCTAAAGCAGACAGAAATAAATGCAGCCCA
JMSF022J18+           TTCGCCAGGAATTCAAACACCCACCATAGAGCTAAAGCAGACAGAAATAAATGCAGCCCA
                      ____________________________________________________________
consensus             TTCGCCAGGAATTCAAACACCCACCATAGAGCTAAAGCAGACAGAAATAAATGCAGCCCA
 
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JMFS074G01+           GAAATTATGGAAAAAGACGGATCACCACCCCCCAGCAACAAAATCTCTGTAATCACACCT
JMSF022J18+           GAAATTATGGACAAAGACGGATCACCACCCCCCAGCAACAAAATCTCTGTAATCACACCT
                      ____________________________________________________________
consensus             GAAATTATGGACAAAGACGGATCACCACCCCCCAGCAACAAAATCTCTGTAATCACACCT
 
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JMFS074G01+           CCACTTAAATACTGTGATTCGATATAGATAAATATATATATTTATAGGTGCAGAGCGGCC
JMSF022J18+           CCACTTAAATACTGTGATTCGATATAGATAAATATATATATTTATAGGTGCAGAGCGGCC
                      ____________________________________________________________
consensus             CCACTTAAATACTGTGATTCGATATAGATAAATATATATATTTATAGGTGCAGAGCGGCC
 
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JMFS074G01+           GAGACGGCGAAAGATGTGTGAAAAGCAACAAAGGGTACAGAGATGACAGTGTTTTTGTAC
JMSF022J18+           GAGACGGCGAAAGATGTGTGAAAAGCAACAAAGGGTACAGAGATGACAGTGTTTTTGTAC
                      ____________________________________________________________
consensus             GAGACGGCGAAAGATGTGTGAAAAGCAACAAAGGGTACAGAGATGACAGTGTTTTTGTAC
 
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JMFS074G01+           ATACAGTACAGAGAGATTGATGAGAAAGAACAAAACAGACTCTTCTCTTATACTACTGTG
JMSF022J18+           ATACAGTACAGAGAGATTGATGAGAAAGAACAAAACAGACTCTTCTCTTATACTACTGTG
                      ____________________________________________________________
consensus             ATACAGTACAGAGAGATTGATGAGAAAGAACAAAACAGACTCTTCTCTTATACTACTGTG
 
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JMFS074G01+           TTATTATTAACTATTGTGAAAAGAAATTGCCTTTT                         
JMSF022J18+           TTATTATTAACTATTGTGAAAAGAAATTGCCTTTTTTGATATAGTATGTGAAAGTGTATC
                      ____________________________________________________________
consensus             TTATTATTAACTATTGTGAAAAGAAATTGCCTTTTTTGATATAGTATGTGAAAGTGTATC