| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF040D12 | Sequence | 528 | 002215 (10) | ref|XP_002279933.1| | 1e-07 | PREDICTED: DNA-binding protein S1FA [Vitis vinifera] emb|CBI32704.3| unnamed pro | 505 | 002215 (10) | ref|XP_002279933.1| | 5e-07 | PREDICTED: DNA-binding protein S1FA [Vitis vinifera] emb|CBI32704.3| unnamed pro |
| JMFS162B09 | Sequence | 499 | 002215 (10) | ref|XP_002279933.1| | 1e-07 | PREDICTED: DNA-binding protein S1FA [Vitis vinifera] emb|CBI32704.3| unnamed pro | |||||
| JMSF021L18 | Sequence | 500 | 002215 (10) | emb|CDP06720.1| | 6e-10 | unnamed protein product [Coffea canephora] | 442 | 002215 (10) | emb|CDP06720.1| | 5e-10 | unnamed protein product [Coffea canephora] |
| JMSF037L18 | Sequence | 534 | 002215 (10) | ref|XP_002279933.1| | 1e-07 | PREDICTED: DNA-binding protein S1FA [Vitis vinifera] emb|CBI32704.3| unnamed pro | 476 | 002215 (10) | ref|XP_002279933.1| | 1e-07 | PREDICTED: DNA-binding protein S1FA [Vitis vinifera] emb|CBI32704.3| unnamed pro |
| JMSF039L18 | Sequence | 485 | 002215 (10) | ref|XP_002279933.1| | 1e-07 | PREDICTED: DNA-binding protein S1FA [Vitis vinifera] emb|CBI32704.3| unnamed pro | |||||
| JMSF046G16 | Sequence | 500 | 002215 (10) | ref|XP_002279933.1| | 1e-07 | PREDICTED: DNA-binding protein S1FA [Vitis vinifera] emb|CBI32704.3| unnamed pro | 450 | 002215 (10) | ref|XP_002279933.1| | 9e-08 | PREDICTED: DNA-binding protein S1FA [Vitis vinifera] emb|CBI32704.3| unnamed pro |
This contig is upended
. : . : . : . : . : . :
rJMFF040D12+ GAGTTTTAAGTGCCATAAACGCCGCCGCGGTTTCTAGTTTTCCGCGTGTTGAGGT
JMFS162B09- CGCGGTTTCTAGTTTTCCGCGTGTTGAGGT
rJMSF037L18+ GAGTTTTAAGTGCCATAAACGCCGCCGCGGTTTCTAGTTTTCCGCGTGTTGAGGT
rJMSF039L18+ GAGTTTTAAGTGCCATAAACGCCGCCGCGGTTTCTAGTTTTCCGCGTGTTGAGGT
rJMSF046G16+ AGTTTTCCGCGTGTTGAGGT
JMFF040D12- GAGTTTTAAGTGCCATAAACGCCGCCGCGGTTTCTAGTTTTCCGCGTGTTGAGGT
JMSF037L18- GAGTTTTAAGTGCCATAAACGCCGCCGCGGTTTCTAGTTTTCCGCGTGTTGAGGT
JMSF046G16- AGTTTTCCGCGTGTTGAGGT
rJMSF021L18+ AGTTTTCCGCGTGTTGAGGT
JMSF021L18- AGTTTTCCGCGTGTTGAGGT
____________________________________________________________
consensus GAGTTTTAAGTGCCATAAACGCCGCCGCGGTTTCTAGTTTTCCGCGTGTTGAGGT
. : . : . : . : . : . :
rJMFF040D12+ CGTCGAAATCGCCGGCCTTTCCATTAGCGACGGCGAGACTGTGCGCGGAGATCAGGTCAG
JMFS162B09- CGTCGAAATCGCCGGCCTTTCCATTAGCGACGGCGAGACTGTGCGCGGAGATCAGGTCAG
rJMSF037L18+ CGTCGAAATCGCCGGCCTTTCCATTAGCGACGGCGAGACTGTGCGCGGAGATCAGGTCAG
rJMSF039L18+ CGTCGAAATCGCCGGCCTTTCCATTAGCGACGGCGAGACTGTGCGCGGAGATCAGGTCAG
rJMSF046G16+ CGTCGAAATCGCCGGCCTTTCCATTAGCGACGGCGAGACTGTGCGCGGAGATCAGGTCAG
JMFF040D12- CGTCGAAATCGCCGGCCTTTCCATTAGCGACGGCGAGACTGTGCGCGGAGATCAGGTCAG
JMSF037L18- CGTCGAAATCGCCGGCCTTTCCATTAGCGACGGCGAGACTGTGCGCGGAGATCAGGTCAG
JMSF046G16- CGTCGAAATCGCCGGCCTTTCCATTAGCGACGGCGAGACTGTGCGCGGAGATCAGGTCAG
rJMSF021L18+ CGTCGAAATCGCCGGCCTTTCCATTAGCGACGGCGAGACTGTGCGCGGAGATCAGGTCAG
JMSF021L18- CGTCGAAATCGCCGGCCTTTCCATTAGCGACGGCGAGACTGTGCGCGGAGATCAGGTCAG
____________________________________________________________
consensus CGTCGAAATCGCCGGCCTTTCCATTAGCGACGGCGAGACTGTGCGCGGAGATCAGGTCAG
. : . : . : . : . : . :
rJMFF040D12+ CTCGGTTTCCTCTCAGCCATGGATCACGAAGGCGATTTNGGAGATGACAGAATGGGAAAT
JMFS162B09- CTCGGTTTCCTCTCAGCCATGGATCACGAAGGCGATTTCGGAGATGACAGAATGGGAAAT
rJMSF037L18+ CTCGGTTTCCTCTCAGCCATGGATCACGAAGGCGATTTCGGAGATGACAGAATGGGAAAT
rJMSF039L18+ CTCGGTTTCCTCTCAGCCATGGATCACGAAGGCGATTTCGGAGATGACAGAATGGGAAAT
rJMSF046G16+ CTCGGTTTCCTCTCAGCCATGGATCACGAAGGCGATTTCGGAGATGACAGAATGGGAAAT
JMFF040D12- CTCGGTTTCCTCTCAGCCATGGATCACGAAGGCGATTTCGGAGATGACAGAATGGGAAAT
JMSF037L18- CTCGGTTTCCTCTCAGCCATGGATCACGAAGGCGATTTCGGAGATGACAGAATGGGAAAT
JMSF046G16- CTCGGTTTCCTCTCAGCCATGGATCACGAAGGCGATTTCGGAGATGACAGAATGGGAAAT
rJMSF021L18+ CTCGGTTTCCTCTCAGCCATGGATCACGAAGGCGATTTCGGAGATGACAGAATGGGAAAT
JMSF021L18- CTCGGTTTCCTCTCAGCCATGGATCACGAAGGCGATTTCGGAGATGACAGAATGGGAAAT
____________________________________________________________
consensus CTCGGTTTCCTCTCAGCCATGGATCACGAAGGCGATTTCGGAGATGACAGAATGGGAAAT
. : . : . : . : . : . :
rJMFF040D12+ GTGCCCCAGGACGTTAAAGGATTCAACCCAGGACTGATTGTCTTACTTGTTGTTGGTGGG
JMFS162B09- GTGCCCCAGGACGTTAAAGGATTCAACCCAGGACTGATTGTCTTACTTGTTGTTGGTGGG
rJMSF037L18+ GTGCCCCAGGACGTTAAAGGATTCAACCCAGGACTGATTGTCTTACTTGTTGTTGGTGGG
rJMSF039L18+ GTGCCCCAGGACGTTAAAGGATTCAACCCAGGACTGATTGTCTTACTTGTTGTTGGTGGG
rJMSF046G16+ GTGCCCCAGGACGTTAAAGGATTCAACCCAGGACTGATTGTCTTACTTGTTGTTGGTGGG
JMFF040D12- GTGCCCCAGGACGTTAAAGGATTCAACCCAGGACTGATTGTCTTACTTGTTGTTGGTGGG
JMSF037L18- GTGCCCCAGGACGTTAAAGGATTCAACCCAGGACTGATTGTCTTACTTGTTGTTGGTGGG
JMSF046G16- GTGCCCCAGGACGTTAAAGGATTCAACCCAGGACTGATTGTCTTACTTGTTGTTGGTGGG
rJMSF021L18+ GTGCCCCAGGACGTTAAAGGATTCAACCCAGGACTGATTGTCTTACTTGTTCTTGGTGGG
JMSF021L18- GTGCCCCAGGACGTTAAAGGATTCAACCCAGGACTGATTGTCTTACTTGTTCTTGGTGGG
____________________________________________________________
consensus GTGCCCCAGGACGTTAAAGGATTCAACCCAGGACTGATTGTCTTACTTGTTGTTGGTGGG
. : . : . : . : . : . :
rJMFF040D12+ CTAGTTTTGGCATTCCTCATTGGAAATTACTTCCTCTACATGTATGCACAGAAAACCCTC
JMFS162B09- CTAGTTTTGGCATTCCTCATTGGAAATTACTTCCTCTACATGTATGCACAGAAAACCCTC
rJMSF037L18+ CTAGTTTTGGCATTCCTCATTGGAAATTACTTCCTCTACATGTATGCACAGAAAACCCTC
rJMSF039L18+ CTAGTTTTGGCATTCCTCATTGGAAATTACTTCCTCTACATGTATGCACAGAAAACCCTC
rJMSF046G16+ CTAGTTTTGGCATTCCTCATTGGAAATTACTTCCTCTACATGTATGCACAGAAAACCCTC
JMFF040D12- CTAGTTTTGGCATTCCTCATTGGAAATTACTTCCTCTACATGTATGCACAGAAAACCCTC
JMSF037L18- CTAGTTTTGGCATTCCTCATTGGAAATTACTTCCTCTACATGTATGCACAGAAAACCCTC
JMSF046G16- CTAGTTTTGGCATTCCTCATTGGAAATTACTTCCTCTACATGTATGCACAGAAAACCCTC
rJMSF021L18+ CTAGTTTTGGCATTCCTCATTGGAAATTACTTCCTCTACATGTATGCACAGAAAACCCTC
JMSF021L18- CTAGTTTTGGCATTCCTCATTGGAAATTACTTCCTCTACATGTATGCACAGAAAACCCTC
____________________________________________________________
consensus CTAGTTTTGGCATTCCTCATTGGAAATTACTTCCTCTACATGTATGCACAGAAAACCCTC
. : . : . : . : . : . :
rJMFF040D12+ CCTGCAAAGAAAAAGAAGCCAGTCTCCAAGAAGAAGATGAAGAAAGAAAGACTGAAACAA
JMFS162B09- CCTGCAAAGAAAAAGAAGCCAGTCTCCAAGAAGAAGATGAAGAAAGAAAGACTGAAACAA
rJMSF037L18+ CCTGCAAAGAAAAAGAAGCCAGTCTCCAAGAAGAAGATGAAGAAAGAAAGACTGAAACAA
rJMSF039L18+ CCTGCAAAGAAAAAGAAGCCAGTCTCCAAGAAGAAGATGAAGAAAGAAAGACTGAAACAA
rJMSF046G16+ CCTGCAAAGAAAAAGAAGCCAGTCTCCAAGAAGAAGATGAAGAAAGAAAGACTGAAACAA
JMFF040D12- CCTGCAAAGAAAAAGAAGCCAGTCTCCAAGAAGAAGATGAAGAAAGAAAGACTGAAACAA
JMSF037L18- CCTGCAAAGAAAAAGAAGCCAGTCTCCAAGAAGAAGATGAAGAAAGAAAGACTGAAACAA
JMSF046G16- CCTGCAAAGAAAAAGAAGCCAGTCTCCAAGAAGAAGATGAAGAAAGAAAGACTGAAACAA
rJMSF021L18+ CCTGCAAAGAAAAAGAAGCCAGTCTCCAAGAAGAAGATGAAGAAAGAAAGACTGAAACAA
JMSF021L18- CCTGCAAAGAAAAAGAAGCCAGTCTCCAAGAAGAAGATGAAGAAAGAAAGACTGAAACAA
____________________________________________________________
consensus CCTGCAAAGAAAAAGAAGCCAGTCTCCAAGAAGAAGATGAAGAAAGAAAGACTGAAACAA
. : . : . : . : . : . :
rJMFF040D12+ GGTGTTTCAGCACCCGGGGAATAGATATGCAACAGAAGCCCA-GGAGTATTCCATTTTGG
JMFS162B09- GGTGTTTCAGCACCCGGGGAATAGATATGCAACAGAAGCCCA-GGAGTATTCCATTTTGG
rJMSF037L18+ GGTGTTTCAGCACCCGGGGAATAGATATGCAACAGAAGCCCA-GGAGTATTCCATTTTGG
rJMSF039L18+ GGTGTTTCAGCACCCGGGGAATAGATATGCAACAGAAGCCCACGGAGTATTCCATTTTGG
rJMSF046G16+ GGTGTTTCAGCACCCGGGGAATAGATATGCAACAGAAGCCCA-GGAGTATTCCATTTTGG
JMFF040D12- GGTGTTTCAGCACCCGGGGAATAGATATGCAACAGAAGCCCA-GGAGTATTCCATTTTGG
JMSF037L18- GGTGTTTCAGCACCCGGGGAATAGATATGCAACAGAAGCCCA-GGAGTATTCCATTTTGG
JMSF046G16- GGTGTTTCAGCACCCGGGGAATAGATATGCAACAGAAGCCCA-GGAGTATTCCATTTTGG
rJMSF021L18+ GGTGTTTCAGCACCCGGGGAATAGATATGCAACAGAAGCCCA-GGAGTATTCCATTTTGG
JMSF021L18- GGTGTTTCAGCACCCGGGGAATAGATATGCAACAGAAGCCCA-GGAGTATTCCATTTTGG
____________________________________________________________
consensus GGTGTTTCAGCACCCGGGGAATAGATATGCAACAGAAGCCCA-GGAGTATTCCATTTTGG
. : . : . : . : . : . :
rJMFF040D12+ TGTTTAGTGGCTGTGTGAATCTCTGTTAAAACTTATTTTTCCCTTTCTTGATGAACAAAT
JMFS162B09- TGTTTAGTGGCTGTGTGAATCTCTGTTAAAACTTATTTTTCCCTTTCTTGATGAACAAAT
rJMSF037L18+ TGTTTAGTGGCTGTGTGAATCTCTGTTAAAACTTATTTTTCCCTTTCTTGATGAACAAAT
rJMSF039L18+ TGTTTAGTGGCTGTGTGAATCTCTGTTAAAACTTATTTTTCCCTTTCTTGATGAACAAAT
rJMSF046G16+ TGTTTAGTGGCTGTGTGAATCTCTGTTAAAACTTATTTTTCCCTTTCTTGATGAACAAAT
JMFF040D12- TGTTTAGTGGCTGTGTGAATCTCTGTTAAAACTTATTTTTCCCTTTCTTGATGAACAAAT
JMSF037L18- TGTTTAGTGGCTGTGTGAATCTCTGTTAAAACTTATTTTTCCCTTTCTTGATGAACAAAT
JMSF046G16- TGTTTAGTGGCTGTGTGAATCTCTGTTAAAACTTATTTTTCCCTTTCTTGATGAACAAAT
rJMSF021L18+ TGTTTAGTGGCTGTGTGAATCTCTGTTAAAACTTATTTTTCCCTTTCTTGATGAACAAAT
JMSF021L18- TGTTTAGTGGCTGTGTGAATCTCTGTTAAAACTTATTTTTCCCTTTCTTGATGAACAAAT
____________________________________________________________
consensus TGTTTAGTGGCTGTGTGAATCTCTGTTAAAACTTATTTTTCCCTTTCTTGATGAACAAAT
. : . : . : . : . : . :
rJMFF040D12+ ATTGTGCCTTTTACTTATCACCTTAGACAGA
JMFS162B09- ATTGTGCCTTTTACTTATCACCTTAGACAGAACTTGGCTTGAGTTGGAGC
rJMSF037L18+ AT
rJMSF039L18+ ATTGTGCCTT
rJMSF046G16+ ATTGTGCCTT
JMFF040D12- ATTGTGCCTTTTACTTATCACCTTAGACAGAACTTGGCTTGAGTTGGAGCAAAA
JMSF037L18- ATTGTGCCTTTTACTTATCACCTTAGACAGAACTTGGCTTGAGTTGGAGCAAAA
JMSF046G16- ATTGTGCCTTTTACTTATCACCTTAGACAGAACTTGGCTTGAGTTGGAGCAAAA
rJMSF021L18+ AT
JMSF021L18- ATTGTGCCTTTTACTTATCACCTTAGACAGAACTTGGCTTGAGTTGGAGCAAAAAAAAAA
____________________________________________________________
consensus ATTGTGCCTTTTACTTATCACCTTAGACAGAACTTGGCTTGAGTTGGAGCAAAAAAAAAA