| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF015O24 | Sequence | 660 | 002214 (4) | ref|XP_009630311.1| | 3e-39 | PREDICTED: protein HGV2 [Nicotiana tomentosiformis] | 786 | 005388 (4) | ref|XP_010646387.1| | 2e-51 | PREDICTED: protein HGV2 isoform X1 [Vitis vinifera] |
| JMFF017A04 | Sequence | 551 | 002214 (4) | ref|XP_009630311.1| | 3e-39 | PREDICTED: protein HGV2 [Nicotiana tomentosiformis] | 754 | 005388 (4) | ref|XP_010646388.1| | 5e-41 | PREDICTED: protein HGV2 isoform X2 [Vitis vinifera] |
| JMSF003H18 | Sequence | 444 | 002214 (4) | ref|XP_009630311.1| | 6e-27 | PREDICTED: protein HGV2 [Nicotiana tomentosiformis] | 755 | 005388 (4) | ref|XP_010646387.1| | 3e-45 | PREDICTED: protein HGV2 isoform X1 [Vitis vinifera] |
| JMSF021L07 | Sequence | 636 | 002214 (4) | ref|XP_009630311.1| | 2e-29 | PREDICTED: protein HGV2 [Nicotiana tomentosiformis] | 782 | 005388 (4) | ref|XP_010646388.1| | 9e-55 | PREDICTED: protein HGV2 isoform X2 [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
JMFF015O24+ CCA
____________________________________________________________
consensus CCA
. : . : . : . : . : . :
JMFF015O24+ AGATCAGACTCGATCTTCTTTTGCATTATCATCATCTTCTTCTTCATCTTCATTTTCATC
JMSF021L07+ CATTATCATCATCTTCTTCTTCATCTTCATTTTCATC
____________________________________________________________
consensus AGATCAGACTCGATCTTCTTTTGCATTATCATCATCTTCTTCTTCATCTTCATTTTCATC
. : . : . : . : . : . :
JMFF015O24+ ATCATCCTCTTCTTCTTTTCCATTTTGTATTGATGTTCCACCTTGTTCAGTGGGATTTGC
JMFF017A04+ TCAGTGGGATTTGC
JMSF021L07+ ATCATCCTCTTCTTCTTTTCCATTTTGTATTGATGTTCCACCTTGTTCAGTGGGATTTGC
____________________________________________________________
consensus ATCATCCTCTTCTTCTTTTCCATTTTGTATTGATGTTCCACCTTGTTCAGTGGGATTTGC
. : . : . : . : . : . :
JMFF015O24+ AACAGAGGATTCAGCACTTATGCCACTCTTAGCAGGTTCATCTTTACAGGAATTTTGTTG
JMFF017A04+ AACAGAGGATTCAGCACTTATGCCACTCTTAGCAGGTTCATCTTTACAGGAATTTTGTTG
JMSF021L07+ AACAGAGGATTCAGCACTTATGCCACTCTTAGCAGGTTCATCTTTACAGGAATTTTGTTG
____________________________________________________________
consensus AACAGAGGATTCAGCACTTATGCCACTCTTAGCAGGTTCATCTTTACAGGAATTTTGTTG
. : . : . : . : . : . :
JMFF015O24+ AGATTCCTCCTCCTTTCTAGGCACAGAACCCAATGGATCAGCTTCCTCTTGAGCTTTGTA
JMFF017A04+ AGATTCCTCCTCCTTTCTAGGCACAGAACCCAATGGATCAGCTTCCTCTTGAGCTTTGTA
JMSF003H18+ GGATCAGCTTCNTCTTGAGCTTTGTA
JMSF021L07+ AGATTCCTCCTCCTTTCTAGGCACAGAACCCAATGGATCAGCTTCCTCTTGAGCTTTGTA
____________________________________________________________
consensus AGATTCCTCCTCCTTTCTAGGCACAGAACCCAATGGATCAGCTTCCTCTTGAGCTTTGTA
. : . : . : . : . : . :
JMFF015O24+ CAACAATGCACATCCAAATTTATAGTATGCTTGCACACATTCAGGAGAAAGCTCCCCGTG
JMFF017A04+ CAACAATGCACATCCAAATTTATAGTATGCTTGCACACATTCAGGAGAAAGCTCCCCGTG
JMSF003H18+ CAACAATGCACATCCAAATTTATAGTATGCTTGCACACATTCAGGAGAAAGCTCCCCGTG
JMSF021L07+ CAACAATGCACATCCAAATTTATAGTATGCTTGCACACATTCAGGAGAAAGCTCCCCGTG
____________________________________________________________
consensus CAACAATGCACATCCAAATTTATAGTATGCTTGCACACATTCAGGAGAAAGCTCCCCGTG
. : . : . : . : . : . :
JMFF015O24+ ATTCATAGCCCTGATTTCCAGCGCACGGCTATAGCATTCAGTGGCTTCAGTATAATCTTT
JMFF017A04+ ATTCATAGCCCTGATTTCCAGCGCACGGCTATAGCATTCAGTGGCTTCAGTATAATCTTT
JMSF003H18+ ATTCATAGCCCTGATTTCCAGCGCACGGCTATAGCATTCAGTGGCTTCAGTATAATCTTT
JMSF021L07+ ATTCATAGCCCTGATTTCCAGCGCACGGCTATAGCATTCAGTGGCTTCAGTATAATC-TT
____________________________________________________________
consensus ATTCATAGCCCTGATTTCCAGCGCACGGCTATAGCATTCAGTGGCTTCAGTATAATCTTT
. : . : . : . : . : . :
JMFF015O24+ GTCTTTAGAAGCCTTGTCCCCTTGTTTCGTCAGCAAATCCGCGTGCTCCAGAGATCCAAC
JMFF017A04+ GTCTTTAGAAGCCTTGTCCCCTTGTTTCGTCAGCAAATCCGCGTGCTCCAGAGATCCAAC
JMSF003H18+ GTCTTTAGAAGCCTTGTCCCCTTGTTTCGTCAGCAAATCCGCGTGCTCCAGAGATCCAAC
JMSF021L07+ GTCTTTAGAAGCCTTGTCCCCTTGTTTCGTCAGCAAATCCGCGTGCTCCAGAGATCCAAC
____________________________________________________________
consensus GTCTTTAGAAGCCTTGTCCCCTTGTTTCGTCAGCAAATCCGCGTGCTCCAGAGATCCAAC
. : . : . : . : . : . :
JMFF015O24+ AGAGGGCTCCGACGAGTGCTCACCATTTCCGTTGTTCTCAGAGTCGGAGCGCCCGAGCGT
JMFF017A04+ AGAGGGCTCCGACGAGTGCTCACCATTTCCGTTGTTCTCAGAGTCGGAGCGCCCGAGCGT
JMSF003H18+ AGAGGGCTCCGACGAGTGCTCACCATTTCCGTTGTTCTCAGAGTCGGAGCGCCCGAGCGT
JMSF021L07+ AGAGGGCTCCGACGAGTGCTCACCATTTCCGTTGTTCTCAGAGTCGGAGCGCCCGAGCGT
____________________________________________________________
consensus AGAGGGCTCCGACGAGTGCTCACCATTTCCGTTGTTCTCAGAGTCGGAGCGCCCGAGCGT
. : . : . : . : . : . :
JMFF015O24+ TATAACGCCCGCGTCCATGGAGTCCGGAATCCTTTCCGGCGAGGAGCCTTTGCCTTCTGA
JMFF017A04+ TATAACGCCCGCGTCCATGGAGTCCGGAATCCTTTCCGGCGAGGAGCCTTTGCCTTCTGA
JMSF003H18+ TATAACGCCCGCGTCCATGGAGTCCGGAATCCTTTCCGGCGAGGAGCCTTTGCCTTCTGA
JMSF021L07+ TATAACGCCCGCGTCCATGGAGTCCGGAATCCTTTCCGGCGAGGAGCCTTTGCCTTCTGA
____________________________________________________________
consensus TATAACGCCCGCGTCCATGGAGTCCGGAATCCTTTCCGGCGAGGAGCCTTTGCCTTCTGA
. : . : . : . : . : . :
JMFF015O24+ ATTCACAACCTCGTCCGCCATTGACGAGAGACGACAGCGAAAACCTAGCAGACAGAAACC
JMFF017A04+ ATTCACAACCTCGTCCGCCATTGACGAGAGACGACAGCGAAAACCTAGCAGACAGAAACC
JMSF003H18+ ATTCACAACCTCGTCCGCCATTGACGAGAGACGACAGCGAAAACCTAGCAGACAGAAACC
JMSF021L07+ ATTCACAACCTCGTCCGCCATTGACGAGAGACGACAGCGAAAACCTAGCAGACAGAAACC
____________________________________________________________
consensus ATTCACAACCTCGTCCGCCATTGACGAGAGACGACAGCGAAAACCTAGCAGACAGAAACC
. : . : . : . : . : . :
JMFF015O24+ CTACACTTCCCTCCCCTTTTTCAAAACGAAAACCCCTCAGGCGCAAAAAAATGAAG
JMFF017A04+ CTACACTTCCCTCCCCTTTTTCAAAACGAAAACCCCTCAGGCGCAAAAAAATGAAG
JMSF003H18+ CTACACTTCCCTCCCCTTTTTCAAAACGAAAACCCCTCAGGCGCAAAAAAATGAAG
JMSF021L07+ CTACACTTCCCTCCCCTTTTTCAAAACGAAAACCCCTCAGGCGCAAAAAAATGAAGGCCC
____________________________________________________________
consensus CTACACTTCCCTCCCCTTTTTCAAAACGAAAACCCCTCAGGCGCAAAAAAATGAAGGCCC