Contig 002208:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021A15Sequence683002208 (3)emb|CDP12182.1|3e-100unnamed protein product [Coffea canephora]788001819 (5)ref|XP_009590113.1|1e-103PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Nic
JMSF022A15Sequence641002208 (3)emb|CDP12182.1|3e-90unnamed protein product [Coffea canephora]384001819 (5)emb|CDP12182.1|3e-62unnamed protein product [Coffea canephora]
JMSF035O13Sequence631002208 (3)emb|CDP12182.1|7e-87unnamed protein product [Coffea canephora]752001819 (5)ref|XP_009590113.1|3e-93PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Nic

Alignment

This contig is upended


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JMSF021A15+                                                TTGGTAATCGCATAAGGAATGAA
                      ____________________________________________________________
consensus                                                  TTGGTAATCGCATAAGGAATGAA
 
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JMSF022A15+                              TATCCTTTTTGAACTAGGGCCTCAACCGCATTGCTGATGGC
JMSF035O13+                                        GAACTAGGGCNTCAACCGCATTGCTGATGGC
JMSF021A15+           AAAAGGGCTTATTTTCTTGTATCCTTTTTGAACTAGGGCNTCAACCGCATTGCTGATGGC
                      ____________________________________________________________
consensus             AAAAGGGCTTATTTTCTTGTATCCTTTTTGAACTAGGGCCTCAACCGCATTGCTGATGGC
 
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JMSF022A15+           TGTCATTCCTCCCAATCCTGATCCAATCAAAACGCCAATCTTGGATTTGTCCATAGTATC
JMSF035O13+           TGTCATTCCTCCCAATCCTGATCCAATCAAAACGCCAATCTTGGATTTGTCCATAGTATC
JMSF021A15+           TGTCATTCCTCCCAATCCTGATCCAATCAAAACGCCAATCTTGGATTTGTCCATAGTATC
                      ____________________________________________________________
consensus             TGTCATTCCTCCCAATCCTGATCCAATCAAAACGCCAATCTTGGATTTGTCCATAGTATC
 
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JMSF022A15+           AAGAACTTGCTGGGTGAGATTTGCATCATTAAGGGCCCTCTTCCCAGCAACCAAAGAGTA
JMSF035O13+           AAGAACTTGCTGGGTGAGATTTGCATCATTAAGGGCCCTCTTCCCAGCAACCAAAGAGTA
JMSF021A15+           AAGAACTTGCTGGGTGAGATTTGCATCATTAAGGGCCCTCTTCCCAGCAACCAAAGAGTA
                      ____________________________________________________________
consensus             AAGAACTTGCTGGGTGAGATTTGCATCATTAAGGGCCCTCTTCCCAGCAACCAAAGAGTA
 
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JMSF022A15+           TCTCCAGCAGTCATCCAGACGGCGATCATTCTTTCCATCTACGTAACCCTGAGTGGAGAA
JMSF035O13+           TCTCCAGCAGTCATCCAGACGGCGATCATTCTTTCCATCTACGTAACCCTGAGTGGAGAA
JMSF021A15+           TCTCCAGCAGTCATCCAGACGGCGATCATTCTTTCCATCTACGTAACCCTGAGTGGAGAA
                      ____________________________________________________________
consensus             TCTCCAGCAGTCATCCAGACGGCGATCATTCTTTCCATCTACGTAACCCTGAGTGGAGAA
 
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JMSF022A15+           GTCTCGTATCTGTCCCCCGAACCGAACTGAGTAACTTGAAACATCAAATCTGTCTATTAA
JMSF035O13+           GTCTCGTATCTGTCCCCCGAACCGAACTGAGTAACTTGAAACATCAAATCTGTCTATTAA
JMSF021A15+           GTCTCGTATCTGTCCCCCGAACCGAACTGAGTAACTTGAAACATCAAATCTGTCTATTAA
                      ____________________________________________________________
consensus             GTCTCGTATCTGTCCCCCGAACCGAACTGAGTAACTTGAAACATCAAATCTGTCTATTAA
 
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JMSF022A15+           ACTGATCCCACTCTGTCCCTCAAGAAGACAGTCATAGAATTTATGAATGTCACTGCCAAA
JMSF035O13+           ACTGATCCCACTCTGTCCCTCAAGAAGACAGTCATAGAATTTATGAATGTCACTGCCAAA
JMSF021A15+           ACTGATCCCACTCTGTCCCTCAAGAAGACAGTCATAGAATTTATGAATGTCACTGCCAAA
                      ____________________________________________________________
consensus             ACTGATCCCACTCTGTCCCTCAAGAAGACAGTCATAGAATTTATGAATGTCACTGCCAAA
 
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JMSF022A15+           CACAGAAGCAAGGCCCATTCCAGTTATGACAATCCTTTTCTTGGGGTCTGTTTCTCGCTT
JMSF035O13+           CACAGAAGCAAGGCCCATTCCAGTTATGACAATCCTTTTCTTGGGGTCTGTTTCTCGCTT
JMSF021A15+           CACAGAAGCAAGGCCCATTCCAGTTATGACAATCCTTTTCTTGGGGTCTGTTTCTCGCTT
                      ____________________________________________________________
consensus             CACAGAAGCAAGGCCCATTCCAGTTATGACAATCCTTTTCTTGGGGTCTGTTTCTCGCTT
 
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JMSF022A15+           GGGAGCCGAAACATTTGGAGATGCCATGGCCCTGATTCTCCTGCATCTTGGAGCTTTTGC
JMSF035O13+           GGGAGCCGAAACATTTGGAGATGCCATGGCCCTGATTCTCCTGCATCTTGGAGCTTTTGC
JMSF021A15+           GGGAGCCGAAACATTTGGAGATGCCATGGCCCTGATTCTCCTGCATCTTGGAGCTTTTGC
                      ____________________________________________________________
consensus             GGGAGCCGAAACATTTGGAGATGCCATGGCCCTGATTCTCCTGCATCTTGGAGCTTTTGC
 
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JMSF022A15+           CTTAGAGGCTGCTGAACCCAATCTCAATTGGGTGGTTTGAAGCCCATTGTATTGGCAAAT
JMSF035O13+           CTTAGAGGCTGCTGAACCCAATCTCAATTGGGTGGTTTGAAGCCCATTGTATTGGCAAAT
JMSF021A15+           CTTAGAGGCTGCTGAACCCAATCTCAATTGGGTGGTTTGAAGCCCATTGTATTGGCAAAT
                      ____________________________________________________________
consensus             CTTAGAGGCTGCTGAACCCAATCTCAATTGGGTGGTTTGAAGCCCATTGTATTGGCAAAT
 
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JMSF022A15+           AGAAACTCCATTTCTTGATGAATCTTTATTCTTGAAAGCCAAACCAGAAGAACATGTATT
JMSF035O13+           AGAAACTCCATTTCTTGATGAATCTTTATTCTTGAAAGCCAAACCAGAAGAACATGTATT
JMSF021A15+           AGAAACTCCATTTCTTGATGAATCTTTATTCTTGAAAGCCAAACCAGAAGAACATGTATT
                      ____________________________________________________________
consensus             AGAAACTCCATTTCTTGATGAATCTTTATTCTTGAAAGCCAAACCAGAAGAACATGTATT
 
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JMSF022A15+           GCCAAGGCTAGCCATCTATCTCTCTTTACTGTTTGTGAAAATTTTGGGTAGACCACCCTC
JMSF035O13+           GCCAAGGCTAGCCATCTATCTCTCTTTACTGTTTGTGAAAATTTTGGGTAGACCACCCTC
JMSF021A15+           GCCAAGGCTAGCCATCTATCTCTCTTTACTGTTTGTGAAAATTTTGGGTAGACCACCCTC
                      ____________________________________________________________
consensus             GCCAAGGCTAGCCATCTATCTCTCTTTACTGTTTGTGAAAATTTTGGGTAGACCACCCTC