Contig 002203:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013O16Sequence324002203 (3)ref|XP_009802882.1|6e-12PREDICTED: probable protein phosphatase 2C 4 [Nicotiana sylvestris]726002550 (3)ref|XP_006350766.1|4e-143PREDICTED: probable protein phosphatase 2C 4-like [Solanum tuberosum]
JMFF014D05Sequence496002203 (3)ref|XP_009802882.1|4e-53PREDICTED: probable protein phosphatase 2C 4 [Nicotiana sylvestris]783002550 (3)ref|XP_006350766.1|2e-155PREDICTED: probable protein phosphatase 2C 4-like [Solanum tuberosum]
JMSF020H13Sequence664002203 (3)ref|XP_009802882.1|4e-61PREDICTED: probable protein phosphatase 2C 4 [Nicotiana sylvestris]135002550 (3)ref|XP_009625005.1|4e-19PREDICTED: probable protein phosphatase 2C 4 [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF020H13+                                                                   TCGA
                      ____________________________________________________________
consensus                                                                     TCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF014D05+                                               ACAAGTACCCCCTCTCAATCGGAC
JMSF020H13+           GAGGACCGGAAAAGATCCCCCGATCGAGGGGTCCCGACAAGTACCCCCTCTCAATCGGAC
                      ____________________________________________________________
consensus             GAGGACCGGAAAAGATCCCCCGATCGAGGGGTCCCGACAAGTACCCCCTCTCAATCGGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF014D05+           CGGACATGAAGCCGCGCTNTACCGAACCGGAGCTCTGTAAAAAGCCGGAGCCCAGCAGCG
JMSF020H13+           CGGACATGAAGCCGCGCTCTACCGAACCGGAGCTCTGTAAAAAGCCGGAGCCCAGCAGCG
                      ____________________________________________________________
consensus             CGGACATGAAGCCGCGCTCTACCGAACCGGAGCTCTGTAAAAAGCCGGAGCCCAGCAGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF014D05+           GGCCGGAGTGGATTGAGTTTCTGGGGATTGGCTGCAGAGGGATGGAAGCAAAGGAGGTGG
JMSF020H13+           GGCCGGAGTGGATTGAGTTTCTGGGGATTGGCTGCAGAGGGATGGAAGCAAAGGAGGTGG
                      ____________________________________________________________
consensus             GGCCGGAGTGGATTGAGTTTCTGGGGATTGGCTGCAGAGGGATGGAAGCAAAGGAGGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF014D05+           AGCTCTCGAAGGTAGAAGAGCGATCGATGCTATTGTACGAATAGACGTCGACGAAGGCGG
JMSF020H13+           AGCTCTCGAAGGTAGAAGAGCGATCGATGCTATTGTACGAATAGACGTCGACGAAGGCGG
                      ____________________________________________________________
consensus             AGCTCTCGAAGGTAGAAGAGCGATCGATGCTATTGTACGAATAGACGTCGACGAAGGCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF014D05+           TGGAGAGCGGCGTCGAGGTGTTGGCACTAACAGAGGCGCCGGAAATTGACCGGAACGTCG
JMSF020H13+           TGGAGAGCGGCGTCGAGGTGTTGGCACTAACAGAGGCGCCGGAAATTGACCGGAACGTCG
                      ____________________________________________________________
consensus             TGGAGAGCGGCGTCGAGGTGTTGGCACTAACAGAGGCGCCGGAAATTGACCGGAACGTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF014D05+           TCGTTTCCTCTGAGTGAACCTTAGACGACGACGACAGCCGCGCCACCTCGGGAACGTAGC
JMFF013O16+                                                CCGCGCCACCTCGGGAANGTAGC
JMSF020H13+           TCGTTTCCTCTGAGTGAACCTTAGACGACGACGACAGCCGCGCCACCTCGGGAACGTAGC
                      ____________________________________________________________
consensus             TCGTTTCCTCTGAGTGAACCTTAGACGACGACGACAGCCGCGCCACCTCGGGAACGTAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF014D05+           AGAATGAATGTCCCAAGTCATCCAACGGCTCCGATATCACCACCTGGAATTCCTTCCGCC
JMFF013O16+           AGAATGAATGTCCCAAGTCATCCACCGGCTCCGATATCACCACCTGGAATTCNTTCCGCC
JMSF020H13+           AGAATGAATGTCCCAAGTCATCCAACGGCTCCGATATCACCACCTGGAATTCCTTCCGCC
                      ____________________________________________________________
consensus             AGAATGAATGTCCCAAGTCATCCAACGGCTCCGATATCACCACCTGGAATTCCTTCCGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF014D05+           GCCGCGCTTCCATGCCGGCGGCGTCGCCGCCCGTGAAGCAAACGCTCAGTTTACCAACAC
JMFF013O16+           GCCGCGCTTCCATGCCGGCGGCGTCNCCGCCCGTGAAGCAAACGCTCAGTTTACCAACAC
JMSF020H13+           GCCGCGCTTCCATGCCGGCGGCGTCGCCGCCCGTGAAGCAAACGCTCAGTTTACCAACAC
                      ____________________________________________________________
consensus             GCCGCGCTTCCATGCCGGCGGCGTCGCCGCCCGTGAAGCAAACGCTCAGTTTACCAACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF014D05+           CGTTCCCCATATTATAAAGAAATGAAGTAACTTTCGATTATGTCTGTCAAAA        
JMFF013O16+           CGTTCCCCATATTATAAAGAAATGAAGTAACTTTCGATTATGTCTGTCAAAACCCNCCAA
JMSF020H13+           CGTTCCCCATATTATAAAGAAATGAAGTAACTTTCGATTATGTCTGTCAAAACCCACCAA
                      ____________________________________________________________
consensus             CGTTCCCCATATTATAAAGAAATGAAGTAACTTTCGATTATGTCTGTCAAAACCCACCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013O16+           AGCTCACACGCCCATCTCTCTAAAAAAAATGGCGATTTACTGATTTCCGAATTCCGAGTG
JMSF020H13+           AGCTCACACGCCCATCTCTCTAAAAAAAATGGCGATTTACTGATTTCCGAATTCCGAGTG
                      ____________________________________________________________
consensus             AGCTCACACGCCCATCTCTCTAAAAAAAATGGCGATTTACTGATTTCCGAATTCCGAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013O16+           TGAAGCCAAGAAGAAGAAGAAGGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCGT  
JMSF020H13+           TGAAGCCAAGAAGAAGAAGAAGGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCGTCC
                      ____________________________________________________________
consensus             TGAAGCCAAGAAGAAGAAGAAGGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCGTCC