Contig 002198:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN009M22Sequence577002198 (7)ref|XP_004240678.1|2e-66PREDICTED: probable gamma-secretase subunit PEN-2 [Solanum lycopersicum]
JMFN015J03Sequence546002198 (7)ref|XP_004240678.1|1e-65PREDICTED: probable gamma-secretase subunit PEN-2 [Solanum lycopersicum]
JMFN033A24Sequence566002198 (7)ref|XP_004240678.1|9e-65PREDICTED: probable gamma-secretase subunit PEN-2 [Solanum lycopersicum]
JMFN034D05Sequence609002198 (7)ref|XP_004240678.1|2e-65PREDICTED: probable gamma-secretase subunit PEN-2 [Solanum lycopersicum]
JMFN034F03Sequence590002198 (7)ref|XP_004240678.1|1e-65PREDICTED: probable gamma-secretase subunit PEN-2 [Solanum lycopersicum]
JMSF019M04Sequence529002198 (7)ref|XP_004240678.1|5e-66PREDICTED: probable gamma-secretase subunit PEN-2 [Solanum lycopersicum]595002198 (7)ref|XP_004240678.1|1e-65PREDICTED: probable gamma-secretase subunit PEN-2 [Solanum lycopersicum]

Alignment

This contig is upended


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JMFN033A24+                                       GAATTCATCTGAAGCTTAAACAAAAACTGAGG
JMFN009M22+                                  AATGAGAATTCATCTGAAGCTTAAACAAAAACTGAGG
JMFN034F03+                                                                   GAGG
JMFN015J03+                                                 GAAGCTTAAACAAAAACTGAGG
JMFN034D05+                                                 GAAGCTTAAACAAAAACTGAGG
                      ____________________________________________________________
consensus                                    AATGAGAATTCATCTGAAGCTTAAACAAAAACTGAGG
 
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JMFN033A24+           CAAGTGGGTAGGGATCATGATTCATGAATACAGCCGATGAACACAATTTTCCCATGTTGA
JMFN009M22+           CAAGTGGGTAGGGATCATGATTCATGAATACAGCCGATGAACACAATTTTCCCATGTTGA
JMFN034F03+           CAAGTGGGTAGGGATCATGATTCATGAATACAGCCGATGAACACAATTTTCCCATGTTGA
JMFN015J03+           CAAGTGGGTAGGGATCATGATTCATGAATACAGCCGATGAACACAATTTTCCCATGTTGA
JMFN034D05+           CAAGTGGGTAGGGATCATGATTCATGAATACAGCCGATGAACACAATTTTCCCATGTTGA
rJMSF019M04-               GGGTAGGGATCATGATTCATGAATACAGCCGATGAACACAATTTTCCCATGTTGA
                      ____________________________________________________________
consensus             CAAGTGGGTAGGGATCATGATTCATGAATACAGCCGATGAACACAATTTTCCCATGTTGA
 
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JMFN033A24+           AAAAAGCAAAATTAAGCAGATGCCAAAACAACTAAACAGTTATAGTCTCGATCTGGGAAA
JMFN009M22+           AAAAAGCAAAATTAAGCAGATGCCAAAACAACTAAACAGTTATAGTCTCGATCTGGGAAA
JMFN034F03+           AAAAAGCAAAATTAAGCAGATGCCAAAACAACTAAACAGTTATAGTCTCGATCTGGGAAA
JMFN015J03+           AAAAAGCAAAATTAAGCAGATGCCAAAACAACTAAACAGTTATAGTCTCGATCTGGGAAA
JMFN034D05+           AAAAAGCAAAATTAAGCAGATGCCAAAACAACTAAACAGTTATAGTCTCGATCTGGGAAA
rJMSF019M04-          AAAAAGCAAAATTAAGCAGATGCCAAAACAACTAAACAGTTATAGTCTCGATCTGGGAAA
JMSF019M04+                      TTAAGCAGATGCCAAAACAACTAAACAGTTATAGTCTCGATCTGGGAAA
                      ____________________________________________________________
consensus             AAAAAGCAAAATTAAGCAGATGCCAAAACAACTAAACAGTTATAGTCTCGATCTGGGAAA
 
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JMFN033A24+           GTAAGCGAGACTCCAATCACGTAGTTTAGACGCAAGTGCAGTATTTACATCCAGCCCGTC
JMFN009M22+           GTAAGCGAGACTCCAATCACGTAGTTTAGACGCAAGTGCAGTATTTACATCCAGCCCGTC
JMFN034F03+           GTAAGCGAGACTCCAATCACGTAGTTTAGACGCAAGTGCAGTATTTACATCCAGCCCGTC
JMFN015J03+           GTAAGCGAGACTCCAATCACGTAGTTTAGACGCAAGTGCAGTATTTACATCCAGCCCGTC
JMFN034D05+           GTAAGCGAGACTCCAATCACGTAGTTTAGACGCAAGTGCAGTATTTACATCCAGCCCGTC
rJMSF019M04-          GTAAGCGAGACTCCAATCACGTAGTTTAGACGCAAGTGCAGTATTTACATCCAGCCCGTC
JMSF019M04+           GTAAGCGAGACTCCAATCACGTAGTTTAGACGCAAGTGCAGTATTTACATCCAGCCCGTC
                      ____________________________________________________________
consensus             GTAAGCGAGACTCCAATCACGTAGTTTAGACGCAAGTGCAGTATTTACATCCAGCCCGTC
 
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JMFN033A24+           AATCCATATTTTTCAGCGACATTGTACATTACCAGCTCATTCCAAACATTCCCGAATAGA
JMFN009M22+           AATCCATATTTTTCAGCGACATTGTACATTACCAGCTCATTCCAAACATTCCCGAATAGA
JMFN034F03+           AATCCATATTTTTCAGCGACATTGTACATTACCAGCTCATTCCAAACATTCCCGAATAGA
JMFN015J03+           AATCCATATTTTTCAGCGACATTGTACATTACCAGCTCATTCCAAACATTCCCGAATAGA
JMFN034D05+           AATCCATATTTTTCAGCGACATTGTACATTACCAGCTCATTCCAAACATTCCCGAATAGA
rJMSF019M04-          AATCCATATTTTTCAGCGACATTGTACATTACCAGCTCATTCCAAACATTCCCGAATAGA
JMSF019M04+           AATCCATATTTTTCAGCGACATTGTACATTACCAGCTCATTCCAAACATTCCCGAATAGA
                      ____________________________________________________________
consensus             AATCCATATTTTTCAGCGACATTGTACATTACCAGCTCATTCCAAACATTCCCGAATAGA
 
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JMFN033A24+           TGCTCTCCTCCGACAGCAAAGGTAATAGCCCATGAACCAAGAATAGCGGTGAACACTGTG
JMFN009M22+           TGCTCTCCTCCGACAGCAAAGGTAATAGCCCATGAACCAAGAATAGCGGTGAACACTGTG
JMFN034F03+           TGCTCTCCTCCGACAGCAAAGGTAATAGCCCATGAACCAAGAATAGCGGTGAACACTGTG
JMFN015J03+           TGCTCTCCTCCGACAGCAAAGGTAATAGCCCATGAACCAAGAATAGCGGTGAACACTGTG
JMFN034D05+           TGCTCTCCTCCGACAGCAAAGGTAATAGCCCATGAACCAAGAATAGCGGTGAACACTGTG
rJMSF019M04-          TGCTCTCCTCCGACAGCAAAGGTAATAGCCCATGAACCAAGAATAGCGGTGAACACTGTG
JMSF019M04+           TGCTCTCCTCCGACAGCAAAGGTAATAGCCCATGAACCAAGAATAGCGGTGAACACTGTG
                      ____________________________________________________________
consensus             TGCTCTCCTCCGACAGCAAAGGTAATAGCCCATGAACCAAGAATAGCGGTGAACACTGTG
 
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JMFN033A24+           AATCCGATAGCTGATCCAACTACATAGCGACGGAGATCTCGATTGAAGTGAGAAGTGGGG
JMFN009M22+           AATCCGATAGCTGATCCAACTACATAGCGACGGAGATCTGGATTGAAGTGAGAAGTGGGG
JMFN034F03+           AATCCGATAGCTGATCCAACTACATAGCGACGGAGATCTGGATTGAAGTGAGAAGTGGGG
JMFN015J03+           AATCCGATAGCTGATCCAACTACATAGCGACGGAGATCTGGATTGAAGTGAGAAGTGGGG
JMFN034D05+           AATCCGATAGCTGATCCAACTACATAGCGACGGAGATCTGGATTGAAGTGAGAAGTGGGG
rJMSF019M04-          AATCCGATAGCTGATCCAACTACATAGCGACGGAGATCTGGATTGAAGTGAGAAGTGGGG
JMSF019M04+           AATCCGATAGCTGATCCAACTACATAGCGACGGAGATCTGGATTGAAGTGAGAAGTGGGG
                      ____________________________________________________________
consensus             AATCCGATAGCTGATCCAACTACATAGCGACGGAGATCTGGATTGAAGTGAGAAGTGGGG
 
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JMFN033A24+           CGGCGAAGGACAGGCCAGAAGTAGAAGCAATTGACGGCCCAAAGCCATGGGAGTAGCAAA
JMFN009M22+           CGGCGAAGGACAGGCCAGAAGTAGAAGCAATTGACGGCCCAAAGCCATGGGAGTAGCAAA
JMFN034F03+           CGGCGAAGGACAGGCCAGAAGTAGAAGCAATTGACGGCCCAAAGCCATGGGAGTAGCAAA
JMFN015J03+           CGGCGAAGGACAGGCCAGAAGTAGAAGCAATTGACGGCCCAAAGCCATGGGAGTAGCAAA
JMFN034D05+           CGGCGAAGGACAGGCCAGAAGTAGAAGCAATTGACGGCCCAAAGCCATGGGAGTAGCAAA
rJMSF019M04-          CGGCGAAGGACAGGCCAGAAGTAGAAGCAATTGACGGCCCAAAGCCATGGGAGTAGCAAA
JMSF019M04+           CGGCGAAGGACAGGCCAGAAGTAGAAGCAATTGACGGCCCAAAGCCATGGGAGTAGCAAA
                      ____________________________________________________________
consensus             CGGCGAAGGACAGGCCAGAAGTAGAAGCAATTGACGGCCCAAAGCCATGGGAGTAGCAAA
 
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JMFN033A24+           AATCCGAACTTGAAGAACCTACGGGCGTATCCAATTGAGTCCTGCTCCGACAGCCCCAGC
JMFN009M22+           AATCCGAACTTGAAGAACCTACGGGCGTATCCAATTGAGTCCTGCTCCGACAGCCCCAGC
JMFN034F03+           AATCCGAACTTGAAGAACCTACGGGCGTATCCAATTGAGTCCTGCTCCGACAGCCCCAGC
JMFN015J03+           AATCCGAACTTGAAGAACCTACGGGCGTATCCAATTGAGTCCTGCTCCGACAGCCCCAGC
JMFN034D05+           AATCCGAACTTGAAGAACCTACGGGCGTATCCAATTGAGTCCTGCTCCGACAGCCCCAGC
rJMSF019M04-          AATCCGAACTTGAAGAACCTACGGGCGTATCCAATTGAGTCCTGCTCCGACAGCCCCAGC
JMSF019M04+           AATCCGAACTTGAAGAACCTACGGGCGTATCCAATTGAGTCCTGCTCCGACAGCCCCAGC
                      ____________________________________________________________
consensus             AATCCGAACTTGAAGAACCTACGGGCGTATCCAATTGAGTCCTGCTCCGACAGCCCCAGC
 
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JMFN033A24+           GGGCCGTCAACGGTAGGCCAGTCGACTCTCAGCGGAGACCCGCGGTGGCTGCCG      
JMFN009M22+           GGGCCGTCAACGGTAGGCCAGTCGACTCTCAGCGGAGACCCGCGGTGGCTGCCGGAGGAG
JMFN034F03+           GGGCCGTCAACGGTAGGCCAGTCGACTCTCAGCGGAGACCCGCGGTGGCTGCCGGAGGAG
JMFN015J03+           GGGCCGTCAACGGTAGGCCAGTCGACTCTCAGCGGAGACCCGCG                
JMFN034D05+           GGGCCGTCAACGGTAGGCCAGTCGACTCTCAGCGGAGACCCGCGGTGGCTGCCGGAGGAG
rJMSF019M04-          GGGCCGTCAACGGTAGGCCAGTCGACTCTCAGCGGAGACCCGCGGTGGCTGCCGGAGGAG
JMSF019M04+           GGGCCGTCAACGGTAGGCCAGTCGACTCTCAGCGGAGACCCGCGGTGGCTGCCGGAGGAG
                      ____________________________________________________________
consensus             GGGCCGTCAACGGTAGGCCAGTCGACTCTCAGCGGAGACCCGCGGTGGCTGCCGGAGGAG
 
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JMFN034F03+           TCGCCAGCGGTGGTGGCGCTAGAAACAGTATGATCCTGGGTTTCCA              
JMFN034D05+           TCGCCAGCGGTGGTGGCGCTAGAAACAGTATGATCCTGGGTTTCCA              
rJMSF019M04-          TCGCCAGCGGTGGTGGCGCTAGAAACAGTATGATCCTGGGTTTCCATCCTCTGTGGGCTC
JMSF019M04+           TCGCCAGCGGTGGTGGCGCTAGAAACAGTATGATCCTGGGTTTCCATCCTCTGTGGGCTC
                      ____________________________________________________________
consensus             TCGCCAGCGGTGGTGGCGCTAGAAACAGTATGATCCTGGGTTTCCATCCTCTGTGGGCTC