Contig 002195:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018P09Sequence360002195 (5)629008575 (5)ref|XP_004250912.1|1e-70PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Solanum lycopersicum]
JMSF020P06Sequence696002195 (5)ref|XP_009798644.1|3e-16PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Nicotiana sylvestris]722008575 (5)ref|XP_011090146.1|7e-87PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Sesamum indicum]
JMSF020P07Sequence684002195 (5)ref|XP_009798644.1|3e-16PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Nicotiana sylvestris]632008575 (5)ref|XP_004250912.1|4e-71PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Solanum lycopersicum]
JMSF032K19Sequence678002195 (5)ref|XP_009798644.1|3e-16PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Nicotiana sylvestris]629008575 (5)ref|XP_004250912.1|9e-72PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Solanum lycopersicum]
JMSF035P07Sequence628002195 (5)ref|XP_009798644.1|2e-16PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Nicotiana sylvestris]615008575 (5)ref|XP_004250912.1|8e-73PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF032K19+                  ATTGATGTGCTTTGTTGCAAGGTTTCACTTCATGGGCAGTACTGTGGTAACCC
JMSF020P06+                                 TGCAAGGTTTCACTTCATGGGCAGTACTGTGGTAACCC
JMSF020P07+                                            ACTTCATGGGCAGTACTGTGGTAACCC
                      ____________________________________________________________
consensus                    ATTGATGTGCTTTGTTGCAAGGTTTCACTTCATGGGCAGTACTGTGGTAACCC
 
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JMSF032K19+           AGATCTGAACCACCTATGCTTCCATTTTCTTGTGAGAAGATTACTGGTATTGTTGCTTTT
JMSF020P06+           AGATCTGAACCACCTATGCTTCCATTTTCTTGTGAGAAGATTACTGGTATTGTTGCTTTT
JMSF035P07+                                        TTGTGAGAAGATTACTGGTATTGTTGCTTTT
JMSF020P07+           AGATCTGAACCACCTATGCTTCCATTTTCTTGTGAGAAGATTACTGGTATTGTTGCTTTT
                      ____________________________________________________________
consensus             AGATCTGAACCACCTATGCTTCCATTTTCTTGTGAGAAGATTACTGGTATTGTTGCTTTT
 
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JMSF032K19+           TCAGTACTGCCAGAAGTATTTTTGGAGTTCTCCTTACTAAAAACCTTGGATGGTTGAGCT
JMSF020P06+           TCAGTACTGCCAGAAGTATTTTTGGAGTTCTCCTTACTAAAAACCTTGGATGGTTGAGCT
JMSF035P07+           TCAGTACTGCCAGAAGTATTTTTGGAGTTCTCCTTACTAAAAACCTTGGATGGTTGAGCT
JMSF020P07+           TCAGTACTGCCAGAAGTATTTTTGGAGTTCTCCTTACTAAAAACCTTGGATGGTTGAGCT
                      ____________________________________________________________
consensus             TCAGTACTGCCAGAAGTATTTTTGGAGTTCTCCTTACTAAAAACCTTGGATGGTTGAGCT
 
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JMSF032K19+           CCCCTAGAATAATCAACTTTTGTTGGATTTGAGTTCAAAATTCCCACAGATCTTAGGGTT
JMSF020P06+           CCCCTAGAATAATCAACTTTTGTTGGATTTGAGTTCAAAATTCCCACAGATCTTAGGGTT
JMSF035P07+           CCCCTAGAATAATCAACTTTTGTTGGATTTGAGTTCAAAATTCCCACAGATCTTAGGGTT
JMSF020P07+           CCCCTAGAATAATCAACTTTTGTTGGATTTGAGTTCAAAATTCCCACAGATCTTAGGGTT
                      ____________________________________________________________
consensus             CCCCTAGAATAATCAACTTTTGTTGGATTTGAGTTCAAAATTCCCACAGATCTTAGGGTT
 
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JMSF032K19+           GCAGAATCCAAAGAACCAAATGTAATCTCTACATCATTCTTCATTGGGTGCCCTTGCAAA
JMSF020P06+           GCAGAATCCAAAGAACCAAATGTAATCTCTACATCATTCTTCATTGGGTGCCCTTGCAAA
JMSF035P07+           GCAGAATCCAAAGAACCAAATGTAATCTCTACATCATTCTTCATTGGGTGCCCTTGCAAA
JMSF020P07+           GCAGAATCCAAAGAACCAAATGTAATCTCTACATCATTCTTCATTGGGTGCCCTTGCAAA
                      ____________________________________________________________
consensus             GCAGAATCCAAAGAACCAAATGTAATCTCTACATCATTCTTCATTGGGTGCCCTTGCAAA
 
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JMSF032K19+           GATCTAATCTCATCTTCTGTGAATGACCCAAAGATGAAAACCTTGGGATCAGTCATATTC
JMSF020P06+           GATCTAATCTCATCTTCTGTGAATGACCCAAAGATGAAAACCTTGGGATCAGTCATATTC
JMSF035P07+           GATCTAATCTCATCTTCTGTGAATGACCCAAAGATGAAAACCTTGGGATCAGTCATATTC
JMSF020P07+           GATCTAATCTCATCTTCTGTGAATGACCCAAAGATGAAAACCTTGGGATCAGTCATATTC
                      ____________________________________________________________
consensus             GATCTAATCTCATCTTCTGTGAATGACCCAAAGATGAAAACCTTGGGATCAGTCATATTC
 
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JMSF032K19+           GAAGACTGGAGCAGGACAGGCTCAGAGGAGAGCCAGTGAGGAGGCCATCGGAGAAGAAGC
JMSF020P06+           GAAGACTGGAGCAGGACAGGCTCAGAGGAGAGCCAGTGAGGAGGCCATCGGAGAAGAAGC
JMSF035P07+           GAAGACTGGAGCAGGACAGGCTCAGAGGAGAGCCAGTGAGGAGGCCATCGGAGAAGAAGC
JMSF020P07+           GAAGACTGGAGCAGGACAGGCTCAGAGGAGAGCCAGTGAGGAGGCCATCGGAGAAGAAGC
JMSF018P09+           GAAGACTGGAGCAGGACAGGCTCAGAGGAGAGCCAGTGAGGAGGCCATCGGAGAAGAAGC
                      ____________________________________________________________
consensus             GAAGACTGGAGCAGGACAGGCTCAGAGGAGAGCCAGTGAGGAGGCCATCGGAGAAGAAGC
 
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JMSF032K19+           GGCGCCGTAGAGGGGTGTGAATCGGGAGCCAAATGCAGGAGACCAGGAAGACAACAGAAG
JMSF020P06+           GGCGCCGTAGAGGGGTGTGAATCGGGAGCCAAATGCAGGAGACCAGGAAGACAACAGAAG
JMSF035P07+           GGCGCCGTAGAGGGGTGTGAATCGGGAGCCAAATGCAGGAGACCAGGAAGACAACAGAAG
JMSF020P07+           GGCGCCGTAGAGGGGTGTGAATCGGGAGCCAAATGCAGGAGACCAGGAAGACAACAGAAG
JMSF018P09+           GGCGCCGTAGAGGGGTGTGAATCGGGAGCCAAATGCAGGAGACCAGGAAGACAACAGAAG
                      ____________________________________________________________
consensus             GGCGCCGTAGAGGGGTGTGAATCGGGAGCCAAATGCAGGAGACCAGGAAGACAACAGAAG
 
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JMSF032K19+           ACATGAAAATGCGGGGGGAGAAGAAGAAGAGAGGAGAGGGGAAGAGAAGAGAAGAGTGTT
JMSF020P06+           ACATGAAAATGCGGGGGGAGAAGAAGAAGAGAGGAGAGGGGAAGAGAAGAGAAGAGTGTT
JMSF035P07+           ACATGAAAATGCGGGGGGAGAAGAAGAAGAGAGGAGAGGGGAAGAGAAGAGAAGAGTGTT
JMSF020P07+           ACATGAAAATGCGGGGGGAGAAGAAGAAGAGAGGAGAGGGGAAGAGAAGAGAAGAGTGTT
JMSF018P09+           ACATGAAAATGCGGGGGGAGAAGAAGAAGAGAGGAGAGGGGAAGAGAAGAGAAGAGTGTT
                      ____________________________________________________________
consensus             ACATGAAAATGCGGGGGGAGAAGAAGAAGAGAGGAGAGGGGAAGAGAAGAGAAGAGTGTT
 
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JMSF032K19+           TGTTAGGGTTTGGTCTCTCTCCCTCTTGTGAGGATTTCGGGTTTGGAGGTGAAGAAAGTG
JMSF020P06+           TGTTAGGGTTTGGTCTCTCTCCCTCTTGTGAGGATTTCGGGTTTGGAGGTGAAGAAAGTG
JMSF035P07+           TGTTAGGGTTTGGTCTCTCTCCCTCTTGTGAGGATTTCGGGTTTGGAGGTGAAGAAAGTG
JMSF020P07+           TGTTAGGGTTTGGTCTCTCTCCCTCTTGTGAGGATTTCGGGTTTGGAGGTGAAGAAAGTG
JMSF018P09+           TGTTAGGGTTTGGTCTCTCTCCCTCTTGTGAGGATTTCGGGTTTGGAGGTGAAGAAAGTG
                      ____________________________________________________________
consensus             TGTTAGGGTTTGGTCTCTCTCCCTCTTGTGAGGATTTCGGGTTTGGAGGTGAAGAAAGTG
 
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JMSF032K19+           TTGTAATGGCGGACAAAAAGGGTTTTTGGGCAAACAGTGAGGAGAAATGGAGAGCCCAAA
JMSF020P06+           TTGTAATGGCGGACAAAAAGGGTTTTTGGGCAAACAGTGAGGAGAAATGGAGAGCCCAAA
JMSF035P07+           TTGTAATGGCGGACAAAAAGGGTTTTTGGGCAAACAGTGAGGAGAAATGGAGAGCCCAAA
JMSF020P07+           TTGTAATGGCGGACAAAAAGGGTTTTTGGGCAAACAGTGAGGAGAAATGGAGAGCCCAAA
JMSF018P09+           TTGTAATGGCGGACAAAAAGGGTTTTTGGGCAAACAGTGAGGAGAAATGGAGAGCCCAAA
                      ____________________________________________________________
consensus             TTGTAATGGCGGACAAAAAGGGTTTTTGGGCAAACAGTGAGGAGAAATGGAGAGCCCAAA
 
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JMSF032K19+           CGGAGACAATGGGGGAAGAGGCAC                                    
JMSF020P06+           CGGAGACAATGGGGGAAGAGGCACTGTAAATAATTGGAGACGACACTATTTTTGGC    
JMSF035P07+           CGGAGACAATGGGGGAAGAGGCACTGTAAATAATTGGAGACGACACTATTTTTGGC    
JMSF020P07+           CGGAGACAATGGGGGAAGAGGCACTGTAAATAATTGGAGACGACACTATTTTTGGC    
JMSF018P09+           CGGAGACAATGGGGGAAGAGGCACTGTAAATAATTGGAGACGACACTATTTTTGGCAACC
                      ____________________________________________________________
consensus             CGGAGACAATGGGGGAAGAGGCACTGTAAATAATTGGAGACGACACTATTTTTGGCAACC