Contig 002191:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018C04Sequence559002191 (3)ref|XP_008346009.1|3e-36PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-li766008500 (3)gb|ACF17670.1|7e-111putative pyruvate dehydrogenase E1 beta subunit [Capsicum annuum]
JMSF018H23Sequence247002191 (3)662008500 (3)ref|XP_006346842.1|2e-131PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-li
JMSF027L22Sequence651002191 (3)ref|XP_008346009.1|5e-58PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-li691008500 (3)gb|ACF17670.1|7e-143putative pyruvate dehydrogenase E1 beta subunit [Capsicum annuum]

Alignment

This contig is upended


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JMSF027L22+                    GGAGTGTCGAGGACCCTTAAATCACCGTACTTTTCTGCCAGTCCTTTAGTG
                      ____________________________________________________________
consensus                      GGAGTGTCGAGGACCCTTAAATCACCGTACTTTTCTGCCAGTCCTTTAGTG
 
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JMFF018C04+                                                   TCACACACACACTCGGATCT
JMSF027L22+           ACCTTGTATGAACCTCCATAATGACCGACATCTTCACCCATCACACACACACTCGGATCT
                      ____________________________________________________________
consensus             ACCTTGTATGAACCTCCATAATGACCGACATCTTCACCCATCACACACACACTCGGATCT
 
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JMFF018C04+           CTTTCCATCTCCTCATCAAGCCCTTCCCGAAGGGCTTCAAAAAGCAAAAGTTCATGCCCC
JMSF027L22+           CTTTCCATCTCCCCATCAAGCCCTTCCCGAAGGGCTTCAAAAAGCAAAAGTTCATGCCCC
                      ____________________________________________________________
consensus             CTTTCCATCTCCTCATCAAGCCCTTCCCGAAGGGCTTCAAAAAGCAAAAGTTCATGCCCC
 
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JMFF018C04+           GGTTTGGACGATGTAGAAGCAGCTGCACCATCAGCCTTCGTCGCAACAGCACTAGTAACC
JMSF027L22+           GGTTTGGACGATGTAGAAGCAGCTGCACCATCAGCCTTCGTCGCAACAGCACTAGTAACC
                      ____________________________________________________________
consensus             GGTTTGGACGATGTAGAAGCAGCTGCACCATCAGCCTTCGTCGCAACAGCACTAGTAACC
 
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JMFF018C04+           AATTGCTCAGCTCTCTTTCCATTCCAGCTCAAACCAGAGCTTAATCTCCCATCAGATCTA
JMSF027L22+           AATTGCTCAGCTCTCTTTCCATTCCAGCTCAAACCAGAGCTTAATCTCCCATCAGATCTA
                      ____________________________________________________________
consensus             AATTGCTCAGCTCTCTTTCCATTCCAGCTCAAACCAGAGCTTAATCTCCCATCAGATCTA
 
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JMFF018C04+           ATCACAAAAAAGGTTCCTTTCCTCCCTGGGAAAGATCTGCGAGAAGAGATGTGAAACTTC
JMSF027L22+           ATCACAAAAAAGGTTCCTTTCCTCCCTGGGAAAGATCTGCGAGAAGAGATGTGAAACTTC
                      ____________________________________________________________
consensus             ATCACAAAAAAGGTTCCTTTCCTCCCTGGGAAAGATCTGCGAGAAGAGATGTGAAACTTC
 
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JMFF018C04+           TTGGAATCTAAGGAATTGGGCGAGGAGAGAGTAGTAGCGGCCCCAATTGCTTGAATAATA
JMSF027L22+           TTGGAATCTAAGGAATTGGGCGAGGAGAGAGTAGTAGCGGCCCCAATTGCTTGAATAATA
JMSF018H23+                                                                AATAATA
                      ____________________________________________________________
consensus             TTGGAATCTAAGGAATTGGGCGAGGAGAGAGTAGTAGCGGCCCCAATTGCTTGAATAATA
 
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JMFF018C04+           GCAGCCATTTCTTCTTCTTCTTCTTCTTATGCTTCCTGAATTGGTGATGAAGAATTCCAA
JMSF027L22+           GCAGCCATTTCTTCTTCTTCTTCTTCTTATGCTTCCTGAATTGGTGATGAAGAATTCCAA
JMSF018H23+           GCAGCCATTTCTTCTTCTTCTTCTTCTTATGCTTCCTGAATTGGTGATGAAGAATTCCAA
                      ____________________________________________________________
consensus             GCAGCCATTTCTTCTTCTTCTTCTTCTTATGCTTCCTGAATTGGTGATGAAGAATTCCAA
 
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JMFF018C04+           GTACAGCAATACTACCTACATTCAAGAAATAGCGCAGACTTTGTGTGGGGAAGAAAGTAT
JMSF027L22+           GTACAGCAATACTACCTACATTCAAGAAATAGCGCAGACTTTGTGTGGGGAAGAAAGTAT
JMSF018H23+           GTACAGCAATACTACCTACATTCAAGAAATAGCGCAGACTTTGTGTGGGGAAGAAAGTAT
                      ____________________________________________________________
consensus             GTACAGCAATACTACCTACATTCAAGAAATAGCGCAGACTTTGTGTGGGGAAGAAAGTAT
 
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JMFF018C04+           ATAGAGATTGATAGAAAGTGGCGTGGTTTCATAGATAGAAAGAGTGGGAAGGGCGGCGGA
JMSF027L22+           ATAGAGATTGATAGAAAGTGGCGTGGTTTCATAGATAGAAAGAGTGGGAAGGGCGGCGGA
JMSF018H23+           ATAGAGATTGATAGAAAGTGGCGTGGTTTCATAGATAGAAAGAGTGGGAAGGGCGGCGGA
                      ____________________________________________________________
consensus             ATAGAGATTGATAGAAAGTGGCGTGGTTTCATAGATAGAAAGAGTGGGAAGGGCGGCGGA
 
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JMFF018C04+           CAAAGCGAGGTGTAGGAGAGGTCGGGGCAGAAACTTTCATTTTTGTTCTGAGTTTCGG  
JMSF027L22+           CAAAGCGAGGTGTAGGAGAGGTCGGGGCAGAAACTTTCATTTTTGTTCTGAGTTTCGG  
JMSF018H23+           CAAAGCGAGGTGTAGGAGAGGTCGGGGCAGAAACTTTCATTTTTGTTNTGAGTTTCGGCC
                      ____________________________________________________________
consensus             CAAAGCGAGGTGTAGGAGAGGTCGGGGCAGAAACTTTCATTTTTGTTCTGAGTTTCGGCC